More than 300 homologs were found in PanDaTox collection
for query gene Rpal_1744 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1744  response regulator receiver protein  100 
 
 
229 aa  454  1e-127  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3967  response regulator receiver domain-containing protein  62.68 
 
 
253 aa  269  2.9999999999999997e-71  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.365316 
 
 
-
 
NC_007778  RPB_4105  response regulator receiver domain-containing protein  36.41 
 
 
229 aa  123  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0374743 
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  36 
 
 
443 aa  85.1  9e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal 
 
 
-
 
NC_011729  PCC7424_1722  response regulator receiver protein  44.04 
 
 
123 aa  85.1  9e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00000000000000956357 
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  36.8 
 
 
443 aa  84.7  0.000000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0497788 
 
 
-
 
NC_011726  PCC8801_3665  response regulator receiver protein  38.14 
 
 
123 aa  81.3  0.00000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3719  response regulator receiver protein  38.14 
 
 
123 aa  81.3  0.00000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.173125  normal  0.315103 
 
 
-
 
NC_008312  Tery_4491  two component LuxR family transcriptional regulator  37.9 
 
 
233 aa  81.3  0.00000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.697305 
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  34.97 
 
 
231 aa  80.9  0.00000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  34.97 
 
 
231 aa  80.9  0.00000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_2262  response regulator receiver sensor signal transduction histidine kinase  38.33 
 
 
406 aa  80.9  0.00000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.146487 
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  35.54 
 
 
226 aa  79.3  0.00000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  35.25 
 
 
231 aa  79.3  0.00000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_009439  Pmen_4314  response regulator receiver protein  35.9 
 
 
128 aa  77  0.0000000000002  Pseudomonas mendocina ymp  Bacteria  normal  0.7882  normal  0.646224 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  31.55 
 
 
397 aa  77  0.0000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  37.4 
 
 
374 aa  77  0.0000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  37.4 
 
 
374 aa  77  0.0000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6413  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  34.75 
 
 
404 aa  76.3  0.0000000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.341429  n/a   
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  30.37 
 
 
353 aa  76.6  0.0000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_011831  Cagg_0840  response regulator receiver protein  38.26 
 
 
132 aa  76.3  0.0000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  36.84 
 
 
235 aa  76.3  0.0000000000004  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  35.54 
 
 
231 aa  75.9  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_007413  Ava_2419  response regulator receiver domain-containing protein  37.82 
 
 
124 aa  75.9  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.730066  hitchhiker  0.0000120546 
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  37.5 
 
 
619 aa  75.5  0.0000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  29.82 
 
 
338 aa  75.5  0.0000000000007  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4611  response regulator receiver sensor signal transduction histidine kinase  34.97 
 
 
1002 aa  75.5  0.0000000000007  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.367657 
 
 
-
 
NC_007604  Synpcc7942_0095  two component transcriptional regulator  38.1 
 
 
249 aa  75.1  0.0000000000009  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1494  response regulator receiver protein  34.33 
 
 
138 aa  74.7  0.000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  33.78 
 
 
384 aa  74.7  0.000000000001  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_007413  Ava_1627  response regulator receiver domain-containing protein  37.61 
 
 
125 aa  74.3  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.113437 
 
 
-
 
NC_007948  Bpro_4150  response regulator receiver protein  33.33 
 
 
125 aa  74.3  0.000000000001  Polaromonas sp. JS666  Bacteria  normal  normal  0.583085 
 
 
-
 
NC_007298  Daro_1771  PAS:GGDEF  35.48 
 
 
449 aa  73.9  0.000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0239  response regulator receiver domain-containing protein  36.67 
 
 
132 aa  73.9  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  36.21 
 
 
245 aa  73.6  0.000000000002  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  37.07 
 
 
245 aa  73.9  0.000000000002  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_009511  Swit_1161  response regulator receiver protein  37.27 
 
 
126 aa  73.9  0.000000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.606485 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  32.73 
 
 
488 aa  73.9  0.000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_013730  Slin_1037  response regulator receiver protein  36.36 
 
 
247 aa  73.6  0.000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0792  response regulator receiver modulated metal dependent phosphohydrolase  36 
 
 
331 aa  73.6  0.000000000002  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3231  response regulator receiver modulated metal dependent phosphohydrolase  36 
 
 
331 aa  73.6  0.000000000002  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1645  response regulator receiver modulated diguanylate cyclase  32.19 
 
 
308 aa  73.6  0.000000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.456967 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  33.06 
 
 
231 aa  73.2  0.000000000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  30.06 
 
 
314 aa  73.2  0.000000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  33.6 
 
 
204 aa  73.2  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3818  PAS/PAC sensor hybrid histidine kinase  30.57 
 
 
1426 aa  73.2  0.000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_29300  Response regulator  38.21 
 
 
310 aa  73.2  0.000000000003  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  31.62 
 
 
239 aa  72.8  0.000000000004  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_008025  Dgeo_2199  response regulator receiver/SARP domain-containing protein  34.21 
 
 
344 aa  72.8  0.000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.425276 
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  31.62 
 
 
239 aa  72.8  0.000000000004  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.33 
 
 
593 aa  72.4  0.000000000005  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_007948  Bpro_0213  response regulator receiver domain-containing protein  35.65 
 
