More than 300 homologs were found in PanDaTox collection
for query gene Rpic_2976 on replicon NC_010682
Organism: Ralstonia pickettii 12J



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010682  Rpic_2976  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
368 aa  756    Ralstonia pickettii 12J  Bacteria  normal  0.598418  normal 
 
 
-
 
NC_012856  Rpic12D_2566  response regulator receiver sensor signal transduction histidine kinase  95.38 
 
 
369 aa  719    Ralstonia pickettii 12D  Bacteria  normal  normal  0.236818 
 
 
-
 
NC_003295  RSc2737  two component response regulator transcription regulator protein  83.02 
 
 
374 aa  613  9.999999999999999e-175  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2950  response regulator receiver sensor signal transduction histidine kinase  56.57 
 
 
378 aa  396  1e-109  Cupriavidus metallidurans CH34  Bacteria  normal  0.37884  normal 
 
 
-
 
NC_007347  Reut_A2813  response regulator receiver sensor signal transduction histidine kinase  57.18 
 
 
377 aa  392  1e-108  Ralstonia eutropha JMP134  Bacteria  normal  0.963287  n/a   
 
 
-
 
NC_007952  Bxe_B2007  response regulator receiver sensor signal transduction histidine kinase  52.42 
 
 
388 aa  352  8e-96  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000116465  normal  0.0324755 
 
 
-
 
NC_010676  Bphyt_4751  response regulator receiver sensor signal transduction histidine kinase  52.88 
 
 
384 aa  327  2.0000000000000001e-88  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0259995  normal  0.0850645 
 
 
-
 
NC_008781  Pnap_3728  response regulator receiver sensor signal transduction histidine kinase  44.27 
 
 
395 aa  281  1e-74  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.439666  normal  0.0786529 
 
 
-
 
NC_007952  Bxe_B2691  response regulator receiver domain-containing protein  52.59 
 
 
134 aa  120  4.9999999999999996e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1289  response regulator receiver protein  51.33 
 
 
134 aa  110  5e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  0.295021  normal  0.0758601 
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  22.85 
 
 
359 aa  107  3e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_007347  Reut_A2812  response regulator receiver  41.73 
 
 
335 aa  104  2e-21  Ralstonia eutropha JMP134  Bacteria  normal  0.101507  n/a   
 
 
-
 
NC_007973  Rmet_2949  response regulator receiver domain-containing protein  38 
 
 
332 aa  102  1e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2689  response regulator receiver domain-containing protein  40.29 
 
 
339 aa  100  3e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.579235  normal 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  24.34 
 
 
365 aa  99.8  7e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1291  response regulator receiver protein  39.57 
 
 
336 aa  99  1e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.127237  normal  0.0846123 
 
 
-
 
NC_003295  RSc2738  response regulator transcription regulator protein  37.11 
 
 
336 aa  96.7  6e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2567  response regulator receiver protein  36.48 
 
 
339 aa  95.5  1e-18  Ralstonia pickettii 12D  Bacteria  normal  normal  0.342173 
 
 
-
 
NC_013173  Dbac_2272  response regulator receiver sensor signal transduction histidine kinase  26.81 
 
 
382 aa  94.7  2e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.275022  n/a   
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  26.46 
 
 
371 aa  94.4  3e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2977  response regulator receiver protein  36.48 
 
 
339 aa  94.4  3e-18  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2440  response regulator receiver sensor signal transduction histidine kinase  27.58 
 
 
375 aa  94.4  3e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.467167  normal  0.627522 
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  27.02 
 
 
379 aa  94  4e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6110  PAS/PAC sensor signal transduction histidine kinase  32.55 
 
 
513 aa  90.9  3e-17  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0621826 
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  26.49 
 
 
374 aa  90.5  4e-17  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_007509  Bcep18194_C7077  periplasmic sensor signal transduction histidine kinase  30 
 
 
480 aa  90.1  6e-17  Burkholderia sp. 383  Bacteria  normal  normal  0.871735 
 
 
-
 
NC_008639  Cpha266_1801  integral membrane sensor hybrid histidine kinase  28.16 
 
 
699 aa  89.7  8e-17  Chlorobium phaeobacteroides DSM 266  Bacteria  unclonable  0.00000631548  n/a   
 
 
-
 
NC_008346  Swol_2547  response regulator receiver protein  32.95 
 
 
395 aa  89.4  9e-17  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  36.23 
 
