More than 300 homologs were found in PanDaTox collection
for query gene Jden_1864 on replicon NC_013174
Organism: Jonesia denitrificans DSM 20603



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  100 
 
 
391 aa  800    Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_013521  Sked_08570  cell envelope-related function transcriptional attenuator common domain protein  46.15 
 
 
365 aa  286  5.999999999999999e-76  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.671315  normal  0.595892 
 
 
-
 
NC_013521  Sked_08580  cell envelope-related function transcriptional attenuator common domain protein  44.23 
 
 
396 aa  266  2.9999999999999995e-70  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.783991  normal  0.393457 
 
 
-
 
NC_013530  Xcel_2594  cell envelope-related transcriptional attenuator  41.55 
 
 
442 aa  263  3e-69  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  42.06 
 
 
389 aa  249  5e-65  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_012669  Bcav_3844  cell envelope-related protein transcriptional attenuator  42.55 
 
 
373 aa  229  8e-59  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  38.89 
 
 
417 aa  226  4e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  40.06 
 
 
395 aa  222  8e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  36.73 
 
 
400 aa  210  4e-53  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3214  cell envelope-related transcriptional attenuator  36.87 
 
 
443 aa  206  7e-52  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000235319 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  41.05 
 
 
506 aa  201  9.999999999999999e-51  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_013530  Xcel_1025  cell envelope-related transcriptional attenuator  37.82 
 
 
434 aa  201  1.9999999999999998e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.11457  n/a   
 
 
-
 
NC_013721  HMPREF0424_0589  putative transcriptional regulator  38.93 
 
 
498 aa  199  6e-50  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.581304 
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  37.81 
 
 
395 aa  194  2e-48  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  35.71 
 
 
406 aa  189  9e-47  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  35.52 
 
 
478 aa  183  5.0000000000000004e-45  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1026  cell envelope-related transcriptional attenuator  41.53 
 
 
402 aa  182  9.000000000000001e-45  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.999724  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  40.07 
 
 
481 aa  180  4e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  35.23 
 
 
530 aa  177  3e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  34.88 
 
 
481 aa  175  9.999999999999999e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  37.06 
 
 
468 aa  175  9.999999999999999e-43  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_00540  cell envelope-related function transcriptional attenuator common domain protein  41.79 
 
 
357 aa  174  1.9999999999999998e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.916603  normal  0.105126 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  35.85 
 
 
618 aa  170  3e-41  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  35.59 
 
 
379 aa  160  3e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  33.12 
 
 
468 aa  160  5e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  34.78 
 
 
549 aa  159  8e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  35.86 
 
 
619 aa  158  2e-37  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  30.65 
 
 
584 aa  158  2e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  31.86 
 
 
480 aa  157  3e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  33.33 
 
 
504 aa  157  4e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  36.05 
 
 
509 aa  156  5.0000000000000005e-37  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  33.14 
 
 
453 aa  155  1e-36  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_013131  Caci_7541  cell envelope-related transcriptional attenuator  29.61 
 
 
540 aa  149  6e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.371514 
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  32.71 
 
 
643 aa  149  8e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  32.15 
 
 
505 aa  149  1.0000000000000001e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  33.13 
 
 
520 aa  146  6e-34  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  35.74 
 
 
497 aa  141  1.9999999999999998e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4976  cell envelope-related transcriptional attenuator  34.12 
 
 
551 aa  140  3.9999999999999997e-32  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  33.23 
 
 
491 aa  139  1e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  33.21 
 
 
465 aa  132  1.0000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  29.11 
 
 
521 aa  132  2.0000000000000002e-29  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  33.45 
 
 
390 aa  129  9.000000000000001e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  35.21 
 
 
486 aa  129  9.000000000000001e-29  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  33.04 
 
 
512 aa  127  4.0000000000000003e-28  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  30.04 
 
 
521 aa  126  6e-28  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  33.33 
 
 
349 aa  125  1e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1965  cell envelope-related transcriptional attenuator  27.92 
 
 
487 aa  120  3.9999999999999996e-26  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000312518 
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  29.83 
 
 
362 aa  119  9.999999999999999e-26  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  26.51 
 
 
734 aa  117  3.9999999999999997e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6814  cell envelope-related transcriptional attenuator  32.05 
 
 
1336 aa  115  1.0000000000000001e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4513  cell envelope-related transcriptional attenuator  28.8 
 
 
699 aa  112  1.0000000000000001e-23  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4600  cell envelope-related transcriptional attenuator  28.8 
 
 
699 aa  112  1.0000000000000001e-23  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  30.57 
 
