More than 300 homologs were found in PanDaTox collection
for query gene Pnap_3728 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_3728  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
395 aa  794    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.439666  normal  0.0786529 
 
 
-
 
NC_010682  Rpic_2976  response regulator receiver sensor signal transduction histidine kinase  45.07 
 
 
368 aa  298  1e-79  Ralstonia pickettii 12J  Bacteria  normal  0.598418  normal 
 
 
-
 
NC_012856  Rpic12D_2566  response regulator receiver sensor signal transduction histidine kinase  44.33 
 
 
369 aa  294  2e-78  Ralstonia pickettii 12D  Bacteria  normal  normal  0.236818 
 
 
-
 
NC_003295  RSc2737  two component response regulator transcription regulator protein  43.12 
 
 
374 aa  287  2.9999999999999996e-76  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2950  response regulator receiver sensor signal transduction histidine kinase  42.02 
 
 
378 aa  278  1e-73  Cupriavidus metallidurans CH34  Bacteria  normal  0.37884  normal 
 
 
-
 
NC_007347  Reut_A2813  response regulator receiver sensor signal transduction histidine kinase  41.91 
 
 
377 aa  277  2e-73  Ralstonia eutropha JMP134  Bacteria  normal  0.963287  n/a   
 
 
-
 
NC_007952  Bxe_B2007  response regulator receiver sensor signal transduction histidine kinase  39.11 
 
 
388 aa  249  8e-65  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.000116465  normal  0.0324755 
 
 
-
 
NC_010676  Bphyt_4751  response regulator receiver sensor signal transduction histidine kinase  39.05 
 
 
384 aa  234  2.0000000000000002e-60  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0259995  normal  0.0850645 
 
 
-
 
NC_007952  Bxe_B2691  response regulator receiver domain-containing protein  50.43 
 
 
134 aa  117  3.9999999999999997e-25  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1289  response regulator receiver protein  52.68 
 
 
134 aa  115  1.0000000000000001e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.295021  normal  0.0758601 
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  22.43 
 
 
359 aa  111  2.0000000000000002e-23  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  40.52 
 
 
410 aa  109  1e-22  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1745  response regulator receiver sensor signal transduction histidine kinase  26.57 
 
 
417 aa  105  1e-21  Geobacter lovleyi SZ  Bacteria  normal  0.0330192  n/a   
 
 
-
 
NC_007347  Reut_A2812  response regulator receiver  38.64 
 
 
335 aa  105  2e-21  Ralstonia eutropha JMP134  Bacteria  normal  0.101507  n/a   
 
 
-
 
NC_013037  Dfer_2392  response regulator receiver sensor signal transduction histidine kinase  24.02 
 
 
363 aa  105  2e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  39.78 
 
 
1111 aa  105  2e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_008781  Pnap_3729  response regulator receiver protein  43.18 
 
 
323 aa  104  3e-21  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.800159  normal  0.0418103 
 
 
-
 
NC_007973  Rmet_2949  response regulator receiver domain-containing protein  37.65 
 
 
332 aa  103  4e-21  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2689  response regulator receiver domain-containing protein  36.05 
 
 
339 aa  101  2e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.579235  normal 
 
 
-
 
NC_010681  Bphyt_1291  response regulator receiver protein  36.47 
 
 
336 aa  100  5e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  0.127237  normal  0.0846123 
 
 
-
 
NC_012856  Rpic12D_2567  response regulator receiver protein  35.53 
 
 
339 aa  99  1e-19  Ralstonia pickettii 12D  Bacteria  normal  normal  0.342173 
 
 
-
 
NC_003295  RSc2738  response regulator transcription regulator protein  43.59 
 
 
336 aa  98.6  2e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2977  response regulator receiver protein  35.71 
 
 
339 aa  97.4  4e-19  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  34.59 
 
 
270 aa  94.7  2e-18  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  32.87 
 
 
1172 aa  90.5  5e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_008751  Dvul_0403  response regulator receiver sensor signal transduction histidine kinase  29.84 
 
