More than 300 homologs were found in PanDaTox collection
for query gene PP_2942 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_002947  PP_2942  response regulator  100 
 
 		 456 aa  933    Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  77.32 
 
 		 451 aa  704    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal  1 
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  98.03 
 
 		 456 aa  914    Pseudomonas putida F1  Bacteria  normal  0.862781  normal  1 
 
 
-
 
NC_009656  PSPA7_2645  response regulator  71.07 
 
 		 447 aa  592  1e-168  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0366662  n/a   
 
 
-
 
NC_008463  PA14_30830  putative two-component response regulator  69.93 
 
 		 447 aa  583  1.0000000000000001e-165  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0592396  hitchhiker  0.000000000000489784 
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  39.37 
 
 		 449 aa  315  9.999999999999999e-85  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  39.86 
 
 		 438 aa  312  1e-83  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007651  BTH_I0615  response regulator  36.21 
 
 		 484 aa  280  3e-74  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  36.74 
 
 		 481 aa  279  6e-74  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  36.74 
 
 		 481 aa  279  6e-74  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_2469  response regulator  36.74 
 
 		 481 aa  279  6e-74  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  36.74 
 
 		 481 aa  279  6e-74  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  36.74 
 
 		 481 aa  279  6e-74  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_0745  response regulator/HD domain-containing protein  36.74 
 
 		 481 aa  279  9e-74  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_006348  BMA0261  response regulator  36.68 
 
 		 439 aa  276  7e-73  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  37.53 
 
 		 473 aa  269  7e-71  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_007435  BURPS1710b_A0711  response regulator  36.41 
 
 		 518 aa  268  2e-70  Burkholderia pseudomallei 1710b  Bacteria  normal  0.226782  n/a   
 
 
-
 
NC_007650  BTH_II0731  response regulator  36.72 
 
 		 476 aa  268  2e-70  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2231  response regulator  36.41 
 
 		 475 aa  268  2e-70  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA1662  response regulator  36.41 
 
 		 475 aa  267  4e-70  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1923  response regulator  36.41 
 
 		 475 aa  267  4e-70  Burkholderia mallei NCTC 10229  Bacteria  normal  0.537818  n/a   
 
 
-
 
NC_008784  BMASAVP1_1716  response regulator  36.41 
 
 		 475 aa  267  4e-70  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010512  Bcenmc03_6441  response regulator receiver modulated metal dependent phosphohydrolase  37.3 
 
 		 470 aa  267  4e-70  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A2450  putative two-component response regulator  39.34 
 
 		 431 aa  266  5e-70  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008062  Bcen_5575  response regulator receiver modulated metal dependent phosphohydrolase  37.06 
 
 		 472 aa  266  5e-70  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008544  Bcen2424_5939  response regulator receiver modulated metal dependent phosphohydrolase  37.06 
 
 		 472 aa  266  5e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  0.862183 
 
 
-
 
NC_009079  BMA10247_A0599  response regulator  36.41 
 
 		 475 aa  266  5.999999999999999e-70  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A2314  response regulator  36.18 
 
 		 475 aa  266  5.999999999999999e-70  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_010557  BamMC406_5980  response regulator receiver modulated metal dependent phosphohydrolase  37.41 
 
 		 469 aa  264  2e-69  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008392  Bamb_6276  response regulator receiver modulated metal dependent phosphohydrolase  37.18 
 
 		 469 aa  263  4e-69  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  32.39 
 
 		 452 aa  218  2e-55  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_3805  response regulator receiver domain-containing protein  31.96 
 
 		 439 aa  217  4e-55  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  32.26 
 
 		 479 aa  209  1e-52  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008609  Ppro_2722  response regulator receiver modulated metal dependent phosphohydrolase  33.26 
 
 		 444 aa  206  8e-52  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2541  response regulator  31.31 
 
 		 441 aa  201  1.9999999999999998e-50  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_03496  response regulator  31.29 
 
 		 434 aa  200  3e-50  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A0606  response regulator  30.34 
 
 		 447 aa  199  7.999999999999999e-50  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_2367  response regulator receiver modulated metal dependent phosphohydrolase  32.84 
 
