More than 300 homologs were found in PanDaTox collection
for query gene RPB_3967 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_3967  response regulator receiver domain-containing protein  100 
 
 
253 aa  509  1e-143  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.365316 
 
 
-
 
NC_011004  Rpal_1744  response regulator receiver protein  62.26 
 
 
229 aa  249  4e-65  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4105  response regulator receiver domain-containing protein  36.22 
 
 
229 aa  116  3.9999999999999997e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0374743 
 
 
-
 
NC_012560  Avin_29300  Response regulator  40.16 
 
 
310 aa  82.4  0.000000000000006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1161  response regulator receiver protein  40.68 
 
 
126 aa  81.6  0.00000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.606485 
 
 
-
 
NC_009439  Pmen_4314  response regulator receiver protein  35.9 
 
 
128 aa  78.2  0.0000000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.7882  normal  0.646224 
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  40.16 
 
 
242 aa  77.4  0.0000000000002  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_008816  A9601_01871  two-component response regulator  40.16 
 
 
242 aa  77.4  0.0000000000002  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.528311  n/a   
 
 
-
 
NC_007577  PMT9312_0171  two component LuxR family transcriptional regulator  40.16 
 
 
242 aa  77.8  0.0000000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1086  multi-sensor hybrid histidine kinase  38.71 
 
 
1431 aa  76.6  0.0000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1944  histidine kinase  30.73 
 
 
1278 aa  75.5  0.0000000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.866742 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  36.36 
 
 
314 aa  75.5  0.0000000000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008817  P9515_01981  two-component response regulator  36.89 
 
 
242 aa  75.1  0.0000000000009  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.125891  n/a   
 
 
-
 
NC_007298  Daro_1771  PAS:GGDEF  36 
 
 
449 aa  74.7  0.000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3818  PAS/PAC sensor hybrid histidine kinase  35.88 
 
 
1426 aa  74.7  0.000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3040  histidine kinase  29 
 
 
1053 aa  73.9  0.000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0526469  normal  0.364658 
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  34.19 
 
 
239 aa  73.9  0.000000000002  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  34.19 
 
 
239 aa  73.9  0.000000000002  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  29.83 
 
 
383 aa  73.6  0.000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_013037  Dfer_0536  histidine kinase  33.83 
 
 
1324 aa  73.2  0.000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0692259  normal  0.421547 
 
 
-
 
NC_007604  Synpcc7942_0095  two component transcriptional regulator  35.48 
 
 
249 aa  73.2  0.000000000004  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  33.69 
 
 
353 aa  73.2  0.000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  38.66 
 
 
395 aa  72.8  0.000000000005  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0381  sensory box histidine kinase/response regulator  24.79 
 
 
497 aa  72.4  0.000000000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  36.51 
 
 
245 aa  72.4  0.000000000007  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  33.59 
 
 
715 aa  72.4  0.000000000007  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  35.09 
 
 
354 aa  72  0.000000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  37.5 
 
 
359 aa  72  0.000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3993  response regulator receiver protein  34.45 
 
 
124 aa  72  0.000000000009  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0199898 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  33.59 
 
 
349 aa  72  0.00000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  34.59 
 
 
374 aa  71.6  0.00000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_0840  response regulator receiver protein  34.75 
 
 
132 aa  71.2  0.00000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  34.59 
 
 
374 aa  71.6  0.00000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0155  multi-sensor signal transduction histidine kinase  35.54 
 
 
1153 aa  71.2  0.00000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.359014  hitchhiker  0.0000017622 
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  38.46 
 
 
245 aa  71.2  0.00000000001  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1666  ATP-binding region, ATPase-like  34.13 
 
 
1427 aa  71.2  0.00000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.207779 
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  29.94 
 
 
319 aa  71.2  0.00000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  33.75 
 
 
328 aa  70.9  0.00000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.81 
 
 
715 aa  70.9  0.00000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_0812  histidine kinase  26.38 
 
 
1335 aa  70.5  0.00000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.127825  normal 
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  33.88 
 
 
443 aa  70.5  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0497788 
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  33.06 
 
 
443 aa  70.9  0.00000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal 
 
 
-
 
NC_009943  Dole_1090  response regulator receiver protein  36.07 
 
 
846 aa  70.9  0.00000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.874134  n/a   
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.71 
 
 
593 aa  70.1  0.00000000003  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.71 
 
 
593 aa  70.1  0.00000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011726  PCC8801_3665  response regulator receiver protein  35.09 
 
 
123 aa  70.1  0.00000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_4937  two component transcriptional regulator  36.44 
 
 
257 aa  69.7  0.00000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.565868 
 
 
-
 
NC_008576  Mmc1_2304  response regulator receiver protein  34.17 
 
 
150 aa  69.7  0.00000000004  Magnetococcus sp. MC-1  Bacteria  normal  0.0766818  normal  0.411617 
 
 
-
 
NC_013161  Cyan8802_3719  response regulator receiver protein  35.09 
 
 
123 aa  70.1  0.00000000004  Cyanothece sp. PCC 8802  Bacteria  normal  0.173125  normal  0.315103 
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  34.17 
 
 
204 aa  69.7  0.00000000005  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_011729  PCC7424_1976  multi-sensor signal transduction histidine kinase  35.77 
 
 
1383 aa  69.3  0.00000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.624185 
 
