More than 300 homologs were found in PanDaTox collection
for query gene RSc2737 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc2737  two component response regulator transcription regulator protein  100 
 
 
374 aa  761    Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2976  response regulator receiver sensor signal transduction histidine kinase  83.02 
 
 
368 aa  627  1e-179  Ralstonia pickettii 12J  Bacteria  normal  0.598418  normal 
 
 
-
 
NC_012856  Rpic12D_2566  response regulator receiver sensor signal transduction histidine kinase  82.35 
 
 
369 aa  617  1e-175  Ralstonia pickettii 12D  Bacteria  normal  normal  0.236818 
 
 
-
 
NC_007973  Rmet_2950  response regulator receiver sensor signal transduction histidine kinase  55.74 
 
 
378 aa  385  1e-106  Cupriavidus metallidurans CH34  Bacteria  normal  0.37884  normal 
 
 
-
 
NC_007347  Reut_A2813  response regulator receiver sensor signal transduction histidine kinase  56.13 
 
 
377 aa  384  1e-105  Ralstonia eutropha JMP134  Bacteria  normal  0.963287  n/a   
 
 
-
 
NC_007952  Bxe_B2007  response regulator receiver sensor signal transduction histidine kinase  53.12 
 
 
388 aa  348  8e-95  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000116465  normal  0.0324755 
 
 
-
 
NC_010676  Bphyt_4751  response regulator receiver sensor signal transduction histidine kinase  52.45 
 
 
384 aa  325  7e-88  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0259995  normal  0.0850645 
 
 
-
 
NC_008781  Pnap_3728  response regulator receiver sensor signal transduction histidine kinase  43.8 
 
 
395 aa  284  2.0000000000000002e-75  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.439666  normal  0.0786529 
 
 
-
 
NC_007952  Bxe_B2691  response regulator receiver domain-containing protein  47.2 
 
 
134 aa  114  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1289  response regulator receiver protein  47.54 
 
 
134 aa  108  1e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  0.295021  normal  0.0758601 
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  22.22 
 
 
359 aa  107  4e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_007973  Rmet_2949  response regulator receiver domain-containing protein  40 
 
 
332 aa  103  4e-21  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2812  response regulator receiver  39.86 
 
 
335 aa  103  5e-21  Ralstonia eutropha JMP134  Bacteria  normal  0.101507  n/a   
 
 
-
 
NC_007952  Bxe_B2689  response regulator receiver domain-containing protein  41.55 
 
 
339 aa  100  4e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.579235  normal 
 
 
-
 
NC_010681  Bphyt_1291  response regulator receiver protein  40.85 
 
 
336 aa  99.8  7e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  0.127237  normal  0.0846123 
 
 
-
 
NC_003295  RSc2738  response regulator transcription regulator protein  37.2 
 
 
336 aa  98.6  1e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  23.32 
 
 
365 aa  99  1e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2977  response regulator receiver protein  36.75 
 
 
339 aa  97.8  2e-19  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2567  response regulator receiver protein  36.36 
 
 
339 aa  97.4  4e-19  Ralstonia pickettii 12D  Bacteria  normal  normal  0.342173 
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  38.46 
 
 
410 aa  95.5  1e-18  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3729  response regulator receiver protein  39.26 
 
 
323 aa  95.5  1e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.800159  normal  0.0418103 
 
 
-
 
NC_010831  Cphamn1_0927  integral membrane sensor hybrid histidine kinase  28.21 
 
 
704 aa  89.4  9e-17  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0769186  normal 
 
 
-
 
NC_008825  Mpe_A0208  PAS/PAC sensor signal transduction histidine kinase  31.3 
 
 
708 aa  89  1e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.832424 
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  36.3 
 
 
484 aa  89.4  1e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4539  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  26.79 
 
 
1152 aa  88.6  2e-16  Ralstonia eutropha JMP134  Bacteria  normal  0.329946  n/a   
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  35.21 
 
 
154 aa  87  4e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5398  sensor histidine kinase  30.77 
 
 
602 aa  87  5e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2968  response regulator receiver sensor signal transduction histidine kinase  23.06 
 
 
392 aa  85.9  9e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2440  response regulator receiver sensor signal transduction histidine kinase  27.5 
 
 
375 aa  85.9  0.000000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.467167  normal  0.627522 
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  31.06 
 
 
475 aa  85.5  0.000000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  37.3 
 
 
1180 aa  85.5  0.000000000000001  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  26.44 
 
