| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3371 |
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| Symbol | |
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| ID | 4075270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 383222 |
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| End bp | 385885 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004879 |
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| Product | histidine kinase |
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| Protein accession | YP_611605 |
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| Protein GI | 99078347 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.564838 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGCCC ACAGGACGAG CAAGGAAACC CCAGACGTGA GTGTCACCCG GGAGAGACCG
GGCCCCGTTT TATGCAACGC CCTCGACATC CTCGATGAAG GCTTTGTGCT CTTTGATCGC
GACCGCAAGC TGGTGTTTGC CAACAAGAGC TACGCCGCGA TGCTCGGCCC GCATGCACAT
CTTCTGGAAC CAGGCCGCGC CATGCAGGAA ATCATCAGCC AGGCAGTCGC AAGTGGCCAT
ATCAGGATCC TGCGCGGCGC AGAGCAGGGC ATGCCAGCAT TCTTGGCCGC GCTCGGCACA
CTAGATAGCG CCACGATCGA GATTTCGGTC AAAGACGGCA CCCAGCGCGA GATCAACCTG
ACCTGTCTGG AAGATGGCCA CCTTGTCGCC AAGGTCAAAG ACGTGACCGA GCAGCGCACG
GCAGAGGCGC GCGCACGCAC GCTTCTGAAC AAGGCGATCG ACGCGGTTGA TTTTGGGATC
GCACTCACCG ACGAAAACGA CAGGCTTGTC TTTGCCAACC AGAAGTATCG CGAAGTCGCA
GATCCCGATG GCGCCCTCCT TGAACCTGGT AGGCACATCG TCGAGGCCTA TTCACAGGCC
ATCGAGACCG GCGTTTTCCA ACTGCCCGAA GGTAGCACTG CGGCTGAGAT CCTGTCAGAG
CTGCAAGACC TGATTGGAAG TGCGGCGAAG GGATTTTCAC TCACCAGTTC TACCGGACGC
GAGATCGTCG GCAACATCTA CGAGACTGAC CTCGGAGGTA AGCTGCTGAC GTTGGAAGAT
GTGACCGATC AGTTGCGGGC CGAACGGCTA TACACGGATG CGGTTGGGCG GCTGCCGGTT
GGCGTCGCCA TTGAGGAAGC ATCGGGGACG CTGTCCCACT GCAACAACGC CTTTGCCGAA
CCTTTCGGAC ATTCCGCAGA AGACTTGATG AAACTCAGCG ATACCGAGCG TTTCTTGTCC
CTTGCGCCTA TGATCCAATC CATCGCGGGA CAGGATGTTG GCACGCGCGG AGTCGAAATC
TTTAGCGCCG CGATTAAAAA GCAGAGAGAC ACCCTGCAGC CGATGGAGGT CTGTTTTAGA
AACGGGCGCC ATTTCCTCGT GGAGCGCGCG ATAACCGAGG GCGACGGTCG CGTGGTCGTA
GTCACGGAAA CCACGGCATT GAAAGAAGCA GAACGACGGA GTCTCGAGAC CCTGACCGAT
ACGATCCAGT CCTTGGAGGA GGGGCTTGTC GTCTTTGACA GCGATGCGGG GTTCTTGCTC
GGCAACCGGC GCTGGCGGGA TCTGTTCTTC GGCGATACTT CCGAGCCCGC CCCCGGCGAG
CGGGTCTCGA TGCTCTGGCA GCGCCTGGTA TGCGCCGGTG CGATCTGCAC ACCCGCAGGC
ACCACGCCCG AGGCCTACGC CCAGCAACTC GACCAGTTCA CTCAATCACT GGGGCAGAAC
GAAACTCTGT TTCTGCGCGA CGGGAAAACT CTTCTTGTTT CAGCACATAG GACCGAGCAG
