More than 300 homologs were found in PanDaTox collection
for query gene Rmet_2949 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_2949  response regulator receiver domain-containing protein  100 
 
 
332 aa  668    Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2812  response regulator receiver  78.68 
 
 
335 aa  536  1e-151  Ralstonia eutropha JMP134  Bacteria  normal  0.101507  n/a   
 
 
-
 
NC_007952  Bxe_B2689  response regulator receiver domain-containing protein  76.81 
 
 
339 aa  519  1e-146  Burkholderia xenovorans LB400  Bacteria  normal  0.579235  normal 
 
 
-
 
NC_010681  Bphyt_1291  response regulator receiver protein  75.6 
 
 
336 aa  511  1e-144  Burkholderia phytofirmans PsJN  Bacteria  normal  0.127237  normal  0.0846123 
 
 
-
 
NC_010682  Rpic_2977  response regulator receiver protein  51.64 
 
 
339 aa  326  3e-88  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2567  response regulator receiver protein  52.8 
 
 
339 aa  322  5e-87  Ralstonia pickettii 12D  Bacteria  normal  normal  0.342173 
 
 
-
 
NC_003295  RSc2738  response regulator transcription regulator protein  49.85 
 
 
336 aa  305  6e-82  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3729  response regulator receiver protein  44.33 
 
 
323 aa  193  4e-48  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.800159  normal  0.0418103 
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  41.36 
 
 
410 aa  138  1e-31  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2813  response regulator receiver sensor signal transduction histidine kinase  39.46 
 
 
377 aa  110  2.0000000000000002e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.963287  n/a   
 
 
-
 
NC_007973  Rmet_2950  response regulator receiver sensor signal transduction histidine kinase  36.51 
 
 
378 aa  108  9.000000000000001e-23  Cupriavidus metallidurans CH34  Bacteria  normal  0.37884  normal 
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  36.05 
 
 
154 aa  103  3e-21  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_003295  RSc2737  two component response regulator transcription regulator protein  40 
 
 
374 aa  103  5e-21  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1289  response regulator receiver protein  43.59 
 
 
134 aa  103  5e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  0.295021  normal  0.0758601 
 
 
-
 
NC_008781  Pnap_3728  response regulator receiver sensor signal transduction histidine kinase  43.59 
 
 
395 aa  102  6e-21  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.439666  normal  0.0786529 
 
 
-
 
NC_007952  Bxe_B2007  response regulator receiver sensor signal transduction histidine kinase  38.78 
 
 
388 aa  102  1e-20  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000116465  normal  0.0324755 
 
 
-
 
NC_010682  Rpic_2976  response regulator receiver sensor signal transduction histidine kinase  38 
 
 
368 aa  102  1e-20  Ralstonia pickettii 12J  Bacteria  normal  0.598418  normal 
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  39.69 
 
 
187 aa  99.8  6e-20  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  33.11 
 
 
151 aa  99.8  6e-20  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_012856  Rpic12D_2566  response regulator receiver sensor signal transduction histidine kinase  37.33 
 
 
369 aa  99.4  8e-20  Ralstonia pickettii 12D  Bacteria  normal  normal  0.236818 
 
 
-
 
NC_007952  Bxe_B2691  response regulator receiver domain-containing protein  42.24 
 
 
134 aa  99  9e-20  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4751  response regulator receiver sensor signal transduction histidine kinase  38.19 
 
 
384 aa  98.6  1e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0259995  normal  0.0850645 
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  34.23 
 
 
154 aa  97.4  3e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  38.35 
 
 
496 aa  94.7  2e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  36.57 
 
 
484 aa  94  3e-18  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  41.27 
 
 
303 aa  93.2  5e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  40 
 
 
185 aa  92.4  1e-17  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  37.41 
 
 
491 aa  91.7  2e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  37.41 
 
 
491 aa  91.7  2e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  36.54 
 
 
492 aa  90.5  3e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  33.33 
 
 
365 aa  90.5  3e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03496  response regulator  35.06 
 
 
434 aa  90.9  3e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  33.33 
 
 
1180 aa  90.5  4e-17  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_007651  BTH_I0615  response regulator  40.91 
 
 
484 aa  90.1  5e-17  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_009656  PSPA7_2273  putative two-component response regulator  40.48 
 
 
304 aa  89.7  7e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.438912  n/a   
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  37.91 
 
 
1111 aa  89.4  8e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_002947  PP_2942  response regulator  41.22 
 
 
456 aa  88.6  1e-16  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  40 
 
 
473 aa  88.6  1e-16  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  33.83 
 
 
1172 aa  88.6  1e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  39.13 
 
 
456 aa  87.8  2e-16  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  34.48 
 
 
495 aa  87.8  2e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  37.06 
 
 
451 aa  88.2  2e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  40.44 
 
 
515 aa  88.2  2e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  36.36 
 
 
270 aa  88.2  2e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008062  Bcen_5575  response regulator receiver modulated metal dependent phosphohydrolase  41.67 
 
 
472 aa  87.8  2e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_5939  response regulator receiver modulated metal dependent phosphohydrolase  41.67 
 
