More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_2566 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010682  Rpic_2976  response regulator receiver sensor signal transduction histidine kinase  95.38 
 
 
368 aa  719    Ralstonia pickettii 12J  Bacteria  normal  0.598418  normal 
 
 
-
 
NC_012856  Rpic12D_2566  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
369 aa  756    Ralstonia pickettii 12D  Bacteria  normal  normal  0.236818 
 
 
-
 
NC_003295  RSc2737  two component response regulator transcription regulator protein  82.35 
 
 
374 aa  603  1.0000000000000001e-171  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2950  response regulator receiver sensor signal transduction histidine kinase  56.87 
 
 
378 aa  398  9.999999999999999e-111  Cupriavidus metallidurans CH34  Bacteria  normal  0.37884  normal 
 
 
-
 
NC_007347  Reut_A2813  response regulator receiver sensor signal transduction histidine kinase  56.91 
 
 
377 aa  387  1e-106  Ralstonia eutropha JMP134  Bacteria  normal  0.963287  n/a   
 
 
-
 
NC_007952  Bxe_B2007  response regulator receiver sensor signal transduction histidine kinase  51.61 
 
 
388 aa  346  4e-94  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000116465  normal  0.0324755 
 
 
-
 
NC_010676  Bphyt_4751  response regulator receiver sensor signal transduction histidine kinase  52.88 
 
 
384 aa  325  1e-87  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0259995  normal  0.0850645 
 
 
-
 
NC_008781  Pnap_3728  response regulator receiver sensor signal transduction histidine kinase  43.54 
 
 
395 aa  277  2e-73  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.439666  normal  0.0786529 
 
 
-
 
NC_007952  Bxe_B2691  response regulator receiver domain-containing protein  50.4 
 
 
134 aa  120  3e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1289  response regulator receiver protein  49.18 
 
 
134 aa  111  3e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  0.295021  normal  0.0758601 
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  23.59 
 
 
359 aa  107  4e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_007347  Reut_A2812  response regulator receiver  41.01 
 
 
335 aa  103  7e-21  Ralstonia eutropha JMP134  Bacteria  normal  0.101507  n/a   
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  24.4 
 
 
365 aa  102  8e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2949  response regulator receiver domain-containing protein  37.33 
 
 
332 aa  99.4  8e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2689  response regulator receiver domain-containing protein  39.57 
 
 
339 aa  99  1e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.579235  normal 
 
 
-
 
NC_003295  RSc2738  response regulator transcription regulator protein  37.11 
 
 
336 aa  97.8  3e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1291  response regulator receiver protein  38.85 
 
 
336 aa  97.8  3e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.127237  normal  0.0846123 
 
 
-
 
NC_012856  Rpic12D_2567  response regulator receiver protein  36.48 
 
 
339 aa  96.7  6e-19  Ralstonia pickettii 12D  Bacteria  normal  normal  0.342173 
 
 
-
 
NC_010682  Rpic_2977  response regulator receiver protein  36.48 
 
 
339 aa  95.5  1e-18  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  26.79 
 
 
371 aa  94.4  3e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1801  integral membrane sensor hybrid histidine kinase  28.57 
 
 
699 aa  93.6  4e-18  Chlorobium phaeobacteroides DSM 266  Bacteria  unclonable  0.00000631548  n/a   
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  25.74 
 
 
374 aa  94  4e-18  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  26.93 
 
 
379 aa  94  4e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4539  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  26.8 
 
 
1152 aa  92.8  9e-18  Ralstonia eutropha JMP134  Bacteria  normal  0.329946  n/a   
 
 
-
 
NC_013173  Dbac_2272  response regulator receiver sensor signal transduction histidine kinase  27.08 
 
 
382 aa  92  1e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.275022  n/a   
 
 
-
 
NC_008043  TM1040_3371  histidine kinase  31.58 
 
 
887 aa  92  1e-17  Ruegeria sp. TM1040  Bacteria  normal  normal  0.564838 
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  35.42 
 
 
154 aa  91.3  2e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7077  periplasmic sensor signal transduction histidine kinase  30.42 
 
 
480 aa  91.3  3e-17  Burkholderia sp. 383  Bacteria  normal  normal  0.871735 
 
 
-
 
NC_010511  M446_6110  PAS/PAC sensor signal transduction histidine kinase  33.59 
 
 
513 aa  89.7  7e-17  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0621826 
 