CAGGGCTTTT TGCTCACCTT CGTGGATGTC ACCGAACAAA GACGCGCCGA AGCGGAGCAG
CGCGAAGCGG ACCTATTGCT GCGCAAGATC GTCGATGCAT GCCCTGCCAA CTTTCTTGTC
TCGCGGGTCG ACGATGGCAA GATCATCTAT TGCCCTCCGC CGTCGCGCGA ACGCTTTGGC
AACATCACCT CGACCCTCAG CTTTTTCCTG AACGCAGAAG ACCGCCAGAC ATATCTTGAT
GCTTTGTTGC CCACTGGCGC GCTTGATGAT TACCGCGTCC AGTTTCGCCG CGCCGATGGC
TCGATCATGC AGGGCATCAC GGCTGCGCGG GTCACCGAAT ACAAGGGCGA GCAAGTGATC
GTCTCCTCTA CGCGGGACAT CTCTGATCTG CTTGCGATGC AGGAAGAGCT GCAGCAACAG
CGTGATGCCG CGCATCAAGC CGAAAAGCTA TCAGCGCTGG GGGAGCTGCT CGCTGGGGTT
GCCCATGAGC TGAACAATCC ACTGTCCATT ATTGTGGGAT ATGCACAAAT GCTAGAGGGC
CGCCTTCAGG ACAAGGTGCT CTCCAAACGC GTGGACCGGA TCGCCGAAGC GGCGGACCGC
AGTGCGCGGA TCGTGCGCGC GTTCCTTGCC ATGGCGCGGC AACGCCCAAC CAAGATCGAA
CCGTGCTCGC TCAACGACAT CGTACTCGCC GCACTCGATG TTGCTGGATA CGGAATGCGC
AGCAGCGGGA CCGAGATCCT TTCTGAACTT GATGACGACC TGCCCTTGGT TTCGGGGGAC
GCCGACCAGC TTGTGCAGGT GTTCTCCAAC CTCATCATCA ACGCTGAACA AGCGCTGGCG
CCCCTTGGAC AGGCCGGCCG CCTGACGATC CGGTCGTCCT TTGACCCGGC GCAGAACCAA
TCGGTCGTGG AAATTCGTGA CAATGGCCCC GGCATACCCG CCGCGATCAG GGCGCGGATA
TTCGAGCCCT TCTTCACAAC CAAGGATGTC GGAAAAGGCA CCGGGATCGG CCTCGCCTTC
AGCCACCGGA TCGTCGATGC CCATGGCGGC CAGCTGGATC TTGAGACGAC CGAGGGGGAA
GGCACGCGCT TCTTTGTGCG CCTTGGTGTT CATGACACAG GCAGACCGCT GAAAAATGAT
CCCGAAGACG ACACAACCCC ATAA
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| Protein sequence | MHAHRTSKET PDVSVTRERP GPVLCNALDI LDEGFVLFDR DRKLVFANKS YAAMLGPHAH
LLEPGRAMQE IISQAVASGH IRILRGAEQG MPAFLAALGT LDSATIEISV KDGTQREINL
TCLEDGHLVA KVKDVTEQRT AEARARTLLN KAIDAVDFGI ALTDENDRLV FANQKYREVA
DPDGALLEPG RHIVEAYSQA IETGVFQLPE GSTAAEILSE LQDLIGSAAK GFSLTSSTGR
EIVGNIYETD LGGKLLTLED VTDQLRAERL YTDAVGRLPV GVAIEEASGT LSHCNNAFAE
PFGHSAEDLM KLSDTERFLS LAPMIQSIAG QDVGTRGVEI FSAAIKKQRD TLQPMEVCFR
NGRHFLVERA ITEGDGRVVV VTETTALKEA ERRSLETLTD TIQSLEEGLV VFDSDAGFLL
GNRRWRDLFF GDTSEPAPGE RVSMLWQRLV CAGAICTPAG TTPEAYAQQL DQFTQSLGQN
ETLFLRDGKT LLVSAHRTEQ QGFLLTFVDV TEQRRAEAEQ READLLLRKI VDACPANFLV
SRVDDGKIIY CPPPSRERFG NITSTLSFFL NAEDRQTYLD ALLPTGALDD YRVQFRRADG
SIMQGITAAR VTEYKGEQVI VSSTRDISDL LAMQEELQQQ RDAAHQAEKL SALGELLAGV
AHELNNPLSI IVGYAQMLEG RLQDKVLSKR VDRIAEAADR SARIVRAFLA MARQRPTKIE
PCSLNDIVLA ALDVAGYGMR SSGTEILSEL DDDLPLVSGD ADQLVQVFSN LIINAEQALA
PLGQAGRLTI RSSFDPAQNQ SVVEIRDNGP GIPAAIRARI FEPFFTTKDV GKGTGIGLAF
SHRIVDAHGG QLDLETTEGE GTRFFVRLGV HDTGRPLKND PEDDTTP
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