 
379 aa  85.1  0.000000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1801  integral membrane sensor hybrid histidine kinase  28.69 
 
 
699 aa  85.1  0.000000000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  unclonable  0.00000631548  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  37.24 
 
 
515 aa  84.7  0.000000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  25.94 
 
 
395 aa  85.1  0.000000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.00858549 
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  36.92 
 
 
823 aa  84  0.000000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7077  periplasmic sensor signal transduction histidine kinase  31.37 
 
 
480 aa  83.6  0.000000000000005  Burkholderia sp. 383  Bacteria  normal  normal  0.871735 
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  25.26 
 
 
379 aa  82.4  0.00000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_007348  Reut_B3506  ATP-binding region, ATPase-like  30.95 
 
 
496 aa  82.4  0.00000000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.0457672  n/a   
 
 
-
 
NC_008700  Sama_2212  putative two-component sensor histidine kinase protein  27.31 
 
 
600 aa  82  0.00000000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3153  response regulator receiver sensor signal transduction histidine kinase  26.32 
 
 
366 aa  81.6  0.00000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2547  response regulator receiver protein  32.4 
 
 
395 aa  82  0.00000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4654  PAS/PAC sensor signal transduction histidine kinase  29.37 
 
 
707 aa  81.3  0.00000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6110  PAS/PAC sensor signal transduction histidine kinase  32.22 
 
 
513 aa  81.3  0.00000000000003  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0621826 
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  21.65 
 
 
391 aa  81.3  0.00000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  25.53 
 
 
374 aa  80.9  0.00000000000003  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_013173  Dbac_2272  response regulator receiver sensor signal transduction histidine kinase  26.79 
 
 
382 aa  81.3  0.00000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.275022  n/a   
 
 
-
 
NC_011894  Mnod_2116  PAS/PAC sensor signal transduction histidine kinase  31.98 
 
 
524 aa  81.3  0.00000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  32.87 
 
 
151 aa  80.9  0.00000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  30.83 
 
 
309 aa  80.5  0.00000000000004  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_009720  Xaut_0344  PAS/PAC sensor signal transduction histidine kinase  26.06 
 
 
459 aa  80.1  0.00000000000006  Xanthobacter autotrophicus Py2  Bacteria  normal  0.337335  normal  0.899671 
 
 
-
 
NC_007005  Psyr_4937  sensor histidine kinase  30.38 
 
 
604 aa  79.7  0.00000000000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  35.29 
 
 
495 aa  79.3  0.00000000000009  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  33.77 
 
 
1156 aa  79.3  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  25.59 
 
 
379 aa  79  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  30.82 
 
 
270 aa  79.3  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009523  RoseRS_0231  GAF sensor hybrid histidine kinase  31.47 
 
 
844 aa  78.6  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.794534  normal  0.63544 
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  25.93 
 
 
371 aa  78.2  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2789  integral membrane sensor signal transduction histidine kinase  28.52 
 
 
677 aa  78.2  0.0000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  37.82 
 
 
1111 aa  78.2  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_008390  Bamb_2927  periplasmic sensor signal transduction histidine kinase  28.52 
 
 
672 aa  78.2  0.0000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.600674  n/a   
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  38.66 
 
 
473 aa  78.2  0.0000000000002  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_010730  SYO3AOP1_1751  integral membrane sensor signal transduction histidine kinase  23.57 
 
 
671 aa  78.6  0.0000000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  34.19 
 
 
965 aa  78.6  0.0000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal 
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  37.27 
 
 
496 aa  77.4  0.0000000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_010725  Mpop_3892  PAS/PAC sensor signal transduction histidine kinase  30.24 
 
 
512 aa  77.8  0.0000000000003  Methylobacterium populi BJ001  Bacteria  normal  normal  0.234407 
 
 
-
 
NC_008781  Pnap_3513  integral membrane sensor signal transduction histidine kinase  27.86 
 
 
425 aa  77.8  0.0000000000003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.600596  normal 
 
 
-
 
NC_013037  Dfer_2392  response regulator receiver sensor signal transduction histidine kinase  21.76 
 
 
363 aa  77.8  0.0000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  29.66 
 
 
154 aa  77.8  0.0000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_011060  Ppha_1021  putative PAS/PAC sensor protein  34.07 
 
 
564 aa  77.4  0.0000000000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2006  periplasmic sensor hybrid histidine kinase  30.21 
 
 
852 aa  77.4  0.0000000000004  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000507491  normal  0.0782006 
 