 
-
 
NC_008781  Pnap_3729  response regulator receiver protein  38.06 
 
 
323 aa  89.7  8e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.800159  normal  0.0418103 
 
 
-
 
NC_009675  Anae109_2440  response regulator receiver sensor signal transduction histidine kinase  27.27 
 
 
375 aa  89  1e-16  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.467167  normal  0.627522 
 
 
-
 
NC_008700  Sama_2212  putative two-component sensor histidine kinase protein  28.4 
 
 
600 aa  87.8  2e-16  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5398  sensor histidine kinase  30.35 
 
 
602 aa  87.4  4e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3506  ATP-binding region, ATPase-like  30.2 
 
 
496 aa  86.7  7e-16  Ralstonia eutropha JMP134  Bacteria  normal  0.0457672  n/a   
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  36.43 
 
 
410 aa  85.9  9e-16  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0927  integral membrane sensor hybrid histidine kinase  28.26 
 
 
704 aa  85.5  0.000000000000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0769186  normal 
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  24.87 
 
 
379 aa  85.9  0.000000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_008825  Mpe_A0208  PAS/PAC sensor signal transduction histidine kinase  30.71 
 
 
708 aa  84.7  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.832424 
 
 
-
 
NC_002939  GSU1119  sensor histidine kinase/response regulator  23.59 
 
 
420 aa  84  0.000000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  37.78 
 
 
823 aa  84.3  0.000000000000003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  25.36 
 
 
395 aa  84.3  0.000000000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.00858549 
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
484 aa  84.3  0.000000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  25.46 
 
 
379 aa  84.3  0.000000000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_003295  RSc2923  putative transmembrane sensor histidine kinase transcription regulator protein  25.27 
 
 
410 aa  84  0.000000000000004  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.950573 
 
 
-
 
NC_008346  Swol_2547  response regulator receiver protein  32.96 
 
 
395 aa  83.6  0.000000000000005  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2006  periplasmic sensor hybrid histidine kinase  30.04 
 
 
852 aa  83.6  0.000000000000006  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000507491  normal  0.0782006 
 
 
-
 
NC_013037  Dfer_2392  response regulator receiver sensor signal transduction histidine kinase  23.94 
 
 
363 aa  83.2  0.000000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  33.79 
 
 
151 aa  83.2  0.000000000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  22.66 
 
 
391 aa  82.4  0.00000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4654  PAS/PAC sensor signal transduction histidine kinase  29.27 
 
 
707 aa  82.4  0.00000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3892  PAS/PAC sensor signal transduction histidine kinase  30.77 
 
 
512 aa  82  0.00000000000001  Methylobacterium populi BJ001  Bacteria  normal  normal  0.234407 
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  29.65 
 
 
475 aa  82.4  0.00000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  36.55 
 
 
515 aa  81.6  0.00000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  25.93 
 
 
372 aa  81.3  0.00000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  27.15 
 
 
383 aa  81.3  0.00000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011071  Smal_3433  response regulator receiver sensor hybrid histidine kinase  26.91 
 
 
503 aa  80.9  0.00000000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.812028  normal  0.0364545 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  36.43 
 
 
1180 aa  80.9  0.00000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  29.93 
 
 
154 aa  80.9  0.00000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  37.82 
 
 
1111 aa  80.1  0.00000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  31.5 
 
 
309 aa  80.5  0.00000000000005  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_011146  Gbem_1662  response regulator receiver sensor signal transduction histidine kinase  24.08 
 
 
396 aa  79.7  0.00000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2116  PAS/PAC sensor signal transduction histidine kinase  29.8 
 
 
524 aa  79.7  0.00000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1066  histidine kinase  27.8 
 
 
585 aa  79.3  0.00000000000009  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00233017 
 
 
-
 
NC_014148  Plim_3061  ATP-binding region ATPase domain protein  24.43 
 
 
863 aa  79  0.0000000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.141845  n/a   
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  35.9 
 
 
495 aa  79  0.0000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2551  response regulator receiver sensor signal transduction histidine kinase  23.83 
 
 
396 aa  79  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  1.14529e-19 
 
 
-
 
NC_009523  RoseRS_0231  GAF sensor hybrid histidine kinase  29.27 
 
 
844 aa  77.8  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.794534  normal  0.63544 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  32 
 