 
472 aa  87.8  2e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.862183 
 
 
-
 
NC_009720  Xaut_2184  two component, sigma54 specific, Fis family transcriptional regulator  35.14 
 
 
497 aa  87.4  3e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.682977  normal  0.229753 
 
 
-
 
NC_007908  Rfer_1982  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.64 
 
 
1355 aa  87.8  3e-16  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1956  two component, sigma54 specific, Fis family transcriptional regulator  32.1 
 
 
486 aa  87.4  3e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.696783  normal 
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  39.34 
 
 
965 aa  87  4e-16  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal 
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  40.15 
 
 
481 aa  87  4e-16  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  40.15 
 
 
481 aa  87  4e-16  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  40.15 
 
 
481 aa  87  4e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0731  response regulator  40.16 
 
 
476 aa  87  4e-16  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  35.42 
 
 
449 aa  87  4e-16  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_009080  BMA10247_2469  response regulator  40.15 
 
 
481 aa  87  4e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  40.15 
 
 
481 aa  87  4e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2541  response regulator  39.69 
 
 
441 aa  86.7  6e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  36.3 
 
 
154 aa  86.7  6e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  33.33 
 
 
1156 aa  86.7  6e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_009074  BURPS668_0745  response regulator/HD domain-containing protein  40.15 
 
 
481 aa  86.3  6e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2839  GAF(s) sensor(s)-containing protein serine phosphatase  33.83 
 
 
557 aa  86.3  6e-16  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2231  response regulator  41.54 
 
 
475 aa  85.1  0.000000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6441  response regulator receiver modulated metal dependent phosphohydrolase  40 
 
 
470 aa  85.1  0.000000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5980  response regulator receiver modulated metal dependent phosphohydrolase  40.83 
 
 
469 aa  84.7  0.000000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1423  response regulator receiver (CheY) and GAF domain-containing protein  31.65 
 
 
315 aa  84.7  0.000000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  33.09 
 
 
475 aa  84.7  0.000000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4317  response regulator receiver modulated GAF sensor protein  31.03 
 
 
317 aa  84.7  0.000000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.248315  n/a   
 
 
-
 
NC_008392  Bamb_6276  response regulator receiver modulated metal dependent phosphohydrolase  40.83 
 
 
469 aa  84.7  0.000000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0711  response regulator  40.77 
 
 
518 aa  84  0.000000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  0.226782  n/a   
 
 
-
 
NC_008609  Ppro_2722  response regulator receiver modulated metal dependent phosphohydrolase  40.8 
 
 
444 aa  84  0.000000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  36.84 
 
 
479 aa  84  0.000000000000003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  33.33 
 
 
359 aa  84  0.000000000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  39.53 
 
 
452 aa  83.6  0.000000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0261  response regulator  40 
 
 
439 aa  83.6  0.000000000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1662  response regulator  40.77 
 
 
475 aa  84  0.000000000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  35.34 
 
 
493 aa  84  0.000000000000004  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A2314  response regulator  40.77 
 
 
475 aa  84  0.000000000000004  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1716  response regulator  40.77 
 
 
475 aa  84  0.000000000000004  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0599  response regulator  40.77 
 
 
475 aa  84  0.000000000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1923  response regulator  40.77 
 
 
475 aa  84  0.000000000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  0.537818  n/a   
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  35.71 
 
 
438 aa  83.6  0.000000000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2094  response regulator  34.56 
 
 
329 aa  83.2  0.000000000000006  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2367  response regulator receiver modulated metal dependent phosphohydrolase  39.55 
 
 
538 aa  83.2  0.000000000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  32.35 
 
 
189 aa  82.8  0.000000000000007  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  32.33 
 
 
557 aa  82.8  0.000000000000007  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_013422  Hneap_1427  response regulator receiver protein  33.56 
 
 
311 aa  82.8  0.000000000000007  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3805  response regulator receiver domain-containing protein  34.06 
 
 
439 aa  82.8  0.000000000000008  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  31.91 
 
 
823 aa  82.4  0.000000000000009  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  30.54 
 
 
309 aa  82.4  0.000000000000009  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_008639  Cpha266_1833  putative PAS/PAC sensor protein  34.07 
 
 
560 aa  82.4  0.00000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1766  response regulator receiver domain-containing protein  33.33 
 
 
311 aa  81.6  0.00000000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.143421 
 
 
-
 
NC_009457  VC0395_A0606  response regulator  36.64 
 
 
447 aa  81.3  0.00000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  32.5 
 
 
439 aa  81.3  0.00000000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3971  putative GAF sensor protein  33.61 
 
 
312 aa  81.3  0.00000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  31.76 
 
 
553 aa  81.6  0.00000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_2547  response regulator receiver protein  36.75 
 
 
395 aa  81.3  0.00000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.28 
 
 
994 aa  80.1  0.00000000000005  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_013440  Hoch_5448  response regulator receiver protein  32.8 
 
 
130 aa  80.1  0.00000000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.122497 
 
 
-
 
NC_007760  Adeh_3472  response regulator receiver sensor signal transduction histidine kinase  33.76 
 
 
520 aa  79.3  0.00000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
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