| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1538 |
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| Symbol | |
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| ID | 4172987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1845413 |
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| End bp | 1847104 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054547 |
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| Product | response regulator receiver modulated diguanylate phosphodiesterase |
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| Protein accession | YP_661114 |
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| Protein GI | 109897859 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGCC AGCAATTACA TGCCACTCCG GCGACAGGTA AGCTTTTAGT TGTGGACGAT
GAACCGAATA TTTTATCGTC ATTAAAACGC TGTTTAGTGA AAACACCATT TGAAGTCTTT
ATGGCCAATA GTGCCCAAGA GGGGCTTGCC ATAATGCAAG AGCACAACAT TCAAGTGGTG
CTGTCGGATT TTCGTATGCC ACAGATGTCA GGTGCTGAGT TTCTCGAGCA AATTAAGCAA
CATCACCCTG ATGTGATATC CATGGTACTG AGTGGTTTTG CAGATTTTGA TTCAGCCATC
GGTTTATTAA ACAGCGGTGC GGCGCATAAA TTTTTGCGTA AGCCTTGGAA TAATCAACAG
TTAATAGAAG AAGTCGACGG CGCGTTTGTT GAATATCACG CCAGAATAAT GAATCGGCGC
GTATTAGAAG GCGAGCACAA TCCTGAGTAT TACGCATTTG AGCAAGCGGT GCGCGACCAG
TTTGAGATGC AACAAGAGTT TTGCCTCGTT TCGCTTAAAA TTAAGGACTA CGACTACTTA
GAACAGCATG CTGGGCCGGG TATTTTCACT GGACTGTTAA CTGAAATTAG AGGATTAGTC
AGTAGCGAAC TGCCACAAGG CAGTAAAACG TTTGCCTTTG ACAGCGGCAA AATTTTCATC
ATCATTCCTG ATTTTGAAAG TGAAGAGGTG ATCCGTCGTC GCTTATCAGC CATTAACCAC
AAATTAAACG AGCCCAATAC ACAGCGCAAA GGCTGCGTTA AAATAAACTG TGTGATGGGG
TATGCATTGG CTCCCACTGA TGGCGAAGAC CCAAGTAGTT TGATGGAAAA CTTACGTTGT
GCGTTTTCAG TCGATAATTC AGACAGAGAA AGGTTGTGCC GTTTTGATTC AGCCTTGCGT
GACTTGCAGC AACGCCAGCT TAAGATTAAA AACTCCATTA ATGGTGCGCT ACGTGATAAT
CAATTCTTCT TGCATTTTCA GCCGAAAGTG CACTTACCCG ATCAGCAAAT TGATAGCGCG
GAGATCCTTA TCCGTTGGCA ACACAATGAA TTAGGGTGGA TCCCGCCCAA TGAGTTTATC
AATTTGAGCG AACTAGATGG TCAAATTGAG CAAATCGGCG AATGGCTGAT AGATCAAAGC
GTAAAGAAAA TTGCTGAGCT TCACCATTTC ACTCCTGACT TAAAGCGTGT CGCGATAAAC
ATTTCCTCAA GACAGCTAGC TAATCACAGC GTAGTGGAGC AATTCGAACA CCTGTTGGAT
AAATACGCAT TGCCGCCGTC ACTCATTGAG CTGGAAATTA CTGAGTCTTG CCTGATCCAA
GATTTTGAGC AAACGTTGGC GATCTTATGG GAGCTTAAAG AGCTTGGGGT GAGCATCGCT
ATGGATGATT TTGGCACTGG GTACTCGTCT TTCGCTTATC TGGCAAAATT ACCTATTGAT
GTGCTGAAAC TAGATAAAGT GCTGGTGGAC GGCATTGAAG GCTGCAAGGA AATTCAGAGC
ATGATTGGTG GATTGATTGC TATGTGTCAT GAATTAGGCA TTGATGTGGT TGCTGAAGGG
GTTGAACTAG AAGGGCAGGT TGCGCTATTG AAGCAACTCA ACTGCGACTA CATTCAAGGG
TATTATTTTA GTAAAGCACT GCCTAAGCCT GAGTTTGAAA AACTGTTATT ACAACAGCCG
TTTATGCACT AA
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| Protein sequence | MNSQQLHATP ATGKLLVVDD EPNILSSLKR CLVKTPFEVF MANSAQEGLA IMQEHNIQVV
LSDFRMPQMS GAEFLEQIKQ HHPDVISMVL SGFADFDSAI GLLNSGAAHK FLRKPWNNQQ
LIEEVDGAFV EYHARIMNRR VLEGEHNPEY YAFEQAVRDQ FEMQQEFCLV SLKIKDYDYL
EQHAGPGIFT GLLTEIRGLV SSELPQGSKT FAFDSGKIFI IIPDFESEEV IRRRLSAINH
KLNEPNTQRK GCVKINCVMG YALAPTDGED PSSLMENLRC AFSVDNSDRE RLCRFDSALR
DLQQRQLKIK NSINGALRDN QFFLHFQPKV HLPDQQIDSA EILIRWQHNE LGWIPPNEFI
NLSELDGQIE QIGEWLIDQS VKKIAELHHF TPDLKRVAIN ISSRQLANHS VVEQFEHLLD
KYALPPSLIE LEITESCLIQ DFEQTLAILW ELKELGVSIA MDDFGTGYSS FAYLAKLPID
VLKLDKVLVD GIEGCKEIQS MIGGLIAMCH ELGIDVVAEG VELEGQVALL KQLNCDYIQG
YYFSKALPKP EFEKLLLQQP FMH
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