| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1982 |
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| Symbol | |
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| ID | 3964338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2130144 |
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| End bp | 2134211 |
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| Gene Length | 4068 bp |
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| Protein Length | 1355 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916802 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_523238 |
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| Protein GI | 89900767 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATGA ATCCCGTCAC CAGGACGCCC GATGATCTGG CGGGTACCTC ACTGATCCGT
GCTGCCGGGC GGCTGGTGCT CGTCTATGCT GTCTTTGCCG GCTTGTGGAT TTGGCTCTCG
GATGAATTGC TGGCGTGGCT GGTCAGCGAT CCGGCCGAAA TCGTCCAGGC CAGCATCTTT
AAAGGCTGGC TGTTTGTGGT CGCCACGTCC CTGTTGCTTT ATGGCTTGCT ACGGCGACTG
CTGAGGCAGA GCCTAGTTGC CTCGATGCGC GAGCAAGAAG CGCAAGCCGA AAATCATCGC
AGCCAGCAGT TGCTGACGGC TCTGATTGAC AGTTCAACGG ACGCCATTTT CGCCAAAGAC
CTGGCCGGAC GCTACTTATT GTTCAACCAC GAAACCACGC GCGTCATGGG CACCACACCT
GAGCGGGCGC TGGGCCATGA TGACACGGCA CTGTTCCCGC CTGAGCAAGC CGAGTTGATC
CGCGCCAACG ATCAGCGCGT ACTCGCGTTG AACCGGACCA CCAGCTACGA GGAGACACTG
GAAACGGTCG ATGGCGAGCG CGTTTTTCTT GCCACCAAGG GGCCCCTGCG CGACAGCAAT
GGACAAGTCA TTGGCCTGTT TGGCATCTCG CGCGACATCA CCGACCGAAA AAGAGACGAA
ACCAGACTCA CCCTGGAAGC GCGCCGCGCC GAGGCGCTGT TGACGCTGCC TGGCGCAGCC
GAAATCATGA CTGAGAGCGC CTTCATGCAG CACGGGCAAG AGTTGGCCGA GCAGCTCACC
GGCAGCCAGA TCGCCTTCAT TCATCTGGTG CACGATGACC AGGAAACGAT TGAACTGGTG
AACTGGTCGC GCAGCACGCT GGCGCAGTAC TGCACCAGCG CTTTTGACAG GCACTACCCC
GTCAGCCAGG CCCGCATCTG GGCCGATGCA CTGCGCCTGC GCACGTCGGT GGTCATCAAT
GACTACGCCA GCGTGATGGG CAAACATGGC CTGCCTGAAG GCCATGCGCA GCTCGACCGC
CTGATCAACG TGCCGGTCAT CGACGGCGGC CTGGTGCGCA TGATGGCCGG CGTCGGCAAC
AAGCCCGAGC CCTACACCGA GGCCGACGTG GAAACAGTGC GCCTGATCGC CGACGCCGTC
TGGCGCATCG TGCGTCAACG CCGGGCCGAG ACAGCGCTGC ACGAAAGCGA ACAGCGGCAT
CGTCTGCTCG CCGACAACGC CAGTGATGTC ATCTGGACCA TGGACCTGAA AGGCCGCTTT
ACCTACGTCA GTCCTTCGGT CGAAAAGCTT CGCGGTTTCA CCAGTGCGGA GGTGATGCAG
CAAACCCTGG CGCAAACTCT GTGCCCCTCA TCGATCCCGG TAGCGACCGA GGCGCTGGGC
