| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1751 |
|---|
| Symbol | |
|---|
| ID | 6331988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 1812178 |
|---|
| End bp | 1814193 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 25% |
|---|
| IMG OID | 642658026 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001931902 |
|---|
| Protein GI | 188997651 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGCGG TTGTTGCTAT AACCATAGTT TACTATTTAA TCTCTTTTCT TACAAATACA
ATTAAGCGAA AAGATATTTT TATTATATTA GCTATTTTAA TATATATTAT AGATTATTTA
CTCAAATATA AAGGAATAAA TTTTGATATT TTATCTTTAT TCTTTTTATC TTTAATACTT
CATGCAAAAT TTAAAAAAGA GAATATTAAA ATACTATCCA TTGTCACAGC TTACTATATT
AGTTTAACAC TGATTATTAA TTTTTTCCAG GATTTCAAAT TTATAAAAGC TTTTTATTTT
TTAGGATTGG TAATTTTAAA TCAAAAATCT GAAATCATTG AAAAAATTTG GTTGAGTGCT
ATCTCTGTAT CTTTTATTTT AAGTTTAATA AATTCAAATT TTGTTAGCTA TGGTATTGCA
TTAATTTTAT TATTTTTTGT ATATTTAAAA ATTTTGGAAT ATAAAGAAAA TTTGGAAGAA
AATCAAGAGG AATTTAAGAA GAAAATTGCA AGAACAATAG AGATAGAAGT AAAAAGAGAA
TATGAAAAAC TTGAGCTTAA ATTACAATTA GCCTATAAAA AACTAAAAGA ATTATTTAAA
CTTAATACTT TCATAATAAA AGAGATTTCT TTAAATGAAA TGGCTCAAAA AATTATAGAA
GGTTTAATAG ATTTAGGATA TGCTGGTGCA TACATTTATA TTTCAAATGA AAATTTATTT
AAGAAAGAAG GCTTTATTCC AAATTTAAGG ATCATCACAG AAGAAATGAA AGATAAAACT
ATAGTATCGA CCTTTGAAGA CGAAAAATTA ATTTATATAC CTCTAAAAGA TGAAAAAGAT
CTTTTAGGTT ATCTGGTAGT TTATTCTAAA ACTTCATTAA CGCCAGAAGA GATTGAATAT
TTGATTACAT ATGCTAATTC TATCTCAAAT ATTATTGCAA AAACAAATTA CTTTTTGGAA
ATAGTTAAAT TAAGGGATTT AATTTATAGA ACTATAGAAG CTGTGAATAT AGGTATTGTA
GTTTTAGATA GAGATTTTAA TATAGAAATT TTAAATAATT TTGCAAGAAA GTTTACAAGC
TATGAAACTA CGATTAACCA AAATTTATTT GAAGTTTTCC CATTTTTTGA CTCAATAAAA
GTATACTTAG AAGATGTCCT TTATACAAAA AAAGAATTTG AAATAAAAAT TAAAGATCAA
GCATTAAGCA GAATTTTCGA GGTAAAAGCT TTTCCAATCT CTTCTGAAGA AGTATTAAAT
GGTTTGGTTA TAGTCTTTGA AGATGTTACA GAAAAAGAAG AAATGGAGAA TCAAATTATC
CAGTCAGAAA AACTTGCAGT TATTGGTAGA TTGGCTGCTG GTATTTCACA TGAGATAAAA
AATCCATTAG CAATTATAAA TCAAAATGCC TTTATGGTAA AAAGAAGAAT TCAAAAATTA
TGTTCGAATG TTGACAATAT TGATAATATT TTAGAATCGA TTGAAAGGAT TGAAAGAAAT
GTAATTAGAG CAACGGATAT AATAGAAAGA TTATTAAATT TTTCTAAACC ATACTATACA
AAGGCTGAAA AAGTAAATCT TAGAGAAGTT GTTGAGGAAG CAATAAAATT AGCGATACTC
CAAGCGCAGA AAAGTAATAT TTCGTTTTCA AAGAAATTAG TGGATGCTTA TGTAAAAGGT
GATAAGAATG CATTAATACA GCTATTTATT AATTTAATTT TAAATGCAAT AGAGGCTATA
GAAAATAAAG GTAAAATAAC GATAAAGATT ACGCCTCTTA AAAGAACTGA GAATGTAAGA
GTTGTGATTA AAGATACTGG CAAAGGAATA TCGGAAGATA TTTTAGATAA GATTTTTGAA
CCATTTTTTA CGACCAAAGA AAAGGGGACA GGACTTGGTC TTGCTGTGAG CTATAGAATT
CTTCAGGATC ATGGTGGTAA AATATTAGTC AATAGCAAAG AAGGCGAGGG GACTGAATTT
ATTCTAACAT TCCCATTATT TAACGAGGAA AATTAA
|
|---|
| Protein sequence | MEAVVAITIV YYLISFLTNT IKRKDIFIIL AILIYIIDYL LKYKGINFDI LSLFFLSLIL
HAKFKKENIK ILSIVTAYYI SLTLIINFFQ DFKFIKAFYF LGLVILNQKS EIIEKIWLSA
ISVSFILSLI NSNFVSYGIA LILLFFVYLK ILEYKENLEE NQEEFKKKIA RTIEIEVKRE
YEKLELKLQL AYKKLKELFK LNTFIIKEIS LNEMAQKIIE GLIDLGYAGA YIYISNENLF
KKEGFIPNLR IITEEMKDKT IVSTFEDEKL IYIPLKDEKD LLGYLVVYSK TSLTPEEIEY
LITYANSISN IIAKTNYFLE IVKLRDLIYR TIEAVNIGIV VLDRDFNIEI LNNFARKFTS
YETTINQNLF EVFPFFDSIK VYLEDVLYTK KEFEIKIKDQ ALSRIFEVKA FPISSEEVLN
GLVIVFEDVT EKEEMENQII QSEKLAVIGR LAAGISHEIK NPLAIINQNA FMVKRRIQKL
CSNVDNIDNI LESIERIERN VIRATDIIER LLNFSKPYYT KAEKVNLREV VEEAIKLAIL
QAQKSNISFS KKLVDAYVKG DKNALIQLFI NLILNAIEAI ENKGKITIKI TPLKRTENVR
VVIKDTGKGI SEDILDKIFE PFFTTKEKGT GLGLAVSYRI LQDHGGKILV NSKEGEGTEF
ILTFPLFNEE N
|
|---|
| |