 
-
 
NC_014248  Aazo_4225  multi-sensor hybrid histidine kinase  33.55 
 
 
1322 aa  69.7  0.00000000005  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_27181  two-component response regulator  36.84 
 
 
233 aa  69.3  0.00000000006  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  31.14 
 
 
235 aa  68.9  0.00000000007  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0792  response regulator receiver modulated metal dependent phosphohydrolase  30.54 
 
 
331 aa  68.9  0.00000000007  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3231  response regulator receiver modulated metal dependent phosphohydrolase  30.54 
 
 
331 aa  68.9  0.00000000007  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_3155  two component transcriptional regulator  35.25 
 
 
228 aa  68.9  0.00000000008  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3334  response regulator receiver modulated metal dependent phosphohydrolase  30.54 
 
 
331 aa  68.6  0.00000000008  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  35.03 
 
 
441 aa  68.6  0.00000000009  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012560  Avin_50640  response regulator with metal dependent phosphohydrolase activity (two-component)  36.29 
 
 
347 aa  68.6  0.00000000009  Azotobacter vinelandii DJ  Bacteria  normal  0.121542  n/a   
 
 
-
 
NC_008820  P9303_26471  two-component response regulator  34.88 
 
 
268 aa  68.6  0.00000000009  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.889517 
 
 
-
 
NC_010002  Daci_4352  multi-sensor hybrid histidine kinase  30.72 
 
 
1287 aa  68.2  0.0000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.06083 
 
 
-
 
NC_013132  Cpin_2355  response regulator receiver protein  31.97 
 
 
129 aa  68.6  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0098  two component transcriptional regulator  34.65 
 
 
229 aa  68.2  0.0000000001  Halorhodospira halophila SL1  Bacteria  normal  0.761303  n/a   
 
 
-
 
NC_013757  Gobs_0116  multi-sensor signal transduction histidine kinase  37.1 
 
 
1711 aa  68.6  0.0000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.257821  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  27.4 
 
 
376 aa  67.8  0.0000000001  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  40.37 
 
 
384 aa  68.6  0.0000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4550  response regulator receiver protein  36.36 
 
 
127 aa  68.2  0.0000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010717  PXO_02492  phosphate regulon transcriptional regulatory protein PhoB  34.68 
 
 
229 aa  67.8  0.0000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.506678  n/a   
 
 
-
 
NC_011884  Cyan7425_4611  response regulator receiver sensor signal transduction histidine kinase  29.67 
 
 
1002 aa  67.8  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.367657 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  35.25 
 
 
456 aa  67.4  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  34.55 
 
 
359 aa  67.4  0.0000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  31.58 
 
 
461 aa  67.8  0.0000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_007520  Tcr_1095  response regulator receiver domain-containing protein  33.61 
 
 
118 aa  67.8  0.0000000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.344664  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  38.21 
 
 
441 aa  67.8  0.0000000002  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_007912  Sde_1409  Signal transduction histidine kinase-like  31.88 
 
 
685 aa  67.4  0.0000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3742  two component transcriptional regulator, winged helix family  33.06 
 
 
263 aa  67.8  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5621  two component AraC family transcriptional regulator  31.91 
 
 
277 aa  67.8  0.0000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.289619  n/a   
 
 
-
 
NC_013061  Phep_1317  ATP-binding region ATPase domain protein  30.48 
 
 
1370 aa  67.4  0.0000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  34.33 
 
 
488 aa  67.8  0.0000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  29.45 
 
 
337 aa  67.4  0.0000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_013510  Tcur_4775  multi-sensor signal transduction histidine kinase  33.08 
 
 
1383 aa  67.8  0.0000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_5986  two component AraC family transcriptional regulator  31.91 
 
 
277 aa  67.8  0.0000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0117191 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  34.13 
 
 
566 aa  67.8  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010002  Daci_6015  response regulator receiver modulated metal dependent phosphohydrolase  32.72 
 
 
333 aa  67.4  0.0000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  35.11 
 
 
346 aa  67.4  0.0000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  32.79 
 
 
503 aa  67.4  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6477  two component AraC family transcriptional regulator  31.91 
 
 
277 aa  67.8  0.0000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0923467 
 
 
-
 
NC_013440  Hoch_2262  response regulator receiver sensor signal transduction histidine kinase  34.13 
 
 
406 aa  67  0.0000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.146487 
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  35.77 
 
 
379 aa  67  0.0000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_007336  Reut_C6413  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  29.6 
 
 
404 aa  67  0.0000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.341429  n/a   
 
 
-
 
NC_011071  Smal_0824  two component transcriptional regulator, winged helix family  35.59 
 
 
229 aa  67  0.0000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  33.6 
 
 
457 aa  66.6  0.0000000003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0213  response regulator receiver domain-containing protein  33.33 
 
 
128 aa  66.6  0.0000000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2472  response regulator receiver protein  33.33 
 
 
216 aa  67  0.0000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0912  metal-dependent phosphohydrolase HD sub domain protein  32.03 
 
 
371 aa  67  0.0000000003  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  36.43 
 
 
353 aa  66.6  0.0000000003  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_013162  Coch_1010  histidine kinase  33.05 
 
 
1347 aa  66.6  0.0000000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0363668  n/a   
 
 
-
 
NC_009428  Rsph17025_1472  response regulator receiver protein  33.05 
 
 
122 aa  66.2  0.0000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.413604  normal 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  32.52 
 
 
363 aa  66.6  0.0000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
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