 
374 aa  89.7  8e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.150899 
 
 
-
 
NC_013132  Cpin_2687  response regulator receiver sensor signal transduction histidine kinase  25.88 
 
 
1013 aa  89.7  8e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.70216  normal 
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  35.71 
 
 
965 aa  89.4  9e-17  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  21.22 
 
 
365 aa  88.2  2e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3477  PAS/PAC sensor hybrid histidine kinase  35.66 
 
 
1465 aa  87.8  3e-16  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  35.86 
 
 
285 aa  87.8  3e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  30.14 
 
 
479 aa  87.4  4e-16  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5143  response regulator receiver sensor signal transduction histidine kinase  27.79 
 
 
408 aa  85.5  0.000000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19932  normal 
 
 
-
 
NC_007298  Daro_0966  type II secretion system protein E  30.22 
 
 
746 aa  85.9  0.000000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.783688 
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  36.31 
 
 
491 aa  85.5  0.000000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  36.31 
 
 
491 aa  85.5  0.000000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  24.57 
 
 
395 aa  85.5  0.000000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.00858549 
 
 
-
 
NC_008639  Cpha266_1801  integral membrane sensor hybrid histidine kinase  28.85 
 
 
699 aa  85.9  0.000000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  unclonable  0.00000631548  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  37.58 
 
 
515 aa  85.9  0.000000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  35.34 
 
 
1180 aa  85.1  0.000000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  36.64 
 
 
187 aa  85.1  0.000000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  25.13 
 
 
383 aa  85.1  0.000000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  24.34 
 
 
383 aa  85.1  0.000000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.89 
 
 
994 aa  84.3  0.000000000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  35.16 
 
 
154 aa  84.3  0.000000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_010814  Glov_3153  response regulator receiver sensor signal transduction histidine kinase  25.93 
 
 
366 aa  84.3  0.000000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7077  periplasmic sensor signal transduction histidine kinase  30.77 
 
 
480 aa  83.2  0.000000000000007  Burkholderia sp. 383  Bacteria  normal  normal  0.871735 
 
 
-
 
NC_007912  Sde_3800  response regulator receiver domain-containing protein  36.11 
 
 
488 aa  83.2  0.000000000000008  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0344  PAS/PAC sensor signal transduction histidine kinase  29.78 
 
 
459 aa  82.8  0.000000000000009  Xanthobacter autotrophicus Py2  Bacteria  normal  0.337335  normal  0.899671 
 
 
-
 
NC_009523  RoseRS_0317  response regulator receiver sensor signal transduction histidine kinase  25.89 
 
 
407 aa  82.8  0.00000000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.294431  normal  0.0468502 
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  40.5 
 
 
452 aa  82  0.00000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3068  PAS/PAC sensor hybrid histidine kinase  39.1 
 
 
622 aa  81.6  0.00000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.231547  normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  33.33 
 
 
1156 aa  82  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_010725  Mpop_2960  PAS/PAC sensor hybrid histidine kinase  39.1 
 
 
622 aa  81.6  0.00000000000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2842  PAS sensor protein  39.1 
 
 
622 aa  81.6  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.174863  normal 
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  33.76 
 
 
492 aa  81.3  0.00000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  30.26 
 
 
557 aa  80.5  0.00000000000004  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_011894  Mnod_3029  PAS/PAC sensor hybrid histidine kinase  32.73 
 
 
652 aa  80.9  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2716  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.83 
 
 
629 aa  80.9  0.00000000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2721  response regulator receiver protein  33.53 
 
 
188 aa  80.5  0.00000000000005  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  25.58 
 
 
374 aa  80.1  0.00000000000006  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_007348  Reut_B3506  ATP-binding region, ATPase-like  37.75 
 
 
496 aa  79.7  0.00000000000009  Ralstonia eutropha JMP134  Bacteria  normal  0.0457672  n/a   
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  33.33 
 
