More than 300 homologs were found in PanDaTox collection
for query gene Dfer_2388 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_2388  response regulator receiver protein  100 
 
 
154 aa  311  1.9999999999999998e-84  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  57.14 
 
 
154 aa  193  6e-49  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  53.9 
 
 
154 aa  184  3e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  57.05 
 
 
151 aa  181  2.0000000000000003e-45  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  52.78 
 
 
365 aa  158  3e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2524  response regulator receiver protein  55.47 
 
 
137 aa  157  7e-38  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  46.53 
 
 
359 aa  139  9.999999999999999e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  45.99 
 
 
515 aa  133  9e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_007908  Rfer_1982  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  47.68 
 
 
1355 aa  132  9.999999999999999e-31  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2392  response regulator receiver sensor signal transduction histidine kinase  42.76 
 
 
363 aa  130  3.9999999999999996e-30  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1423  response regulator receiver (CheY) and GAF domain-containing protein  44.44 
 
 
315 aa  129  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3477  PAS/PAC sensor hybrid histidine kinase  42 
 
 
1465 aa  124  3e-28  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_3971  putative GAF sensor protein  42.96 
 
 
312 aa  124  4.0000000000000003e-28  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4317  response regulator receiver modulated GAF sensor protein  43.06 
 
 
317 aa  124  5e-28  'Nostoc azollae' 0708  Bacteria  normal  0.248315  n/a   
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  47.58 
 
 
994 aa  122  1e-27  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  42.66 
 
 
491 aa  123  1e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  42.66 
 
 
491 aa  123  1e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  44.85 
 
 
479 aa  122  2e-27  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03496  response regulator  42.76 
 
 
434 aa  121  3e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0606  response regulator  40.69 
 
 
447 aa  121  4e-27  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  42.03 
 
 
492 aa  120  5e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_013037  Dfer_2100  response regulator receiver protein  50.89 
 
 
117 aa  120  7e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.515459 
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  44.53 
 
 
449 aa  117  3.9999999999999996e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  40.65 
 
 
303 aa  118  3.9999999999999996e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2541  response regulator  42.55 
 
 
441 aa  117  6e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  45.11 
 
 
439 aa  117  7.999999999999999e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  41.55 
 
 
438 aa  115  1.9999999999999998e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  43.94 
 
 
270 aa  115  1.9999999999999998e-25  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_2367  response regulator receiver modulated metal dependent phosphohydrolase  48.06 
 
 
538 aa  114  3e-25  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009656  PSPA7_2273  putative two-component response regulator  40.65 
 
 
304 aa  114  5e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  0.438912  n/a   
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  38.41 
 
 
965 aa  113  1.0000000000000001e-24  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal 
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  39.69 
 
 
495 aa  112  2.0000000000000002e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  40.46 
 
 
553 aa  112  2.0000000000000002e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  40.48 
 
 
493 aa  111  3e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6441  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 
470 aa  111  4.0000000000000004e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  39.84 
 
 
557 aa  111  5e-24  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  37.68 
 
 
1172 aa  111  5e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_010814  Glov_1568  response regulator receiver protein  39.47 
 
 
262 aa  110  6e-24  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  40.46 
 
 
187 aa  110  7.000000000000001e-24  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  38.97 
 
 
1180 aa  110  7.000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  45.83 
 
 
473 aa  110  1.0000000000000001e-23  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_008062  Bcen_5575  response regulator receiver modulated metal dependent phosphohydrolase  43.59 
 
 
472 aa  109  1.0000000000000001e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_5939  response regulator receiver modulated metal dependent phosphohydrolase  43.59 
 
 
472 aa  109  1.0000000000000001e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.862183 
 
 
-
 
NC_006348  BMA0261  response regulator  39.73 
 
 
439 aa  108  2.0000000000000002e-23  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0720  response regulator receiver, fis type  38.73 
 
 
312 aa  109  2.0000000000000002e-23  Psychrobacter arcticus 273-4  Bacteria  normal  0.935409  normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  38.97 
 
 
1156 aa  108  2.0000000000000002e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_010557  BamMC406_5980  response regulator receiver modulated metal dependent phosphohydrolase  45.3 
 
 
469 aa  108  2.0000000000000002e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  37.67 
 
 
285 aa  109  2.0000000000000002e-23  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6276  response regulator receiver modulated metal dependent phosphohydrolase  45.3 
 
 
469 aa  108  2.0000000000000002e-23  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1912  cyclic nucleotide-binding protein  43.65 
 
 
590 aa  108  3e-23  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0713503  normal  0.243299 
 
 
-
 
NC_011004  Rpal_1171  two component, sigma54 specific, transcriptional regulator, Fis family  39.84 
 
 
482 aa  108  3e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1427  response regulator receiver protein  41.8 
 
 
311 aa  107  4.0000000000000004e-23  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2722  response regulator receiver modulated metal dependent phosphohydrolase  39.73 
 
 
444 aa  107  4.0000000000000004e-23  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  35.82 
 