 		 538 aa  196  9e-49  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  30.37 
 
 		 439 aa  189  1e-46  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_3241  response regulator  26.98 
 
 		 428 aa  184  2.0000000000000003e-45  Colwellia psychrerythraea 34H  Bacteria  normal  0.0406645  n/a   
 
 
-
 
NC_010571  Oter_0430  response regulator receiver protein  31.5 
 
 		 423 aa  181  2e-44  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  1 
 
 
-
 
NC_010002  Daci_3636  response regulator receiver modulated metal dependent phosphohydrolase  28.57 
 
 		 435 aa  174  3.9999999999999995e-42  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00176884  normal  0.167373 
 
 
-
 
NC_009943  Dole_3257  response regulator receiver modulated metal dependent phosphohydrolase  32.51 
 
 		 358 aa  153  5.9999999999999996e-36  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1196  response regulator receiver modulated metal dependent phosphohydrolase  31.07 
 
 		 375 aa  149  1.0000000000000001e-34  Anaeromyxobacter sp. K  Bacteria  normal  0.318732  n/a   
 
 
-
 
NC_011891  A2cp1_1265  response regulator receiver modulated metal dependent phosphohydrolase  31.07 
 
 		 375 aa  148  2.0000000000000003e-34  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.297476  n/a   
 
 
-
 
NC_009675  Anae109_1184  response regulator receiver modulated metal dependent phosphohydrolase  29.46 
 
 		 394 aa  148  2.0000000000000003e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.185308 
 
 
-
 
NC_007760  Adeh_1136  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  30.03 
 
 		 391 aa  144  4e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.942852  n/a   
 
 
-
 
NC_009675  Anae109_1991  response regulator receiver modulated metal dependent phosphohydrolase  28.92 
 
 		 357 aa  142  9.999999999999999e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  42.68 
 
 		 270 aa  138  2e-31  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_007760  Adeh_1829  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  28.21 
 
 		 357 aa  136  8e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  46.62 
 
 		 185 aa  134  3e-30  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_011891  A2cp1_2101  response regulator receiver modulated metal dependent phosphohydrolase  27.93 
 
 		 357 aa  134  3e-30  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_2031  response regulator receiver modulated metal dependent phosphohydrolase  27.93 
 
 		 357 aa  134  3e-30  Anaeromyxobacter sp. K  Bacteria  normal  0.306573  n/a   
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  44.37 
 
 		 823 aa  132  2.0000000000000002e-29  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_2498  response regulator receiver modulated metal dependent phosphohydrolase  27.47 
 
 		 367 aa  131  2.0000000000000002e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.751736 
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  44.44 
 
 		 187 aa  130  3e-29  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007517  Gmet_3477  PAS/PAC sensor hybrid histidine kinase  42.68 
 
 		 1465 aa  130  7.000000000000001e-29  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010814  Glov_1570  response regulator receiver protein  47.3 
 
 		 210 aa  127  4.0000000000000003e-28  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU2094  response regulator  26.99 
 
 		 329 aa  126  9e-28  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  41.61 
 
 		 491 aa  125  1e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_008346  Swol_2547  response regulator receiver protein  27.03 
 
 		 395 aa  125  1e-27  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  41.61 
 
 		 491 aa  125  2e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_3800  response regulator receiver domain-containing protein  43.88 
 
 		 488 aa  124  3e-27  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  40.99 
 
 		 189 aa  123  5e-27  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  42.77 
 
 		 285 aa  123  5e-27  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0966  type II secretion system protein E  46.34 
 
 		 746 aa  123  6e-27  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.783688 
 
 
-
 
NC_011146  Gbem_2407  response regulator receiver modulated metal dependent phosphohydrolase  27.62 
 
 		 347 aa  123  7e-27  Geobacter bemidjiensis Bem  Bacteria  normal  0.21688  n/a   
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  40 
 
 		 492 aa  123  8e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.224656 
 
 
-
 
NC_008609  Ppro_2721  response regulator receiver protein  45.39 
 
 		 188 aa  122  1.9999999999999998e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_3046  response regulator receiver modulated metal dependent phosphohydrolase  26.4 
 