 
185 aa  79.7  0.00000000000009  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_010571  Oter_2405  response regulator receiver sensor signal transduction histidine kinase  27.44 
 
 
383 aa  79  0.0000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.109691  normal 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  32.9 
 
 
189 aa  79.3  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_1982  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.88 
 
 
1355 aa  79.3  0.0000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  38.03 
 
 
493 aa  79.3  0.0000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  34.65 
 
 
496 aa  78.2  0.0000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_013422  Hneap_1427  response regulator receiver protein  33.91 
 
 
311 aa  78.6  0.0000000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  30.19 
 
 
823 aa  78.2  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0615  response regulator  36.51 
 
 
484 aa  78.6  0.0000000000002  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_011988  Avi_6227  two component sensor kinase for C4-dicarboxylate transport  27.46 
 
 
600 aa  79  0.0000000000002  Agrobacterium vitis S4  Bacteria  normal  0.970393  n/a   
 
 
-
 
NC_011138  MADE_03496  response regulator  34.75 
 
 
434 aa  78.6  0.0000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2184  two component, sigma54 specific, Fis family transcriptional regulator  34.65 
 
 
497 aa  78.6  0.0000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.682977  normal  0.229753 
 
 
-
 
NC_007953  Bxe_C0018  seriplasmic sensor signal transduction histidine kinase  30.59 
 
 
409 aa  78.6  0.0000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.702355 
 
 
-
 
NC_008346  Swol_2547  response regulator receiver protein  34.38 
 
 
395 aa  78.2  0.0000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  30.07 
 
 
151 aa  78.2  0.0000000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  29.8 
 
 
553 aa  77.8  0.0000000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0885  response regulator receiver modulated metal dependent phosphohydrolase  32.64 
 
 
324 aa  77.8  0.0000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  34.16 
 
 
438 aa  77.4  0.0000000000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  27.73 
 
 
475 aa  77.4  0.0000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000289  sensor histidine kinase CqsS  26.24 
 
 
681 aa  77.4  0.0000000000004  Vibrio sp. Ex25  Bacteria  normal  0.487379  n/a   
 
 
-
 
NC_010676  Bphyt_4505  integral membrane sensor signal transduction histidine kinase  37.82 
 
 
480 aa  77.4  0.0000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2272  response regulator receiver sensor signal transduction histidine kinase  27.39 
 
 
382 aa  77.4  0.0000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.275022  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  36 
 
 
481 aa  77  0.0000000000005  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3375  response regulator receiver modulated metal dependent phosphohydrolase  33.82 
 
 
324 aa  77  0.0000000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  36 
 
 
481 aa  77  0.0000000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  36 
 
 
481 aa  77  0.0000000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4027  response regulator receiver modulated metal dependent phosphohydrolase  35.29 
 
 
346 aa  77  0.0000000000005  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000000247639  n/a   
 
 
-
 
NC_009080  BMA10247_2469  response regulator  36 
 
 
481 aa  77  0.0000000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  36 
 
 
481 aa  77  0.0000000000005  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  30.56 
 
 
154 aa  77  0.0000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2189  multi-sensor hybrid histidine kinase  38.35 
 
 
628 aa  77  0.0000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0671838  normal 
 
 
-
 
NC_010831  Cphamn1_0927  integral membrane sensor hybrid histidine kinase  27.27 
 
 
704 aa  76.6  0.0000000000006  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0769186  normal 
 
 
-
 
NC_009943  Dole_1776  histidine kinase  27.66 
 
 
519 aa  77  0.0000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2942  response regulator  32.9 
 
 
456 aa  76.3  0.0000000000008  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  34.67 
 
 
451 aa  76.3  0.0000000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_006348  BMA0261  response regulator  36 
 
 
439 aa  75.9  0.000000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2367  response regulator receiver modulated metal dependent phosphohydrolase  31.95 
 
 
538 aa  75.9  0.000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008639  Cpha266_0165  multi-sensor hybrid histidine kinase  26.02 
 
 
826 aa  75.9  0.000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
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