 
-
 
NC_008043  TM1040_3371  histidine kinase  28.17 
 
 
887 aa  77.4  0.0000000000004  Ruegeria sp. TM1040  Bacteria  normal  normal  0.564838 
 
 
-
 
NC_012856  Rpic12D_0193  histidine kinase  30.19 
 
 
670 aa  77.4  0.0000000000004  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0541233 
 
 
-
 
NC_012918  GM21_0668  histidine kinase  29.55 
 
 
542 aa  77  0.0000000000005  Geobacter sp. M21  Bacteria  n/a    hitchhiker  6.512830000000001e-32 
 
 
-
 
NC_007760  Adeh_1327  response regulator receiver sensor signal transduction histidine kinase  25.52 
 
 
375 aa  76.6  0.0000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2942  response regulator  34.92 
 
 
456 aa  76.3  0.0000000000007  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_013440  Hoch_5521  response regulator receiver sensor signal transduction histidine kinase  29.84 
 
 
524 aa  76.6  0.0000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.90101 
 
 
-
 
NC_009767  Rcas_0886  GAF sensor hybrid histidine kinase  30.28 
 
 
842 aa  76.6  0.0000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00435524 
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  25.74 
 
 
406 aa  76.3  0.0000000000008  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_011145  AnaeK_2532  response regulator receiver sensor signal transduction histidine kinase  25.96 
 
 
375 aa  76.3  0.0000000000009  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_5939  response regulator receiver modulated metal dependent phosphohydrolase  37.82 
 
 
472 aa  75.9  0.000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.862183 
 
 
-
 
NC_009832  Spro_1066  histidine kinase  26.79 
 
 
585 aa  75.5  0.000000000001  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00233017 
 
 
-
 
NC_008542  Bcen2424_2872  periplasmic sensor signal transduction histidine kinase  28.2 
 
 
669 aa  75.9  0.000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.13678  n/a   
 
 
-
 
NC_010505  Mrad2831_3274  PAS/PAC sensor signal transduction histidine kinase  29.15 
 
 
526 aa  75.5  0.000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3433  response regulator receiver sensor hybrid histidine kinase  26.75 
 
 
503 aa  75.5  0.000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.812028  normal  0.0364545 
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  35.11 
 
 
456 aa  75.9  0.000000000001  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_009483  Gura_0737  integral membrane sensor signal transduction histidine kinase  28.18 
 
 
644 aa  75.5  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00181069  n/a   
 
 
-
 
NC_009076  BURPS1106A_0477  C4-dicarboxylate transport sensor histidine kinase DctB  28.95 
 
 
677 aa  75.5  0.000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.277779  n/a   
 
 
-
 
NC_009074  BURPS668_0457  C4-dicarboxylate transport sensor histidine kinase DctB  28.95 
 
 
677 aa  75.5  0.000000000001  Burkholderia pseudomallei 668  Bacteria  normal  0.7577  n/a   
 
 
-
 
NC_008060  Bcen_2258  periplasmic sensor signal transduction histidine kinase  28.2 
 
 
669 aa  75.9  0.000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_5575  response regulator receiver modulated metal dependent phosphohydrolase  37.82 
 
 
472 aa  75.9  0.000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2883  histidine kinase  28.2 
 
 
669 aa  75.9  0.000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.296171  normal 
 
 
-
 
NC_007492  Pfl01_0288  histidine kinase  29.62 
 
 
604 aa  74.7  0.000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.709645 
 
 
-
 
NC_011891  A2cp1_2628  response regulator receiver sensor signal transduction histidine kinase  25.52 
 
 
375 aa  75.1  0.000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.7332  n/a   
 
 
-
 
NC_007651  BTH_I0615  response regulator  36.3 
 
 
484 aa  75.1  0.000000000002  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_010512  Bcenmc03_6441  response regulator receiver modulated metal dependent phosphohydrolase  37.82 
 
 
470 aa  75.5  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4653  signal transduction histidine kinase, nitrogen specific, NtrB  28.34 
 
 
709 aa  75.1  0.000000000002  Polaromonas sp. JS666  Bacteria  normal  0.686575  normal 
 
 
-
 
NC_007958  RPD_2347  multi-sensor signal transduction histidine kinase  30.23 
 
 
471 aa  75.1  0.000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.265676  normal 
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  31.47 
 
 
154 aa  74.7  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_011901  Tgr7_0073  PAS/PAC sensor signal transduction histidine kinase  26.82 
 
 
505 aa  74.7  0.000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
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