| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0886 |
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| Symbol | |
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| ID | 5538352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1159159 |
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| End bp | 1161687 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640893037 |
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| Product | GAF sensor hybrid histidine kinase |
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| Protein accession | YP_001431020 |
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| Protein GI | 156740891 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00435524 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTGTGCT CACCGTCATA TGATCAACCG GATGGAACGG ACCTTCTCTA TGATGTGATT
GACCATATTC CTGCGGGAAT TCTGGTCGTT TCGCTTCCTG AGTTTCGCAT TCTTGCCATC
AATGCGCGCG CTTGCGTGCG GTTTGGCATT CCGATCACCG CACACATTAC CGGTCGCCTC
TGCTCCGAAG TGATCCCCCG GTTTGCCGAA GATCGTCTCG ATGAACTGTG GCTCTCGACT
GCCGGTATTC AAACCGGCAA CGCCACGCCG CCGACCGAGG TGGGCGGCGC GCTAACTCGC
CGCTGGAATG CCTATGCAGT GTGCGATCCG TCCGGTCGAG CCGTGCGCCT GCTGCTCGTC
TGGTTCGAGG CGAGCGTAAC GCCCGAGCAT CAGTTCGCCA GCAGCGCGCA GCAGATTACC
CGCGCGCTGA TTTCGATTCT TGACCGCGAT CAACTGCTCG ATCTCATCCT GGAACAACTC
CATGGCGTGG TTGTTTACGA TAGGGCCATG GTCGTCTTAC GCGACGAGGA TGGATATTAC
ATTGCGGCCA GTCGGGGATT GCCCGCGTAC AACGGTCGTG CCACGAAACG GGTCCCTGCA
ACGAATCGCG TGCTCAATCA GGTTGAGGCG GCCTATGAAC CGGTGATCGT GCGGGGCGAA
CTAGAGGTGG AGGATCTGTG CGGCGCACAG AGCAATGCGC ATATCTGGCT GGGAGTGCCG
CTTCGGGCGC AGGGTGATGT TGTGGGCATT TTGCTGCTGA CAAACCGGTC TTCCAATCAC
TACACCCGCG CCGATGCTGC ACAGGCGCAG GCGTTTGCCG CCTATGCGGC ATTGGTGGTG
CGCAATGCAG AACTCTACTA TCGCGCCCGT GAACAGAGCG CGCGCCTGGC GCTCGTCAAC
CGCATTGCGC GCATGATCAC GGCAACCCAC GATCTGCACG CAATCTTTGC TCATTTGATT
GAACATCTGC ACGGTGTTGT TCCGCTCGAT ATCGCCGAAC TTGCGTTGTT CGACCCGGCA
ACCCGGCGTC TGACGATGAT CGCCCGGCAT CCACCGGTAA GCGCCGCTGA TGCGACCAAT
GTCGATTATA GCAGTGAGGA CGCACTGTTC CTTCAGCGGT TGATCGACCA GCGCCAACCG
CGCCTCCTGT CGCCGGACGA TGTCGCTGCG CCGGAGATTC AGCAACGTCT CATTTGCGCG
GGAATCCGGT CATGCCTGGT TGTCCCGATT GTCGATGAGG GGTATACGTC CGGCGCACTG
CTTCTGGGGA GCCATCGAAC GCATGCGTTT CCTGCCATCG AAATTCGCAT GCTCGCCGAT
CTTGCGCAGC ATCTCGCCGT CGCCATTCAA AACGCCCAAT TGCATCAGGC GCGCGAGAAG
