| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0972 |
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| Symbol | |
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| ID | 3570287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 1059402 |
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| End bp | 1062386 |
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| Gene Length | 2985 bp |
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| Protein Length | 994 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637679431 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_284198 |
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| Protein GI | 71906611 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.172335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATCCAG ACCAAAATTC CATCTACCCT GATCATCGGC TGCTCGGTCC CAACGGCGAC
AAGCCGCTGA TCCTCGTCGT CGACGACACG CCGATCAATC TGGAAACATT GGCCGAGATG
GTGCGCCATG CCGGCGCCAA CGCCCGGGTC GCCAACTGCG GCGCGACCGC CTTGCGTTAC
GCGCGCCTCG AACCGCGCCC CGACCTCATT CTGCTCGATA TCATGATGCC GGACATGGAT
GGCCATGCTG TCCTCGCCGA ATTGCGCCGA ATGCCGGAGA CCCGGGATAT TCCGGTCATT
TTCGTCACCG CGCTCGATGA CCAGTCCGAG GAGGAACGGG GTATCCGTGA AGGCGCGGCC
GACTACGTCA GCAAGCCGGT CAAGATGTCG GTGCTGATTG CCCGCATCCG GGCGCATCTG
GAAGTGCGCC GGGCGCAATG GCTGCTCGCC AACCAGAAAG CCTGGCTGGA ACAGGAAGTG
GAGCGGCGCA TTGCCGAAAA CACGCAACTG GATCGCCACC TGACCCTGGC CCTGGAGCGC
AGCGGCTTCG GCATCTGGGA ACACGACCCT GTGCGCAACC GTAACCGCTG GAGCGAAGGT
CTGCGTCAGA TGCTCGGCTA TGAGCAGGAA CCCGAACAGC TGGCCGAGTC CATGAACCTG
ATCCATCCCG AGGATCGCCC GGCAGTGGAG GCGCAAGTCA CCGCCAGTCT GCGGGATCGC
AACAGCATCC TGATCGGCGA ATTCCGTATT CGTCATCACG ATGGCGGCTG GCGCTGGGTC
GAATCCCGCG GCCGCATCGT CGAATTCGAT GAGGCCGGCC AGCCGACCCT GATGATCGGC
ACGATGCTCG ACATTACCGA ACGCAAACTC GCCGAAGCCG AGCATCGCCT GGCCGACCTG
GTGTTTACCG GTATCGGCGA GGGAATCTGC ATCACCGATG CCAAGCGCAA CATCCTTCGT
ATCAACGATG CCTTTTCCAC GATCACCGGC TACCAGGCCG ACGAGATCGT TGGCCAAAAT
CCGCGCCTGC TCAAATCCGG GGTGCATAGC CCGGCTTTCT ATGCCGAGAT CTGGAAAACC
ATCGATCAAT ACGGCAACTG GCAGGGCGAA ATCACCAACC GCCACAAGGA TGGCTCGCTG
GTCACCGAAT GGCTGTCCAT CAGCAGCCTG CGTGATACGA CAGGCACAGC ATCCCACTAC
ATCGGCATTT TCAGCGACCT GTCTGAACGA CAGGCTGCCG CCGAACGCAT CCAGTATCTG
TCGAGTTACG ACACCCTGAC CGAACTGCCC AACCGGCACC TGTTCGATGA CCGCCTGAAC
CAGGCCCTGC TGACGGCACG CCGCTTCGAG CGGGGTACGG CACTGATCCT GCTCGACCTG
AACCGTTTCC GGCTGATCAA CGATACCCTG GGCCCTCCGG CCGGCGACGA AATACTGGTC
GAAGTCACCC GCCGCCTGAA GTTGCAGGTG CGCGAAGGTG ACACCGTCGG TCGCCGGGCC
GGCAACGAAT TCGGTTTCGT GATGGCCAAC CTGAGCCACG AGCGGGATGC GCTGGCCCTG
GCCCAGCGCA TGCTCGATGC CATCTCGGTG CCATTTTCGG TCGCAGGCCA GTCGGTGGCG
ATCACTGCCA GCATCGGCAT CAGTGTCTTT CCCAAAAATG GTGAAAACGG CGAGGCGATG
