More than 300 homologs were found in PanDaTox collection
for query gene Strop_3629 on replicon NC_009380
Organism: Salinispora tropica CNB-440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009953  Sare_4011  cell envelope-related transcriptional attenuator  88.01 
 
 
380 aa  664    Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000201414 
 
 
-
 
NC_009380  Strop_3629  transcription attenuator LytR  100 
 
 
378 aa  763    Salinispora tropica CNB-440  Bacteria  normal  0.142384  normal 
 
 
-
 
NC_013947  Snas_0942  cell envelope-related transcriptional attenuator  34.78 
 
 
349 aa  192  7e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.165177  normal  0.737127 
 
 
-
 
NC_013947  Snas_6317  cell envelope-related transcriptional attenuator  32.81 
 
 
390 aa  187  4e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4511  transcription attenuator LytR  37.54 
 
 
358 aa  185  9e-46  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5021  cell envelope-related transcriptional attenuator  35.2 
 
 
312 aa  185  1.0000000000000001e-45  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00237783 
 
 
-
 
NC_013947  Snas_6384  cell envelope-related transcriptional attenuator  32.6 
 
 
352 aa  162  6e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6385  cell envelope-related transcriptional attenuator  31.01 
 
 
358 aa  158  1e-37  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1681  cell envelope-related transcriptional attenuator  30.43 
 
 
357 aa  152  8.999999999999999e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0240426  normal  0.562376 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  33.71 
 
 
420 aa  146  5e-34  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  30.23 
 
 
382 aa  144  3e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  33.33 
 
 
414 aa  140  3e-32  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  28.89 
 
 
390 aa  122  8e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  28.89 
 
 
349 aa  116  7.999999999999999e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  34.06 
 
 
486 aa  111  2.0000000000000002e-23  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  28.29 
 
 
362 aa  108  2e-22  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  33.88 
 
 
307 aa  107  4e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013530  Xcel_2594  cell envelope-related transcriptional attenuator  31.35 
 
 
442 aa  107  4e-22  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  28.22 
 
 
643 aa  105  1e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  28.47 
 
 
478 aa  103  3e-21  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  27.71 
 
 
517 aa  104  3e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  31.1 
 
 
365 aa  103  3e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  30.29 
 
 
445 aa  103  4e-21  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  32.32 
 
 
336 aa  103  4e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  30.94 
 
 
468 aa  103  4e-21  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1198  cell envelope-related transcriptional attenuator  33.5 
 
 
585 aa  103  6e-21  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  30.7 
 
 
491 aa  102  9e-21  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  28.95 
 
 
625 aa  102  1e-20  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  31.62 
 
 
419 aa  102  1e-20  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_013385  Adeg_1973  cell envelope-related transcriptional attenuator  29.39 
 
 
418 aa  102  2e-20  Ammonifex degensii KC4  Bacteria  normal  0.554316  n/a   
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  30.45 
 
 
573 aa  101  2e-20  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  32.39 
 
 
326 aa  101  2e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  29.66 
 
 
567 aa  100  3e-20  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  30.24 
 
 
522 aa  100  4e-20  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  36.09 
 
 
393 aa  100  6e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3844  cell envelope-related protein transcriptional attenuator  30.55 
 
 
373 aa  99.8  6e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  33.33 
 
 
306 aa  99.8  7e-20  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  32.14 
 
 
545 aa  99.8  8e-20  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  31.48 
 
 
411 aa  99  1e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  29.9 
 
 
520 aa  99  1e-19  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  32.86 
 
 
311 aa  99  1e-19  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  31.8 
 
 
356 aa  99  1e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  32.86 
 
 
311 aa  99  1e-19  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  29.65 
 
 
493 aa  98.6  1e-19  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  31.99 
 
 
512 aa  97.8  2e-19  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  27.19 
 
 
480 aa  98.2  2e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_013525  Tter_0570  cell envelope-related transcriptional attenuator  31.88 
 
 
377 aa  98.2  2e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  27.18 
 
 
732 aa  97.4  3e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  32.5 
 
 
311 aa  97.4  3e-19  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  31.34 
 