 
823 aa  107  5e-23  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  36.36 
 
 
189 aa  107  5e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  36.22 
 
 
309 aa  107  5e-23  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  42.66 
 
 
452 aa  107  6e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  37.5 
 
 
451 aa  107  7.000000000000001e-23  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_007650  BTH_II0731  response regulator  42.52 
 
 
476 aa  107  7.000000000000001e-23  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1179  sigma-54 factor, interaction region  38.28 
 
 
482 aa  106  9.000000000000001e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0557788  normal 
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  39.73 
 
 
481 aa  106  1e-22  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  39.73 
 
 
481 aa  106  1e-22  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  39.73 
 
 
481 aa  106  1e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  39.73 
 
 
481 aa  106  1e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2716  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.7 
 
 
629 aa  106  1e-22  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2469  response regulator  39.73 
 
 
481 aa  106  1e-22  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_010717  PXO_01019  Putative signal protein with GGDEF, EAL and two component receiver domains  45.69 
 
 
549 aa  105  2e-22  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.159296  n/a   
 
 
-
 
NC_010717  PXO_06147  Putative signal protein with GGDEF, EAL and two component receiver domains  45.69 
 
 
549 aa  105  2e-22  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  hitchhiker  0.0015374  n/a   
 
 
-
 
NC_009074  BURPS668_0745  response regulator/HD domain-containing protein  39.73 
 
 
481 aa  105  2e-22  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0615  response regulator  39.86 
 
 
484 aa  105  3e-22  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_007969  Pcryo_1766  response regulator receiver domain-containing protein  40.31 
 
 
311 aa  104  4e-22  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.143421 
 
 
-
 
NC_008609  Ppro_2721  response regulator receiver protein  41.22 
 
 
188 aa  104  5e-22  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2231  response regulator  41.73 
 
 
475 aa  103  6e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1923  response regulator  41.73 
 
 
475 aa  103  7e-22  Burkholderia mallei NCTC 10229  Bacteria  normal  0.537818  n/a   
 
 
-
 
NC_006349  BMAA1662  response regulator  41.73 
 
 
475 aa  103  7e-22  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0711  response regulator  41.73 
 
 
518 aa  103  7e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  0.226782  n/a   
 
 
-
 
NC_008784  BMASAVP1_1716  response regulator  41.73 
 
 
475 aa  103  7e-22  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0599  response regulator  41.73 
 
 
475 aa  103  7e-22  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2314  response regulator  41.73 
 
 
475 aa  103  7e-22  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2012  two component, sigma54 specific, Fis family transcriptional regulator  35.2 
 
 
485 aa  103  1e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_2288  response regulator receiver domain-containing protein  42.15 
 
 
322 aa  101  3e-21  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.217152 
 
 
-
 
NC_014248  Aazo_2839  GAF(s) sensor(s)-containing protein serine phosphatase  36.64 
 
 
557 aa  101  3e-21  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  37.3 
 
 
496 aa  100  5e-21  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_007925  RPC_3757  two component, sigma54 specific, Fis family transcriptional regulator  36 
 
 
499 aa  101  5e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2942  response regulator  36.11 
 
 
456 aa  100  8e-21  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  36.11 
 
 
456 aa  100  8e-21  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  34.07 
 
 
475 aa  100  8e-21  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  35.34 
 
 
484 aa  99  2e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  38.93 
 
 
410 aa  99  2e-20  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2496  two component, sigma54 specific, Fis family transcriptional regulator  33.83 
 
 
495 aa  97.8  5e-20  Magnetococcus sp. MC-1  Bacteria  normal  0.0534594  normal  0.148721 
 
 
-
 
NC_008781  Pnap_1956  two component, sigma54 specific, Fis family transcriptional regulator  37.8 
 
 
486 aa  97.1  9e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.696783  normal 
 
 
-
 
NC_010725  Mpop_2960  PAS/PAC sensor hybrid histidine kinase  38.46 
 
 
622 aa  96.3  1e-19  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2842  PAS sensor protein  38.46 
 
 
622 aa  96.3  1e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.174863  normal 
 
 
-
 
NC_009656  PSPA7_2645  response regulator  36.07 
 
 
447 aa  96.3  1e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0366662  n/a   
 
 
-
 
NC_011757  Mchl_3068  PAS/PAC sensor hybrid histidine kinase  38.46 
 
 
622 aa  96.3  1e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.231547  normal 
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  37.5 
 
 
185 aa  95.5  2e-19  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_008639  Cpha266_1833  putative PAS/PAC sensor protein  34.29 
 
 
560 aa  94.7  4e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2364  response regulator receiver protein  32.56 
 
 
806 aa  94.7  4e-19  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011060  Ppha_1021  putative PAS/PAC sensor protein  33.1 
 
 
564 aa  94.4  5e-19  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_3257  response regulator receiver modulated metal dependent phosphohydrolase  36.76 
 
 
358 aa  94  6e-19  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>