 
410 aa  89.4  1e-16  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4654  PAS/PAC sensor signal transduction histidine kinase  30.31 
 
 
707 aa  89  1e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  24.74 
 
 
379 aa  89.4  1e-16  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_008781  Pnap_3729  response regulator receiver protein  37.5 
 
 
323 aa  89  1e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.800159  normal  0.0418103 
 
 
-
 
NC_004578  PSPTO_5398  sensor histidine kinase  29.69 
 
 
602 aa  87.8  3e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  25.53 
 
 
379 aa  87  4e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010831  Cphamn1_0927  integral membrane sensor hybrid histidine kinase  28.7 
 
 
704 aa  87  5e-16  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0769186  normal 
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  33.11 
 
 
154 aa  86.7  6e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4539  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  27.06 
 
 
1152 aa  85.5  0.000000000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.329946  n/a   
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  27.51 
 
 
383 aa  85.5  0.000000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  22.91 
 
 
391 aa  85.1  0.000000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2006  periplasmic sensor hybrid histidine kinase  30.9 
 
 
852 aa  85.1  0.000000000000002  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000507491  normal  0.0782006 
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  37.82 
 
 
484 aa  84.7  0.000000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3892  PAS/PAC sensor signal transduction histidine kinase  31.08 
 
 
512 aa  84  0.000000000000004  Methylobacterium populi BJ001  Bacteria  normal  normal  0.234407 
 
 
-
 
NC_008825  Mpe_A0208  PAS/PAC sensor signal transduction histidine kinase  30.29 
 
 
708 aa  82.8  0.000000000000008  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.832424 
 
 
-
 
NC_008043  TM1040_3371  histidine kinase  30.77 
 
 
887 aa  82.8  0.000000000000008  Ruegeria sp. TM1040  Bacteria  normal  normal  0.564838 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  26.46 
 
 
383 aa  82  0.00000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  37.78 
 
 
823 aa  82.4  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3506  ATP-binding region, ATPase-like  28.91 
 
 
496 aa  81.6  0.00000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.0457672  n/a   
 
 
-
 
NC_014148  Plim_3061  ATP-binding region ATPase domain protein  24.43 
 
 
863 aa  81.6  0.00000000000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.141845  n/a   
 
 
-
 
NC_008700  Sama_2212  putative two-component sensor histidine kinase protein  26.75 
 
 
600 aa  81.6  0.00000000000002  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  29.65 
 
 
475 aa  82  0.00000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  26.6 
 
 
395 aa  81.6  0.00000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.00858549 
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  33.56 
 
 
151 aa  81.6  0.00000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_011992  Dtpsy_3366  PAS/PAC sensor signal transduction histidine kinase  30.58 
 
 
716 aa  81.6  0.00000000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  37.4 
 
 
1111 aa  81.3  0.00000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_009523  RoseRS_0231  GAF sensor hybrid histidine kinase  29.67 
 
 
844 aa  80.9  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.794534  normal  0.63544 
 
 
-
 
NC_012918  GM21_2551  response regulator receiver sensor signal transduction histidine kinase  23.34 
 
 
396 aa  80.9  0.00000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  1.14529e-19 
 
 
-
 
NC_013037  Dfer_2392  response regulator receiver sensor signal transduction histidine kinase  23.36 
 
 
363 aa  80.9  0.00000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1952  histidine kinase  27.57 
 
 
560 aa  80.9  0.00000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3433  response regulator receiver sensor hybrid histidine kinase  27.52 
 
 
503 aa  81.3  0.00000000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.812028  normal  0.0364545 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  37.93 
 
 
1180 aa  80.5  0.00000000000004  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_011146  Gbem_1662  response regulator receiver sensor signal transduction histidine kinase  23.53 
 
 
396 aa  80.1  0.00000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3153  response regulator receiver sensor signal transduction histidine kinase  24.47 
 
 
366 aa  80.5  0.00000000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4627  multi-sensor signal transduction histidine kinase  31.98 
 
 
461 aa  80.1  0.00000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2923  putative transmembrane sensor histidine kinase transcription regulator protein  25 
 
 
410 aa  79.3  0.00000000000009  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.950573 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  26.58 
 
 
372 aa  79.3  0.00000000000009  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2789  integral membrane sensor signal transduction histidine kinase  29.78 
 