GCGCTGGCGG ATCTACGCCT TGCGCAACAG CGGCTCATTC AGTCCGAACG GTTGACGGCG
GTTGGGGAAC TGGTGGCAGG CGTTGCGCAT GAATTGAACA ATCCATTGAC TGCTGTGCTT
GGATTTGCCA ACATTCTGCA ACAAACCGCG CCGACCGAGT ATCAGCACGA TCTGGCGATG
ATTGTCGAAA GCGCCACTCG CGCACGGCGG ATTGTCCAGA ATCTCCTGAC CTTCGCGCGC
CAGCGCCAGG TGCATCGGGA AGAGGTCGAT CTGAATCTTG CTGTGCGTCA GGTGTTGAGT
CTGCTTGCCT ATCATATGCG CACCCATCAT ATTGTTGTTG AAGAACGCCT CAAGCCGAAT
CTGCCGCTGA CAACCGCCGA TGCCACGGCG ATTAAGCAGG TGGTGCTCAA TTTACTGAAC
AATGCGCAAC AGGCGCTGGC ATCGTGGCAT GGCGAGCGAC GCATTCTGAT TTCAACCGAT
AGCGAATGGC GTGATGGTCA GGAATGGCTG ATCCTTCGGA TCAGTGATAC CGGTCCTGGT
ATTGCGCCTG AACATCTGCC ACTGATCTTC GAGCCATTTT TTACGACGAA ACCAGTCGGC
GAAGGCACCG GCTTGGGGTT GTCGATCTGC TACGGCATCG TGACGCAGTA CCATGGTCAT
ATCCATGTCC ACAGTGTTGT AGGGAGCGGC GCCAGTTTTA CCGTGGAACT GCCGGTTCAG
GTATGTTTGG AAAGCGATGC TGCCGGTTCG GCGCCAACCG CAGTTCAACC TGAGCGCCAG
TATCATGTGC TCGTCGTTGA TGATGAGGCG GCCATTGCGG AATTGATCGC CCGGCTTTTG
CGGGAACGGG GATATACCGT TGATATATGT CGCGATGGGG CAACCGCGCT GGACCGGATC
AACCGCACGG CATACGATCT GCTTATCTGT GATGTGCGCA TGCCGGGGAT GAGCGGCGAT
GAGTTGTTTG CCAATCTGAG TCAGCGCGCG CCGCACCTGA CGCGCCGCGT GCTGTTCGTC
AGCGGCGACA CCGCTAGTTA CAGCACACGC GAGTTCCTCG AACGCAGCGG TGTCCGCTAT
GTTGAGAAGC CATTTGATGC CGCCGAATTT GTCAACATTG TGCGTCAGGT GCTTGCTGAA
CCGTCGTGA
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| Protein sequence | MVCSPSYDQP DGTDLLYDVI DHIPAGILVV SLPEFRILAI NARACVRFGI PITAHITGRL
CSEVIPRFAE DRLDELWLST AGIQTGNATP PTEVGGALTR RWNAYAVCDP SGRAVRLLLV
WFEASVTPEH QFASSAQQIT RALISILDRD QLLDLILEQL HGVVVYDRAM VVLRDEDGYY
IAASRGLPAY NGRATKRVPA TNRVLNQVEA AYEPVIVRGE LEVEDLCGAQ SNAHIWLGVP
LRAQGDVVGI LLLTNRSSNH YTRADAAQAQ AFAAYAALVV RNAELYYRAR EQSARLALVN
RIARMITATH DLHAIFAHLI EHLHGVVPLD IAELALFDPA TRRLTMIARH PPVSAADATN
VDYSSEDALF LQRLIDQRQP RLLSPDDVAA PEIQQRLICA GIRSCLVVPI VDEGYTSGAL
LLGSHRTHAF PAIEIRMLAD LAQHLAVAIQ NAQLHQAREK ALADLRLAQQ RLIQSERLTA
VGELVAGVAH ELNNPLTAVL GFANILQQTA PTEYQHDLAM IVESATRARR IVQNLLTFAR
QRQVHREEVD LNLAVRQVLS LLAYHMRTHH IVVEERLKPN LPLTTADATA IKQVVLNLLN
NAQQALASWH GERRILISTD SEWRDGQEWL ILRISDTGPG IAPEHLPLIF EPFFTTKPVG
EGTGLGLSIC YGIVTQYHGH IHVHSVVGSG ASFTVELPVQ VCLESDAAGS APTAVQPERQ
YHVLVVDDEA AIAELIARLL RERGYTVDIC RDGATALDRI NRTAYDLLIC DVRMPGMSGD
ELFANLSQRA PHLTRRVLFV SGDTASYSTR EFLERSGVRY VEKPFDAAEF VNIVRQVLAE
PS
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