 		 365 aa  121  1.9999999999999998e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0429754  n/a   
 
 
-
 
NC_002936  DET0624  response regulator  26.76 
 
 		 334 aa  122  1.9999999999999998e-26  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_3472  response regulator receiver sensor signal transduction histidine kinase  40.35 
 
 		 520 aa  122  1.9999999999999998e-26  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  38.01 
 
 		 965 aa  122  1.9999999999999998e-26  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal  1 
 
 
-
 
NC_012918  GM21_2364  response regulator receiver protein  40.29 
 
 		 806 aa  119  9.999999999999999e-26  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  42.42 
 
 		 994 aa  119  9.999999999999999e-26  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal  1 
 
 
-
 
NC_011146  Gbem_0885  response regulator receiver modulated metal dependent phosphohydrolase  24.93 
 
 		 324 aa  119  9.999999999999999e-26  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_1811  response regulator receiver modulated metal dependent phosphohydrolase  27.07 
 
 		 347 aa  119  1.9999999999999998e-25  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00843757 
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  27.3 
 
 		 343 aa  117  5e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_007908  Rfer_1982  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.68 
 
 		 1355 aa  116  7.999999999999999e-25  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_2374  response regulator receiver modulated metal dependent phosphohydrolase  25.84 
 
 		 348 aa  115  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_565  response regulator receiver:metal-dependent phosphohydrolase, HD subdomain protein  25.35 
 
 		 334 aa  115  2.0000000000000002e-24  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_4270  response regulator receiver modulated metal dependent phosphohydrolase  25.07 
 
 		 361 aa  115  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_1919  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  25.07 
 
 		 350 aa  115  2.0000000000000002e-24  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  0.179225 
 
 
-
 
NC_012918  GM21_3375  response regulator receiver modulated metal dependent phosphohydrolase  24.45 
 
 		 324 aa  115  2.0000000000000002e-24  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_002939  GSU1654  response regulator, putative  24.72 
 
 		 349 aa  114  3e-24  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU1891  response regulator  25.82 
 
 		 379 aa  114  4.0000000000000004e-24  Geobacter sulfurreducens PCA  Bacteria  normal  0.750204  n/a   
 
 
-
 
NC_008609  Ppro_1378  response regulator receiver modulated metal dependent phosphohydrolase  27.83 
 
 		 348 aa  114  5e-24  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00581699  n/a   
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  39.13 
 
 		 496 aa  113  6e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal  1 
 
 
-
 
NC_010814  Glov_1568  response regulator receiver protein  42.11 
 
 		 262 aa  113  7.000000000000001e-24  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_1538  response regulator receiver modulated diguanylate phosphodiesterase  40.15 
 
 		 563 aa  113  8.000000000000001e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  30.67 
 
 		 377 aa  113  8.000000000000001e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  29.03 
 
 		 377 aa  112  1.0000000000000001e-23  Acidovorax sp. JS42  Bacteria  normal  1  normal  0.0516082 
 
 
-
 
NC_011901  Tgr7_0081  two component transcriptional regulator, AraC family  28.38 
 
 		 399 aa  112  2.0000000000000002e-23  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  28.76 
 
 		 377 aa  111  2.0000000000000002e-23  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  40.85 
 
 		 493 aa  112  2.0000000000000002e-23  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012880  Dd703_2727  response regulator receiver protein  27.64 
 
 		 380 aa  112  2.0000000000000002e-23  Dickeya dadantii Ech703  Bacteria  normal  0.700678  n/a   
 
 
-
 
NC_012918  GM21_0653  response regulator receiver modulated metal dependent phosphohydrolase  24.72 
 
 		 345 aa  111  3e-23  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.6785900000000002e-24 
 
 
-
 
NC_010524  Lcho_1463  response regulator receiver modulated metal dependent phosphohydrolase  31.47 
 
 		 364 aa  111  3e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.404054 
 
 
-
 
NC_011146  Gbem_0639  response regulator receiver modulated metal dependent phosphohydrolase  25 
 
 		 345 aa  111  3e-23  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0597  response regulator receiver modulated metal dependent phosphohydrolase  25.35 
 
 		 334 aa  111  3e-23  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
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