 
677 aa  79  0.0000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  36.99 
 
 
515 aa  79  0.0000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  27.3 
 
 
355 aa  79.3  0.0000000000001  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  30.06 
 
 
270 aa  78.6  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008390  Bamb_2927  periplasmic sensor signal transduction histidine kinase  29.78 
 
 
672 aa  79.3  0.0000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.600674  n/a   
 
 
-
 
NC_008782  Ajs_4016  PAS/PAC sensor signal transduction histidine kinase  30.24 
 
 
716 aa  78.6  0.0000000000002  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4937  sensor histidine kinase  28.91 
 
 
604 aa  78.2  0.0000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  38.79 
 
 
1156 aa  78.2  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_007778  RPB_1364  PAS/PAC sensor signal transduction histidine kinase  29.13 
 
 
510 aa  78.6  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0632  PAS/PAC sensor hybrid histidine kinase  26.09 
 
 
695 aa  78.6  0.0000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.554525  normal 
 
 
-
 
NC_007953  Bxe_C0018  seriplasmic sensor signal transduction histidine kinase  28.96 
 
 
409 aa  78.2  0.0000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.702355 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  30.71 
 
 
309 aa  78.6  0.0000000000002  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  37.19 
 
 
303 aa  78.6  0.0000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0775  sensor histidine kinase  25.76 
 
 
674 aa  77.4  0.0000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  32.52 
 
 
557 aa  77.8  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_013440  Hoch_2262  response regulator receiver sensor signal transduction histidine kinase  27.71 
 
 
406 aa  77.8  0.0000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.146487 
 
 
-
 
NC_010814  Glov_1745  response regulator receiver sensor signal transduction histidine kinase  22.03 
 
 
417 aa  77  0.0000000000004  Geobacter lovleyi SZ  Bacteria  normal  0.0330192  n/a   
 
 
-
 
NC_011894  Mnod_2116  PAS/PAC sensor signal transduction histidine kinase  28.57 
 
 
524 aa  77.4  0.0000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3274  PAS/PAC sensor signal transduction histidine kinase  27.27 
 
 
526 aa  77  0.0000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_1751  integral membrane sensor signal transduction histidine kinase  23.1 
 
 
671 aa  77  0.0000000000005  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  35.04 
 
 
495 aa  77  0.0000000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  38.14 
 
 
473 aa  77  0.0000000000005  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_009767  Rcas_0886  GAF sensor hybrid histidine kinase  29.55 
 
 
842 aa  77  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00435524 
 
 
-
 
NC_010508  Bcenmc03_2883  histidine kinase  29.41 
 
 
669 aa  77  0.0000000000005  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.296171  normal 
 
 
-
 
NC_007643  Rru_A1436  histidine kinase  27.92 
 
 
617 aa  76.6  0.0000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2115  integral membrane sensor signal transduction histidine kinase  27.04 
 
 
604 aa  76.6  0.0000000000006  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00123104  n/a   
 
 
-
 
NC_008609  Ppro_2968  response regulator receiver sensor signal transduction histidine kinase  23.68 
 
 
392 aa  76.6  0.0000000000006  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2258  periplasmic sensor signal transduction histidine kinase  29.41 
 
 
669 aa  76.6  0.0000000000006  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  29.25 
 
 
154 aa  76.6  0.0000000000006  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_008542  Bcen2424_2872  periplasmic sensor signal transduction histidine kinase  29.41 
 
 
669 aa  76.6  0.0000000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  0.13678  n/a   
 
 
-
 
NC_010625  Bphy_5606  integral membrane sensor signal transduction histidine kinase  35.29 
 
 
485 aa  76.6  0.0000000000007  Burkholderia phymatum STM815  Bacteria  normal  0.195097  normal 
 
 
-
 
NC_011146  Gbem_2923  histidine kinase  27.78 
 
 
598 aa  76.6  0.0000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0344  PAS/PAC sensor signal transduction histidine kinase  23.18 
 
 
459 aa  76.6  0.0000000000007  Xanthobacter autotrophicus Py2  Bacteria  normal  0.337335  normal  0.899671 
 
 
-
 
NC_013440  Hoch_5521  response regulator receiver sensor signal transduction histidine kinase  28.63 
 
 
524 aa  76.3  0.0000000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.90101 
 
 
-
 
NC_008781  Pnap_3513  integral membrane sensor signal transduction histidine kinase  27.53 
 
 
425 aa  76.3  0.0000000000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.600596  normal 
 
 
-
 
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