 
326 aa  112  1.0000000000000001e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_009338  Mflv_1666  cell envelope-related transcriptional attenuator  27.72 
 
 
649 aa  112  1.0000000000000001e-23  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  31.44 
 
 
365 aa  112  1.0000000000000001e-23  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_009077  Mjls_4896  cell envelope-related transcriptional attenuator  28.8 
 
 
701 aa  112  2.0000000000000002e-23  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5087  cell envelope-related transcriptional attenuator  27.69 
 
 
687 aa  111  3e-23  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  30.77 
 
 
516 aa  110  6e-23  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  30.34 
 
 
382 aa  109  8.000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  27.97 
 
 
512 aa  108  1e-22  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  29 
 
 
356 aa  108  2e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  25.57 
 
 
684 aa  108  2e-22  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  30.65 
 
 
414 aa  107  3e-22  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  30.19 
 
 
393 aa  107  3e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  31.6 
 
 
520 aa  107  4e-22  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  35.43 
 
 
307 aa  107  4e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  31.25 
 
 
560 aa  107  4e-22  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  31.09 
 
 
336 aa  106  5e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_011886  Achl_0126  cell envelope-related transcriptional attenuator  28.73 
 
 
499 aa  105  1e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  29.1 
 
 
625 aa  105  1e-21  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3186  cell envelope-related transcriptional attenuator  30.37 
 
 
451 aa  104  3e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.689692 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  30.12 
 
 
420 aa  103  5e-21  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  26.86 
 
 
410 aa  102  8e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  27.91 
 
 
353 aa  102  8e-21  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  28.98 
 
 
732 aa  102  1e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  30.45 
 
 
407 aa  101  2e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  31.58 
 
 
307 aa  101  3e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  30.74 
 
 
434 aa  100  4e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  29.34 
 
 
409 aa  100  5e-20  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  31.23 
 
 
404 aa  99.8  8e-20  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  29.59 
 
 
545 aa  99  1e-19  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  32.03 
 
 
394 aa  98.6  2e-19  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_013205  Aaci_1875  cell envelope-related transcriptional attenuator  31.78 
 
 
344 aa  98.2  2e-19  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  30.88 
 
 
320 aa  98.2  2e-19  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_2008  transcription antiterminator, LytR family  28.38 
 
 
333 aa  97.8  3e-19  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  6.0610299999999994e-43 
 
 
-
 
NC_003909  BCE_2056  LytR family transcription antiterminator  28 
 
 
333 aa  97.4  3e-19  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00905786  n/a   
 
 
-
 
NC_005945  BAS1830  LytR family transcription antiterminator  28.38 
 
 
333 aa  97.8  3e-19  Bacillus anthracis str. Sterne  Bacteria  normal  0.241912  n/a   
 
 
-
 
NC_005957  BT9727_1804  LytR family transcriptional regulator  28.38 
 
 
333 aa  97.8  3e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00220424  n/a   
 
 
-
 
NC_006274  BCZK1787  LytR family transcriptional regulator  28.38 
 
 
335 aa  97.8  3e-19  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1973  LytR family transcription antiterminator  28.38 
 
 
333 aa  97.8  3e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0803  cell envelope-related transcriptional attenuator  27.02 
 
 
317 aa  97.1  5e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_08810  cell envelope-related function transcriptional attenuator common domain protein  28.62 
 
 
374 aa  96.7  6e-19  Micrococcus luteus NCTC 2665  Bacteria  normal  0.155806  n/a   
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  26.87 
 
 
563 aa  96.3  7e-19  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  29.53 
 
 
381 aa  96.7  7e-19  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1838  cell envelope-related transcriptional attenuator  27.67 
 
 
333 aa  96.3  8e-19  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00343174  n/a   
 
 
-
 
NC_011772  BCG9842_B3352  transcription antiterminator, LytR family  27.57 
 
 
335 aa  96.3  9e-19  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000199263  hitchhiker  0.0000000000000086496 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  28.9 
 
 
573 aa  95.5  1e-18  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0015  cell envelope-related transcriptional attenuator  27.82 
 
 
503 aa  95.5  1e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0348648  hitchhiker  0.0000779954 
 
 
-
 
NC_009674  Bcer98_1499  cell envelope-related transcriptional attenuator  28.52 
 
 
329 aa  95.9  1e-18  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.000000186761  n/a   
 
 
-
 
NC_011658  BCAH187_A2078  transcription antiterminator, LytR family  27.67 
 
 
333 aa  95.9  1e-18  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000000542577  n/a   
 
 
-
 
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