More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_1289 on replicon NC_010681
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010681  Bphyt_1289  response regulator receiver protein  100 
 
 
134 aa  267  2.9999999999999997e-71  Burkholderia phytofirmans PsJN  Bacteria  normal  0.295021  normal  0.0758601 
 
 
-
 
NC_007952  Bxe_B2691  response regulator receiver domain-containing protein  79.85 
 
 
134 aa  211  2.9999999999999995e-54  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2813  response regulator receiver sensor signal transduction histidine kinase  70.49 
 
 
377 aa  174  3e-43  Ralstonia eutropha JMP134  Bacteria  normal  0.963287  n/a   
 
 
-
 
NC_007973  Rmet_2950  response regulator receiver sensor signal transduction histidine kinase  65 
 
 
378 aa  157  4e-38  Cupriavidus metallidurans CH34  Bacteria  normal  0.37884  normal 
 
 
-
 
NC_007952  Bxe_B2007  response regulator receiver sensor signal transduction histidine kinase  54.76 
 
 
388 aa  141  3e-33  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000116465  normal  0.0324755 
 
 
-
 
NC_010676  Bphyt_4751  response regulator receiver sensor signal transduction histidine kinase  54.87 
 
 
384 aa  135  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0259995  normal  0.0850645 
 
 
-
 
NC_008781  Pnap_3728  response regulator receiver sensor signal transduction histidine kinase  52.17 
 
 
395 aa  116  9.999999999999999e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.439666  normal  0.0786529 
 
 
-
 
NC_012856  Rpic12D_2566  response regulator receiver sensor signal transduction histidine kinase  48.8 
 
 
369 aa  112  1.0000000000000001e-24  Ralstonia pickettii 12D  Bacteria  normal  normal  0.236818 
 
 
-
 
NC_010682  Rpic_2976  response regulator receiver sensor signal transduction histidine kinase  50.86 
 
 
368 aa  111  3e-24  Ralstonia pickettii 12J  Bacteria  normal  0.598418  normal 
 
 
-
 
NC_003295  RSc2737  two component response regulator transcription regulator protein  47.2 
 
 
374 aa  110  9e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2949  response regulator receiver domain-containing protein  43.59 
 
 
332 aa  103  7e-22  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2812  response regulator receiver  42.62 
 
 
335 aa  101  4e-21  Ralstonia eutropha JMP134  Bacteria  normal  0.101507  n/a   
 
 
-
 
NC_007952  Bxe_B2689  response regulator receiver domain-containing protein  42.24 
 
 
339 aa  99.4  2e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.579235  normal 
 
 
-
 
NC_010682  Rpic_2977  response regulator receiver protein  43.59 
 
 
339 aa  98.2  4e-20  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2738  response regulator transcription regulator protein  43.59 
 
 
336 aa  97.1  7e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2567  response regulator receiver protein  42.74 
 
 
339 aa  96.7  9e-20  Ralstonia pickettii 12D  Bacteria  normal  normal  0.342173 
 
 
-
 
NC_010681  Bphyt_1291  response regulator receiver protein  40.52 
 
 
336 aa  95.5  2e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.127237  normal  0.0846123 
 
 
-
 
NC_010814  Glov_2289  response regulator receiver protein  41.03 
 
 
135 aa  84.3  5e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  38.21 
 
 
410 aa  84  7e-16  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1597  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.88 
 
 
860 aa  83.6  8e-16  Burkholderia ambifaria AMMD  Bacteria  normal  0.711633  n/a   
 
 
-
 
NC_008781  Pnap_3729  response regulator receiver protein  39.13 
 
 
323 aa  83.6  9e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.800159  normal  0.0418103 
 
 
-
 
NC_013440  Hoch_5448  response regulator receiver protein  37.5 
 
 
130 aa  83.2  0.000000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.122497 
 
 
-
 
NC_007760  Adeh_3472  response regulator receiver sensor signal transduction histidine kinase  42.62 
 
 
520 aa  82  0.000000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  34.43 
 
 
359 aa  81.3  0.000000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  39.81 
 
 
823 aa  80.1  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1617  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.59 
 
 
860 aa  78.6  0.00000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  34.4 
 
 
1180 aa  78.6  0.00000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_013422  Hneap_1427  response regulator receiver protein  36.36 
 
 
311 aa  77.8  0.00000000000004  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  40.52 
 
 
303 aa  77  0.00000000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3375  response regulator receiver modulated metal dependent phosphohydrolase  40 
 
 
324 aa  76.3  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_0885  response regulator receiver modulated metal dependent phosphohydrolase  40.71 
 
 
324 aa  76.6  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  40 
 
 
456 aa  76.3  0.0000000000001  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_002947  PP_2942  response regulator  40 
 
 
456 aa  75.9  0.0000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_007517  Gmet_3477  PAS/PAC sensor hybrid histidine kinase  37.96 
 
 
1465 aa  75.9  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  32.8 
 
 
1156 aa  75.1  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_011891  A2cp1_3624  multi-sensor signal transduction histidine kinase  40.65 
 
 
523 aa  75.1  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3556  multi-sensor signal transduction histidine kinase  40.65 
 
 
523 aa  75.1  0.0000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2184  two component, sigma54 specific, Fis family transcriptional regulator  38.1 
 
 
497 aa  74.3  0.0000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.682977  normal  0.229753 
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  39.17 
 
 
451 aa  74.3  0.0000000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_008346  Swol_2547  response regulator receiver protein  33.91 
 
 
395 aa  73.9  0.0000000000007  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  34.62 
 
 
309 aa  73.6  0.0000000000008  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_014248  Aazo_2839  GAF(s) sensor(s)-containing protein serine phosphatase  34.82 
 