AAGTCCATGG CTTCCATGGC GGCCGGTTTG CCCTTCATCG GATTCAGGGG CGAGCTGGAA
CAACCTTGCA AAGACGGATC AACGGTCTGG ACCGAGATTT CCACCAATGG CATGCGCAAT
GAGCAAGGTG ACTTTGTCGG TATCGTCGGC GTCAGCCGCA ACATCACCGA GCGCAAAGCC
CAGCAACAAC AGCTTCAACT CGCGGCGCAG GTGTTTGCAC AGGGGCGCGA AGGTATCACT
GTCACCGATG CTCGGGGCCA CATCATCATG GTCAACCGGG CCTTTAGCGA GATCACCGGC
TATACGCAAG CCGAGGTGCT GGGGCAAAAC CCGCGCATCC TGAAATCCGA GCGACAAAGC
CCGGAGTTTT ACCTCGACAT GTGGACTGCG CTCACCACGT CGGGCCATTG GGCTGGCGAA
ATGTGGAATC GGAAAAAAGA CGGTACGGTG TACCCGGAGT GGATGGCCAT CTCGGCGCTG
CGTGACAGCC AGGGCCTAAC CACGCACTAT GTCGCGAGCT TTAGCGACTT GAGCACCGCC
AAGGCCGCTG AAAGCCGCAT CCAGTGGCTG TCGCAATTCG ACACCCTCAC CGGCCTGCCC
AACCGCACCC TGCTGCAGGA CCGCACGGCG CTGGCCCTCA GCATGGTGCA GCGCGCGCGG
GAGCCGCTGA CCATGCTGCT GGTCGCCATC GATCATTTTG GCGCCGTCAA TGACACCCTG
GGGCATCAGC TTGGCGACGA GCTATTGGTC GAAATGGCCA GACGCCTGAG CGATTCAGTG
CGCGAGCAAG ATACCGTGTC CCGTATGGGT GGCAAAGAAT TTGTGCTGGT CTTGCCTGGC
ACGCCGGCCA TGGGAGCCGC ACACCTGGCC ACTGAACTGC TCTGGAAACT GTCCCGGCCC
TGCTCACTGG GCATGCACGA ACTGACCCTG ACCGCATCGA TCGGCATTGC CAGCTTCCCG
GACAACGGGG CTGACTTTGA CACGCTGTTC AAAGCGGTTG AAATCGCCAT GCATCGTGCG
CAGCTCAAAG GGCGCGACAC CTATCAGTTC TACAGCGACG ACATGTATGA GCAAGTGCTG
GCGCACGACC GCCTGATAAA AGCCTTGCGC CAGGCGATCG TTCTGGATCA ACTGCAACTG
GTGTACCAGC CCCAGGTGGA CTTGCAAACC GGGCAAATCT GCGGTGTCGA GGCGCTGTTG
CGCTGGCAGC ACCCCGAGCT GGGCGCCGTA TCGCCGGGGC AGTTCATTCC CCTGGCCGAG
GAATCGGGCC TCATCATCGG CATCGGTGAG TGGGTGTTGC GACGTGCCTG CCAGGACATT
CGCCGCTGGC TTGATCACGG CATCAAAGTC CCGCATGTGG CGATCAATGC GTCGCCCTTG
CAATTTCGCG ACAACAATTT GGTGCTTCAG GTCAAAGCCG CCCTGACCGA ATCGCAGATT
GACCCGGCGC TGATTTATAT CGAGGTCACC GAGAGTGCAC TGATGGATGA CGTGCCACGC
AACGAAGCCA TGCTCAAGGC GCTAAAAGAC CTGGGCATCA AGCTCTCGCT GGACGACTTC
GGCACCGGTT ACTCGTCGCT GAGCTACCTC AAGCGCTTTC CATTCGACCA GGTCAAGATC
GACCAATCTT TTGTACGGGA CATTGCCACC AGCCAGAGCG ACAGCCTGCT GGTGAAGGTG
ATTGTGTCCA TGGCCCATGG CTTGGGCATG AAGGTCATTG CCGAAGGGGT GGAAACCGAA
GCCCAGTGCG AGATCATGCG CACCAGCATC TGTGACGAAA TTCAGGGCTA TTTCTTTTGC
AAGCCTATCT CAGCCCAGGC GATTGAAGAA CTGTTTTCTG AAGGTCGCCA GTTGCCAGCG
CATCTGCTGC GCCTGCAAAA GCCGCAGCGC ACGCTGCTGC TGGTGGACGA CGAGCCCAAC
ATCCTGGCCT CGCTCAAGCG CCTGTTCAGG CGCGATGGCC ATCTGATCCT GACCGCCAAC
AGTGGCGCTG AGGGGCTGGA GCTGTTGTCC CGGCAAAAGG TCGATCTGAT CATCTCGGAT
CAGCGCATGC CGGGCATGAC CGGGGTGGAG TTCCTGCGCG CCGCCAAAGC CCTGTACCCT