 
128 aa  72.4  0.000000000005  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.33 
 
 
593 aa  72.4  0.000000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_4937  two component transcriptional regulator  38.21 
 
 
257 aa  72.4  0.000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.565868 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  32.09 
 
 
363 aa  72.4  0.000000000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2180  response regulator receiver  34.45 
 
 
151 aa  72.4  0.000000000006  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.269305  n/a   
 
 
-
 
NC_008345  Sfri_1019  PAS/PAC sensor hybrid histidine kinase  32.82 
 
 
869 aa  72  0.000000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1040  response regulator receiver sensor signal transduction histidine kinase  33.08 
 
 
365 aa  72  0.000000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2397  response regulator receiver modulated diguanylate cyclase  38.02 
 
 
434 aa  72  0.000000000007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.593336  n/a   
 
 
-
 
NC_011145  AnaeK_2309  response regulator receiver modulated diguanylate cyclase  38.02 
 
 
434 aa  72  0.000000000008  Anaeromyxobacter sp. K  Bacteria  normal  0.484645  n/a   
 
 
-
 
NC_007958  RPD_1666  ATP-binding region, ATPase-like  35.77 
 
 
1427 aa  72  0.000000000008  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.207779 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  28.75 
 
 
503 aa  72  0.000000000008  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  31.25 
 
 
338 aa  71.6  0.000000000008  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  31.25 
 
 
338 aa  71.6  0.000000000008  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  34.21 
 
 
354 aa  71.6  0.000000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  31.25 
 
 
338 aa  71.6  0.000000000009  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3164  hybrid sensory histidine kinase BarA  27.35 
 
 
918 aa  71.6  0.00000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.0703153 
 
 
-
 
NC_011831  Cagg_0863  response regulator receiver modulated metal dependent phosphohydrolase  38.26 
 
 
351 aa  71.2  0.00000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.297515  normal  0.141829 
 
 
-
 
NC_011094  SeSA_A3117  hybrid sensory histidine kinase BarA  27.35 
 
 
918 aa  71.2  0.00000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.306406  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  31.85 
 
 
440 aa  71.6  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_011884  Cyan7425_3742  two component transcriptional regulator, winged helix family  35.71 
 
 
263 aa  71.6  0.00000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1976  multi-sensor signal transduction histidine kinase  34.43 
 
 
1383 aa  71.2  0.00000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.624185 
 
 
-
 
NC_013204  Elen_2563  two component transcriptional regulator, winged helix family  34.96 
 
 
230 aa  70.9  0.00000000001  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3099  hybrid sensory histidine kinase BarA  27.35 
 
 
918 aa  71.2  0.00000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.528607  n/a   
 
 
-
 
NC_011662  Tmz1t_0227  two component transcriptional regulator PhoB, winged helix family  35.54 
 
 
236 aa  71.2  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3278  hybrid sensory histidine kinase BarA  27.35 
 
 
918 aa  71.6  0.00000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.225719 
 
 
-
 
NC_013061  Phep_4008  response regulator receiver  34.68 
 
 
1374 aa  71.6  0.00000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.702059  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  38.66 
 
 
440 aa  71.2  0.00000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_011080  SNSL254_A3180  hybrid sensory histidine kinase BarA  27.35 
 
 
918 aa  71.6  0.00000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.359202 
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  39.02 
 
 
377 aa  70.9  0.00000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_011884  Cyan7425_0584  response regulator receiver protein  33.33 
 
 
216 aa  71.2  0.00000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.0767221  normal 
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  37.07 
 
 
242 aa  70.9  0.00000000002  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  34.48 
 
 
242 aa  70.1  0.00000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  30.56 
 
 
338 aa  70.1  0.00000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  39.2 
 
 
225 aa  70.9  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_007520  Tcr_1095  response regulator receiver domain-containing protein  33.61 
 
 
118 aa  70.1  0.00000000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.344664  n/a   
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  29.71 
 
 
349 aa  70.1  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  34.48 
 
 
242 aa  70.5  0.00000000002  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  39.2 
 
 
225 aa  70.9  0.00000000002  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  33.77 
 
 
566 aa  70.9  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_008340  Mlg_1105  two component transcriptional regulator  34.62 
 
 
229 aa  70.9  0.00000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.489008  normal 
 
 
-
 
NC_008576  Mmc1_2528  response regulator receiver protein  39.84 
 
 
378 aa  70.5  0.00000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.249668  normal  0.0734484 
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  36.64 
 
 
353 aa  70.9  0.00000000002  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  37.19 
 
 
310 aa  70.5  0.00000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_008577  Shewana3_3334  response regulator receiver modulated metal dependent phosphohydrolase  35.2 
 
 
331 aa  70.1  0.00000000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0860  response regulator  32.65 
 
 
339 aa  70.1  0.00000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_3040  histidine kinase  28.71 
 
 
1053 aa  70.1  0.00000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0526469  normal  0.364658 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  34.18 
 
 
367 aa  70.1  0.00000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2022  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.06 
 
 
589 aa  70.1  0.00000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009441  Fjoh_0637  histidine kinase  33.57 
 
 
813 aa  69.7  0.00000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
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