 
557 aa  73.9  0.0000000000008  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  34.26 
 
 
1172 aa  73.9  0.0000000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_014248  Aazo_4317  response regulator receiver modulated GAF sensor protein  32.76 
 
 
317 aa  72.4  0.000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.248315  n/a   
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  35.85 
 
 
495 aa  72.4  0.000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  35.51 
 
 
270 aa  72.4  0.000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  36.97 
 
 
187 aa  72.4  0.000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2273  putative two-component response regulator  39.66 
 
 
304 aa  72.8  0.000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.438912  n/a   
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  34.62 
 
 
484 aa  72.8  0.000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_3971  putative GAF sensor protein  31.75 
 
 
312 aa  72  0.000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  31.2 
 
 
557 aa  71.6  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  32.23 
 
 
154 aa  72  0.000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  38.21 
 
 
131 aa  71.2  0.000000000004  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_007969  Pcryo_2288  response regulator receiver domain-containing protein  32.26 
 
 
322 aa  71.6  0.000000000004  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.217152 
 
 
-
 
NC_010571  Oter_2708  response regulator receiver protein  37.4 
 
 
141 aa  71.2  0.000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.0523429  normal 
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  42.15 
 
 
1111 aa  70.9  0.000000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  33.61 
 
 
154 aa  70.9  0.000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  33.06 
 
 
154 aa  69.3  0.00000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_008781  Pnap_1956  two component, sigma54 specific, Fis family transcriptional regulator  31.73 
 
 
486 aa  69.3  0.00000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.696783  normal 
 
 
-
 
NC_007298  Daro_0966  type II secretion system protein E  34.48 
 
 
746 aa  69.3  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.783688 
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  37.69 
 
 
438 aa  68.9  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2716  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.33 
 
 
629 aa  68.9  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  36.07 
 
 
515 aa  69.3  0.00000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  40.74 
 
 
473 aa  68.9  0.00000000002  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  34.55 
 
 
151 aa  68.9  0.00000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_012918  GM21_2364  response regulator receiver protein  32.41 
 
 
806 aa  68.6  0.00000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  35.85 
 
 
491 aa  68.6  0.00000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  35.85 
 
 
491 aa  68.6  0.00000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_013037  Dfer_2392  response regulator receiver sensor signal transduction histidine kinase  30.08 
 
 
363 aa  68.6  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2524  response regulator receiver protein  38.05 
 
 
137 aa  67.4  0.00000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1766  response regulator receiver domain-containing protein  26.05 
 
 
311 aa  67.4  0.00000000006  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.143421 
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  34.91 
 
 
492 aa  67  0.00000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_008639  Cpha266_1833  putative PAS/PAC sensor protein  35.04 
 
 
560 aa  67  0.00000000008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
470 aa  66.6  0.0000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  30.77 
 
 
285 aa  65.9  0.0000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1423  response regulator receiver (CheY) and GAF domain-containing protein  31.03 
 
 
315 aa  65.5  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  35.66 
 
 
479 aa  65.9  0.0000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  38.66 
 
 
473 aa  66.2  0.0000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  38.66 
 
 
473 aa  65.9  0.0000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0853  sensor histidine kinase/reponse regulator  37.14 
 
 
845 aa  65.5  0.0000000002  Bartonella bacilliformis KC583  Bacteria  decreased coverage  0.00134282  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  38.66 
 
 
473 aa  66.2  0.0000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_009483  Gura_4027  response regulator receiver modulated metal dependent phosphohydrolase  36.19 
 
 
346 aa  65.5  0.0000000002  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000000247639  n/a   
 
 
-
 
NC_008825  Mpe_A2808  two component, sigma54 specific, Fis family transcriptional regulator  32.69 
 
 
482 aa  65.9  0.0000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1982  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.79 
 
 
1355 aa  65.1  0.0000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  32.76 
 
 
553 aa  65.1  0.0000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2727  response regulator receiver protein  34.55 
 
 
380 aa  64.7  0.0000000004  Dickeya dadantii Ech703  Bacteria  normal  0.700678  n/a   
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  34.91 
 
 
965 aa  64.7  0.0000000004  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal 
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  34.29 
 
 
449 aa  64.7  0.0000000004  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_011831  Cagg_0862  response regulator receiver protein  33.61 
 
 
293 aa  64.7  0.0000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.747276  normal  0.358 
 
 
-
 
NC_007204  Psyc_0720  response regulator receiver, fis type  25.21 
 
 
312 aa  64.3  0.0000000005  Psychrobacter arcticus 273-4  Bacteria  normal  0.935409  normal 
 
 
-
 
NC_012918  GM21_0653  response regulator receiver modulated metal dependent phosphohydrolase  32.17 
 
 
345 aa  64.3  0.0000000005  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.6785900000000002e-24 
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  35.34 
 
 
185 aa  64.3  0.0000000005  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  34.51 
 
 
439 aa  64.3  0.0000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  33.33 
 
 
371 aa  64.3  0.0000000006  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5532  PAS/PAC sensor hybrid histidine kinase  37.4 
 
 
890 aa  63.9  0.0000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3582  multi-sensor signal transduction histidine kinase  41.82 
 
 
516 aa  63.5  0.0000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0103358 
 
 
-
 
NC_009457  VC0395_A0605  response regulator  32.11 
 
 
536 aa  63.2  0.000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2229  multi-sensor hybrid histidine kinase  36.13 
 
 
925 aa  63.2  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.843602  normal 
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  33.65 
 
 
496 aa  62  0.000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_004347  SO_2541  response regulator  31.82 
 
 
441 aa  62.4  0.000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
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