 
353 aa  97.1  5e-19  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  29.29 
 
 
468 aa  96.3  7e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  29.43 
 
 
453 aa  96.3  8e-19  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  27.62 
 
 
335 aa  95.9  9e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  28.92 
 
 
497 aa  95.9  1e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_06080  cell envelope-related function transcriptional attenuator common domain protein  27.02 
 
 
538 aa  95.5  1e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.832186  normal  0.188153 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  30.47 
 
 
516 aa  95.5  1e-18  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  31.7 
 
 
584 aa  95.1  2e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  25.97 
 
 
530 aa  94.4  3e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  28.67 
 
 
549 aa  94.7  3e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13296  CPSA-related protein  29.24 
 
 
497 aa  93.6  5e-18  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000000747689  normal 
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  28.39 
 
 
490 aa  93.2  7e-18  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  35.62 
 
 
320 aa  93.2  7e-18  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3228  cell envelope-related transcriptional attenuator  25.74 
 
 
377 aa  93.2  7e-18  Arthrobacter sp. FB24  Bacteria  normal  0.0471557  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  28.39 
 
 
490 aa  93.2  7e-18  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  28.39 
 
 
490 aa  93.2  7e-18  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  28.8 
 
 
405 aa  92.8  8e-18  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  29.02 
 
 
521 aa  92.8  9e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  28.46 
 
 
319 aa  92.4  1e-17  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_013521  Sked_08580  cell envelope-related function transcriptional attenuator common domain protein  31.97 
 
 
396 aa  91.3  3e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.783991  normal  0.393457 
 
 
-
 
NC_008346  Swol_1921  cell envelope-related transcriptional attenuator  27.85 
 
 
406 aa  90.5  4e-17  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.116318  n/a   
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  26.37 
 
 
618 aa  90.9  4e-17  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  30.46 
 
 
375 aa  90.1  6e-17  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  30.46 
 
 
375 aa  90.1  6e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  30.46 
 
 
375 aa  90.1  6e-17  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  30.46 
 
 
375 aa  90.1  6e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  30 
 
 
481 aa  89.7  7e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  28.96 
 
 
307 aa  89.7  7e-17  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  25.15 
 
 
381 aa  89.7  7e-17  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  26.96 
 
 
313 aa  89.7  7e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  30.46 
 
 
377 aa  89.7  8e-17  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  30.46 
 
 
375 aa  89.7  8e-17  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  27.68 
 
 
619 aa  89  1e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  28.23 
 
 
310 aa  88.6  2e-16  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_009767  Rcas_0287  cell envelope-related transcriptional attenuator  32.69 
 
 
412 aa  88.2  2e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2233  cell envelope-related transcriptional attenuator  30.34 
 
 
303 aa  88.6  2e-16  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3186  cell envelope-related transcriptional attenuator  32.81 
 
 
451 aa  87.4  3e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.689692 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  26.27 
 
 
379 aa  87.8  3e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  29.6 
 
 
374 aa  87.4  3e-16  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  31.23 
 
 
466 aa  87.8  3e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  28.39 
 
 
493 aa  87.4  3e-16  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_011772  BCG9842_B5566  membrane-bound transcriptional regulator LytR  28.93 
 
 
304 aa  87  4e-16  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  29.6 
 
 
372 aa  87.4  4e-16  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  26.6 
 
 
496 aa  87.4  4e-16  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_004116  SAG0368  hypothetical protein  26.65 
 
 
435 aa  87  5e-16  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  30.46 
 
 
377 aa  87  5e-16  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4947  membrane-bound transcriptional regulator LytR  28.93 
 
 
304 aa  86.7  6e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0889022  n/a   
 
 
-
 
NC_008148  Rxyl_0152  cell envelope-related transcriptional attenuator  33.18 
 
 
271 aa  86.3  7e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  33.48 
 
 
407 aa  86.3  8e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  29.19 
 
 
684 aa  85.9  9e-16  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  25.08 
 
 
408 aa  86.3  9e-16  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
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