GACACGATTC GCATCGTGCT GTCAGGCTAC ACCGAGTTGC AGTCCGTGAC GGATGCCATC
AATGAAGGCG CCGTCTACCG CTTCTTGACC AAGCCGTGGG AGGATGAGCC ACTGCGCGAG
CACATCAACA AGGCCTTTGA ATACAAGGAG TTGCTGGAGG AAAACCGCCA GCTCGACGTC
AAGATTCGCA CCACCAACCA GGAGTTGATT GCCGCCAATC GGCAACTCGG CGACATCCTG
CAAAACAAGC GCCACCAGAT CGAGCGCGAC GAAACCAGTC TGGCGATTGC GCGTGAAGCC
TTGCAGCACA TGCCGCTGCC CGTGATTGGG GTGGATGACG AAGGCTTGAT TGCGTTTGCA
AATGTGGCTG CCGAACACCG GTTCGCCGAC GCCGGCGCCT TGCTCGGCAT TGAACTGGCT
CGGGCGCTAC CCGCCGTCGA TGCAGCCATC GCCGCTGCCG TTGAAGGGAC GCCCTGCGAG
CTGCTGATTG ACGACACCCG CTACCTGGTC AAGTGGAACC CCATGGGCAT CAACTCGCGC
TCCAGAGGAA AAATAGTCAC CTTGATTCAT ACCGGGCCTG CCGCATGA
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| Protein sequence | MTMNPVTRTP DDLAGTSLIR AAGRLVLVYA VFAGLWIWLS DELLAWLVSD PAEIVQASIF
KGWLFVVATS LLLYGLLRRL LRQSLVASMR EQEAQAENHR SQQLLTALID SSTDAIFAKD
LAGRYLLFNH ETTRVMGTTP ERALGHDDTA LFPPEQAELI RANDQRVLAL NRTTSYEETL
ETVDGERVFL ATKGPLRDSN GQVIGLFGIS RDITDRKRDE TRLTLEARRA EALLTLPGAA
EIMTESAFMQ HGQELAEQLT GSQIAFIHLV HDDQETIELV NWSRSTLAQY CTSAFDRHYP
VSQARIWADA LRLRTSVVIN DYASVMGKHG LPEGHAQLDR LINVPVIDGG LVRMMAGVGN
KPEPYTEADV ETVRLIADAV WRIVRQRRAE TALHESEQRH RLLADNASDV IWTMDLKGRF
TYVSPSVEKL RGFTSAEVMQ QTLAQTLCPS SIPVATEALG KSMASMAAGL PFIGFRGELE
QPCKDGSTVW TEISTNGMRN EQGDFVGIVG VSRNITERKA QQQQLQLAAQ VFAQGREGIT
VTDARGHIIM VNRAFSEITG YTQAEVLGQN PRILKSERQS PEFYLDMWTA LTTSGHWAGE
MWNRKKDGTV YPEWMAISAL RDSQGLTTHY VASFSDLSTA KAAESRIQWL SQFDTLTGLP
NRTLLQDRTA LALSMVQRAR EPLTMLLVAI DHFGAVNDTL GHQLGDELLV EMARRLSDSV
REQDTVSRMG GKEFVLVLPG TPAMGAAHLA TELLWKLSRP CSLGMHELTL TASIGIASFP
DNGADFDTLF KAVEIAMHRA QLKGRDTYQF YSDDMYEQVL AHDRLIKALR QAIVLDQLQL
VYQPQVDLQT GQICGVEALL RWQHPELGAV SPGQFIPLAE ESGLIIGIGE WVLRRACQDI
RRWLDHGIKV PHVAINASPL QFRDNNLVLQ VKAALTESQI DPALIYIEVT ESALMDDVPR
NEAMLKALKD LGIKLSLDDF GTGYSSLSYL KRFPFDQVKI DQSFVRDIAT SQSDSLLVKV
IVSMAHGLGM KVIAEGVETE AQCEIMRTSI CDEIQGYFFC KPISAQAIEE LFSEGRQLPA
HLLRLQKPQR TLLLVDDEPN ILASLKRLFR RDGHLILTAN SGAEGLELLS RQKVDLIISD
QRMPGMTGVE FLRAAKALYP DTIRIVLSGY TELQSVTDAI NEGAVYRFLT KPWEDEPLRE
HINKAFEYKE LLEENRQLDV KIRTTNQELI AANRQLGDIL QNKRHQIERD ETSLAIAREA
LQHMPLPVIG VDDEGLIAFA NVAAEHRFAD AGALLGIELA RALPAVDAAI AAAVEGTPCE
LLIDDTRYLV KWNPMGINSR SRGKIVTLIH TGPAA
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