CTCAGGTCTG CCGATGCTGC CTTGCTGCGC GCCAAGCAGT CCGGGCGCAA CACCTTCAGC
TTCTATTCGC CGGAGATGGA CGCCGATGCG GCGCGCCGCC TGTCCATCGA AAGCGCCTTG
CGCGACGCGC TGGCCCGCGA CGAGTTCTGC GTGCATTACC AGCCGCAGGT CAGTCTCGAC
AGCGGCCACA TGATCGGCAT GGAAGCACTG CTGCGCTGGA ACTCGGCCCT GCTCGGCCCT
ATCTCTCCGG TTGAATTCAT TCCCATTGCC GAGGAAACCG GGCTGATCAT GCAGATCGGC
GACTGGGTGC TACGTACGGC CTGTCACCAA ACCAAAGCCT GGCTCGATCT CGGATTGCTG
CCTTTACACG TCGCCGTCAA CCTGTCGCCC CGCCAATTCC GTCAGGCCGA CCTGCCGGCC
CAGGTCGCCC ATGCCCTGGC CGAAAGCGGC CTGCCGGCCG GGGCACTGGA ACTCGAAATC
ACCGAAAGCG CCTTCATCGA CGACATCGAC GATGCCGTCG CCATGTGCAG CAAGCTCAAG
TCCCTGGGCA TCAAACTCTC GCTCGACGAT TTCGGCACTG GCTATTCGTC GCTGGCCTAC
GTATCGCGCT TCCCCTTCGA CAAGATCAAG ATCGACCAGA GCTTCGTTCG CGACATCGTC
AACAATCCGG TCAATGCGGC CATCGCCTCG GCCGCCATCG TCATGGGCCG CAGTCTCAAC
CTGTCGGTGC TGGCCGAGGG GGTCGAAACC GAGGCTCAGG CCGCCTTTTT GCGCAGCCGG
CGGTGCGATG CCATCCAGGG CTACCTGTTC AGCCGCCCCC TGCCGCCGGA GGAGTTCGCT
CCCCTGTTGC TCAGCTGCAA GCCCTTGCCA ATCGCGGCGC TTAGCCCGGC ACAGGAGCAA
ACCCTGCTAC TGGTCGATGA CGAGCCGAAT GTGCTGAGTT CGCTAACCCG CCTGCTGCGG
CGCGAAGGCT ATGCCATTCT CACGGCCACT TCGCCGACCG AAGCCTTCGA CCTGCTGGCC
AAGCAGCCGG TACAGGTGGT TATTTCGGAT CAGCGCATGC CGGACATGTC AGGCACCGAA
TTCCTCTCCC GCGTCCGCCA GCTCTACCCG GCCACCATCC GCCTGGTGCT GACCGGCTAC
ACCGATCTCC AGTCGGTCAC CGATGCGATC AACCGCGGCG CCATCTACAA GTTCCTGACC
AAGCCATGGG ATGACGACCA ACTGCGCGAG CAGATCCGCG AGGCCTTCCG CGTGGTGCAT
TTGAATCAGG AACAGAACTT CATACCTGCC TCCCGTGAAT CCTAG
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| Protein sequence | MNPDQNSIYP DHRLLGPNGD KPLILVVDDT PINLETLAEM VRHAGANARV ANCGATALRY
ARLEPRPDLI LLDIMMPDMD GHAVLAELRR MPETRDIPVI FVTALDDQSE EERGIREGAA
DYVSKPVKMS VLIARIRAHL EVRRAQWLLA NQKAWLEQEV ERRIAENTQL DRHLTLALER
SGFGIWEHDP VRNRNRWSEG LRQMLGYEQE PEQLAESMNL IHPEDRPAVE AQVTASLRDR
NSILIGEFRI RHHDGGWRWV ESRGRIVEFD EAGQPTLMIG TMLDITERKL AEAEHRLADL
VFTGIGEGIC ITDAKRNILR INDAFSTITG YQADEIVGQN PRLLKSGVHS PAFYAEIWKT
IDQYGNWQGE ITNRHKDGSL VTEWLSISSL RDTTGTASHY IGIFSDLSER QAAAERIQYL
SSYDTLTELP NRHLFDDRLN QALLTARRFE RGTALILLDL NRFRLINDTL GPPAGDEILV
EVTRRLKLQV REGDTVGRRA GNEFGFVMAN LSHERDALAL AQRMLDAISV PFSVAGQSVA
ITASIGISVF PKNGENGEAM LRSADAALLR AKQSGRNTFS FYSPEMDADA ARRLSIESAL
RDALARDEFC VHYQPQVSLD SGHMIGMEAL LRWNSALLGP ISPVEFIPIA EETGLIMQIG
DWVLRTACHQ TKAWLDLGLL PLHVAVNLSP RQFRQADLPA QVAHALAESG LPAGALELEI
TESAFIDDID DAVAMCSKLK SLGIKLSLDD FGTGYSSLAY VSRFPFDKIK IDQSFVRDIV
NNPVNAAIAS AAIVMGRSLN LSVLAEGVET EAQAAFLRSR RCDAIQGYLF SRPLPPEEFA
PLLLSCKPLP IAALSPAQEQ TLLLVDDEPN VLSSLTRLLR REGYAILTAT SPTEAFDLLA
KQPVQVVISD QRMPDMSGTE FLSRVRQLYP ATIRLVLTGY TDLQSVTDAI NRGAIYKFLT
KPWDDDQLRE QIREAFRVVH LNQEQNFIPA SRES
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