 
557 aa  78.2  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  36.17 
 
 
1156 aa  78.6  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  26.83 
 
 
355 aa  78.2  0.0000000000002  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_007953  Bxe_C0018  seriplasmic sensor signal transduction histidine kinase  29.02 
 
 
409 aa  78.6  0.0000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.702355 
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  37.19 
 
 
303 aa  78.6  0.0000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0344  PAS/PAC sensor signal transduction histidine kinase  23.53 
 
 
459 aa  77.8  0.0000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.337335  normal  0.899671 
 
 
-
 
NC_008609  Ppro_2968  response regulator receiver sensor signal transduction histidine kinase  23.59 
 
 
392 aa  77.4  0.0000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1745  response regulator receiver sensor signal transduction histidine kinase  22.38 
 
 
417 aa  77.8  0.0000000000003  Geobacter lovleyi SZ  Bacteria  normal  0.0330192  n/a   
 
 
-
 
NC_007005  Psyr_4937  sensor histidine kinase  28.79 
 
 
604 aa  77.4  0.0000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2687  response regulator receiver sensor signal transduction histidine kinase  23.66 
 
 
1013 aa  77.4  0.0000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.70216  normal 
 
 
-
 
NC_009720  Xaut_0632  PAS/PAC sensor hybrid histidine kinase  24.9 
 
 
695 aa  77.4  0.0000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  0.554525  normal 
 
 
-
 
NC_010814  Glov_3153  response regulator receiver sensor signal transduction histidine kinase  24.02 
 
 
366 aa  77.4  0.0000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  29.45 
 
 
270 aa  77.4  0.0000000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  38.14 
 
 
473 aa  77  0.0000000000005  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  24.77 
 
 
406 aa  77  0.0000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_010551  BamMC406_2789  integral membrane sensor signal transduction histidine kinase  30.15 
 
 
677 aa  76.6  0.0000000000006  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_1751  integral membrane sensor signal transduction histidine kinase  23.02 
 
 
671 aa  76.6  0.0000000000006  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3366  PAS/PAC sensor signal transduction histidine kinase  30.24 
 
 
716 aa  76.3  0.0000000000007  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  26.19 
 
 
383 aa  76.6  0.0000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5606  integral membrane sensor signal transduction histidine kinase  33.99 
 
 
485 aa  76.6  0.0000000000007  Burkholderia phymatum STM815  Bacteria  normal  0.195097  normal 
 
 
-
 
NC_010505  Mrad2831_2578  PAS/PAC sensor signal transduction histidine kinase  28.52 
 
 
527 aa  76.3  0.0000000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.376758  normal 
 
 
-
 
NC_008390  Bamb_2927  periplasmic sensor signal transduction histidine kinase  30.15 
 
 
672 aa  76.3  0.0000000000008  Burkholderia ambifaria AMMD  Bacteria  normal  0.600674  n/a   
 
 
-
 
NC_007517  Gmet_0696  histidine kinase  29.88 
 
 
248 aa  75.5  0.000000000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0073771  normal 
 
 
-
 
NC_009483  Gura_2115  integral membrane sensor signal transduction histidine kinase  27.04 
 
 
604 aa  75.9  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00123104  n/a   
 
 
-
 
NC_013440  Hoch_3303  integral membrane sensor signal transduction histidine kinase  27.3 
 
 
496 aa  75.5  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.739503  normal  0.406153 
 
 
-
 
NC_009253  Dred_1311  sensory histidine kinase AtoS  27.57 
 
 
614 aa  75.9  0.000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3419  sensor histidine kinase  27.76 
 
 
774 aa  74.7  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS05203  two-component transmembrane sensor histidine kinase transcription regulator protein  29.27 
 
 
461 aa  75.1  0.000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0394987  normal  0.0112976 
 
 
-
 
NC_010717  PXO_04306  histidine kinase-response regulator hybrid protein  27.16 
 
 
500 aa  75.1  0.000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.717782  n/a   
 
 
-
 
NC_011769  DvMF_1773  response regulator receiver sensor signal transduction histidine kinase  26.32 
 
 
408 aa  75.1  0.000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  37.61 
 
 
1172 aa  75.1  0.000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_013440  Hoch_5143  response regulator receiver sensor signal transduction histidine kinase  24.94 
 
 
408 aa  74.7  0.000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19932  normal 
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  30.56 
 
 
154 aa  74.7  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
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