More than 300 homologs were found in PanDaTox collection
for query gene RPB_4105 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007778  RPB_4105  response regulator receiver domain-containing protein  100 
 
 		 229 aa  454  1e-127  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.0374743 
 
 
-
 
NC_007948  Bpro_0213  response regulator receiver domain-containing protein  53.45 
 
 		 128 aa  130  2.0000000000000002e-29  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_0840  response regulator receiver protein  52.63 
 
 		 132 aa  127  2.0000000000000002e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_4314  response regulator receiver protein  51.72 
 
 		 128 aa  118  9e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.7882  normal  0.646224 
 
 
-
 
NC_011004  Rpal_1744  response regulator receiver protein  36.41 
 
 		 229 aa  118  9e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_3967  response regulator receiver domain-containing protein  36.22 
 
 		 253 aa  115  3.9999999999999997e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.365316 
 
 
-
 
NC_008009  Acid345_3504  response regulator receiver protein  53.51 
 
 		 127 aa  114  1.0000000000000001e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_0856  response regulator receiver protein  49.58 
 
 		 126 aa  106  3e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  0.0534273 
 
 
-
 
NC_009664  Krad_0333  response regulator receiver protein  50.43 
 
 		 126 aa  100  2e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.139071  normal  1 
 
 
-
 
NC_007413  Ava_2419  response regulator receiver domain-containing protein  46.55 
 
 		 124 aa  100  3e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  0.730066  hitchhiker  0.0000120546 
 
 
-
 
NC_009511  Swit_1161  response regulator receiver protein  45 
 
 		 126 aa  99.8  3e-20  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.606485 
 
 
-
 
NC_007413  Ava_0239  response regulator receiver domain-containing protein  44.74 
 
 		 132 aa  99.8  4e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_2946  response regulator receiver protein  45.3 
 
 		 124 aa  99.8  4e-20  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_1519  response regulator receiver protein  48.72 
 
 		 125 aa  98.6  6e-20  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.043846  n/a   
 
 
-
 
NC_011729  PCC7424_3993  response regulator receiver protein  41.38 
 
 		 124 aa  92.4  5e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0199898 
 
 
-
 
NC_008347  Mmar10_2120  response regulator receiver protein  38.79 
 
 		 131 aa  91.3  1e-17  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  38.97 
 
 		 365 aa  90.1  2e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0748941 
 
 
-
 
NC_011729  PCC7424_4550  response regulator receiver protein  40.34 
 
 		 127 aa  90.1  2e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  41.94 
 
 		 316 aa  89.4  4e-17  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013161  Cyan8802_3719  response regulator receiver protein  37.93 
 
 		 123 aa  89  6e-17  Cyanothece sp. PCC 8802  Bacteria  normal  0.173125  normal  0.315103 
 
 
-
 
NC_011726  PCC8801_3665  response regulator receiver protein  37.93 
 
 		 123 aa  89  6e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_0963  two component transcriptional regulator  39.84 
 
 		 225 aa  88.6  7e-17  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_4227  response regulator receiver protein  42.24 
 
 		 130 aa  87.8  1e-16  'Nostoc azollae' 0708  Bacteria  normal  0.482069  n/a   
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  33.92 
 
 		 245 aa  87.8  1e-16  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal  1 
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  40.83 
 
 		 360 aa  87.4  2e-16  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011729  PCC7424_1722  response regulator receiver protein  37.61 
 
 		 123 aa  87  2e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00000000000000956357 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  39.52 
 
 		 314 aa  86.7  3e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_1573  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region  42.24 
 
 		 373 aa  85.9  5e-16  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  39.26 
 
 		 384 aa  85.9  5e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  41.53 
 
 		 350 aa  85.5  6e-16  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_4003  response regulator  43.22 
 
 		 357 aa  85.1  7e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_3942  response regulator receiver protein  43.22 
 
 		 163 aa  85.1  8e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  41.53 
 
 		 348 aa  85.1  9e-16  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_2589  response regulator receiver modulated metal dependent phosphohydrolase  36.75 
 
 		 375 aa  84.7  0.000000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0322399 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  41.53 
 
 		 348 aa  84.7  0.000000000000001  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_3140  response regulator receiver protein  43.86 
 
 		 128 aa  84.7  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.797309 
 
 
-
 
NC_007298  Daro_3458  response regulator receiver  34.23 
 
 		 365 aa  83.6  0.000000000000002  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  32.56 
 
 		 245 aa  84  0.000000000000002  Synechococcus sp. CC9902  Bacteria  normal  1  n/a   
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  35.85 
 
 		 348 aa  83.6  0.000000000000003  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  40.68 
 
 		 377 aa  83.2  0.000000000000003  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  35.95 
 
 		 242 aa  82.8  0.000000000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_63210  putative two-component response regulator  42.02 
 
 		 393 aa  82.8  0.000000000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  36.31 
 
 		 236 aa  82.4  0.000000000000005  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal  1 
 
 
-
 
NC_013440  Hoch_2262  response regulator receiver sensor signal transduction histidine kinase  33.69 
 
 		 406 aa  82.4  0.000000000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.146487 
 
 
-
 
NC_009953  Sare_0219  two component transcriptional regulator  38.41 
 
 		 237 aa  82  0.000000000000006  Salinispora arenicola CNS-205  Bacteria  normal  0.127265  hitchhiker  0.00333518 
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  42.02 
 
 		 377 aa  82  0.000000000000007  Acidovorax sp. JS42  Bacteria  normal  1  normal  0.0516082 
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  40.34 
 
 		 322 aa  82  0.000000000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  41.18 
 
 		 310 aa  81.6  0.000000000000008  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_5503  response regulator receiver  41.18 
 
 		 393 aa  81.6  0.000000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  36.59 
 
 		 397 aa  81.6  0.00000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.543575 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  43.22 
 
 		 346 aa  81.6  0.00000000000001  Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  44.12 
 
 		 377 aa  80.5  0.00000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  41.53 
 
 		 377 aa  80.5  0.00000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0135  response regulator receiver modulated diguanylate cyclase  34.04 
 
 		 306 aa  80.5  0.00000000000002  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.248217 
 
 
-
 
NC_014165  Tbis_0845  response regulator receiver protein  43.65 
 
 		 125 aa  80.1  0.00000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.455865  normal  0.167506 
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  43.33 
 
 		 469 aa  80.1  0.00000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_009457  VC0395_A0963  response regulator  35.07 
 
 		 441 aa  80.5  0.00000000000002  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_1037  response regulator receiver protein  37.12 
 
 		 247 aa  80.5  0.00000000000002  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  40.6 
 
 		 353 aa  80.5  0.00000000000002  Magnetococcus sp. MC-1  Bacteria  normal  1  hitchhiker  0.000480818 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  35.17 
 
 		 395 aa  79.7  0.00000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  30.68 
 
 		 231 aa  80.1  0.00000000000003  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007519  Dde_1941  response regulator receiver sensor signal transduction histidine kinase  33.33 
 
 		 395 aa  80.1  0.00000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0596409  n/a   
 
 
-
 
NC_011891  A2cp1_2397  response regulator receiver modulated diguanylate cyclase  34.81 
 
 		 434 aa  80.1  0.00000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.593336  n/a   
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  30.68 
 
 		 231 aa  80.1  0.00000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  38.46 
 
 		 363 aa  79.7  0.00000000000003  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_2309  response regulator receiver modulated diguanylate cyclase  34.81 
 
 		 434 aa  80.1  0.00000000000003  Anaeromyxobacter sp. K  Bacteria  normal  0.484645  n/a   
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  32.47 
 
 		 443 aa  80.1  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal  1 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  35.59 
 
 		 231 aa  79.7  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  36 
 
 		 443 aa  79.3  0.00000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.0497788 
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  37.58 
 
 		 391 aa  79  0.00000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  34.59 
 
 		 488 aa  79  0.00000000000006  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.182398 
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  37.5 
 
 		 308 aa  79  0.00000000000006  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_2208  multi-sensor hybrid histidine kinase  41.18 
 
 		 823 aa  78.6  0.00000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.73393 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  39.37 
 
 		 353 aa  77.8  0.0000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  40.16 
 
 		 356 aa  77.8  0.0000000000001  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_2625  two component transcriptional regulator, winged helix family  35.46 
 
 		 237 aa  78.2  0.0000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000254862  normal  1 
 
 
-
 
NC_013173  Dbac_2855  response regulator receiver sensor signal transduction histidine kinase  39.83 
 
 		 348 aa  78.2  0.0000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  33.56 
 
 		 322 aa  77.8  0.0000000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  41.03 
 
 		 339 aa  78.2  0.0000000000001  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  37.5 
 
 		 437 aa  77.4  0.0000000000002  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_007354  Ecaj_0304  response regulator PleD  42.15 
 
 		 458 aa  77  0.0000000000002  Ehrlichia canis str. Jake  Bacteria  normal  0.0864091  n/a   
 
 
-
 
NC_010506  Swoo_0828  response regulator receiver modulated diguanylate cyclase  35.59 
 
 		 324 aa  77.4  0.0000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1463  response regulator receiver modulated metal dependent phosphohydrolase  41.18 
 
 		 364 aa  77  0.0000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.404054 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.42 
 
 		 853 aa  77  0.0000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0836  response regulator receiver protein  34.9 
 
 		 395 aa  77.4  0.0000000000002  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  30.3 
 
 		 232 aa  77  0.0000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  35.04 
 
 		 308 aa  77.4  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_1040  response regulator receiver sensor signal transduction histidine kinase  30.46 
 
 		 365 aa  76.6  0.0000000000003  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_4166  response regulator  34.39 
 
 		 508 aa  76.6  0.0000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_4481  sensor histidine kinase/response regulator  28.96 
 
 		 982 aa  76.6  0.0000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_3668  response regulator receiver protein  61.02 
 
 		 68 aa  76.3  0.0000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  30.65 
 
 		 437 aa  76.6  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007799  ECH_0773  response regulator PleD  42.15 
 
 		 458 aa  76.6  0.0000000000003  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  37.29 
 
 		 303 aa  76.6  0.0000000000003  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  0.13601 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  39.84 
 
 		 309 aa  76.6  0.0000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.15819 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  35.48 
 
 		 566 aa  76.6  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal  1 
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  42.62 
 
 		 457 aa  76.6  0.0000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_008576  Mmc1_2455  response regulator receiver modulated metal dependent phosphohydrolase  44.26 
 
 		 376 aa  76.6  0.0000000000003  Magnetococcus sp. MC-1  Bacteria  normal  0.46136  normal  0.292815 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  40.17 
 
 		 340 aa  76.6  0.0000000000003  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.129077 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  28.09 
 
 		 352 aa  76.6  0.0000000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
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