Gene Slin_0155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0155 
Symbol 
ID8723883 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp193938 
End bp197399 
Gene Length3462 bp 
Protein Length1153 aa 
Translation table11 
GC content55% 
IMG OID 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_003385020 
Protein GI284035090 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.359014 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000017622 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTGAGC GTGAATCGTT AGAGCCGTTT TTAGCCGGTG GTGGAGAGAT GGGACACTTG 
ATCCGATCGC TGGATTGGGC AAAAACGCCC CTTGGTCCTA TTTCCGCCTG GCCTCAGAGC
CTGCGAACGT CGGTTAGCTT GTGCCTCTCG TCAACGTTTC CTATTCTTAT TGCCTGGGGG
CCCGAAACCA TTCAGCTTTA CAATGACAGT TATCGACCCA TCTGTGGTGC CAAGCATCCG
GAGTCGATGG GGCAGAATTT TCGTATCTGC TGGGAAACAG CGCTGCCCGT TGTCGGGGAT
GCCTTTACAC GGGGGCAGCA GGGCGAAGGA ACCTATATTA AAGACCAGCG TATGTTTCTG
GATCGGTATG GCTATCTGGA AGAAGCGTTC ATGACGTTTT CTTTCGCACC TATCCGGGAT
GAGTCCGGTG ATGTAGGCGG CATTTTTCAC CCCATCACCG AAACAACTGA CAAGATGCTC
AGTGCCCGCA GAACCCAGGT TCTGCGGGAT GTGGCGGCCC TTGTTGGACA GGCAAAAACC
AATCAGGATA TCTACGCCAG TTTAGTAGAA GCGCAGAGCG GGTTTGAGCT GGATTTGCCT
TATTTGCTGT TTTACGAACT TGAGGAGGAT GGAAAACAGG CCAGACTCGT CAGTACGGCC
GGGCTGGCCG TCGATGTAGT GGTACCGCCC AATCTGAACC AGTTGGTCGT AGCCGAAACG
GACTGGCTCG CCAACCTGCC GGAAACGCTG ATCATTGACC GGTTGGACGA GCGTGTCGGT
CCCCTCGTGG GCGGCCCTTA TACGGAGTTT CCCCATACTG CCGTCCGGCT ACCCATTCTG
CTGTCGACCC GCGATCAGCC CACCGGGTTT TTACTCGCGG GGGTCAGTTC GCGTCGGGCA
CTCGATCAGG ATTACCTTAA CTTTTACGCG CTTCTGGCCA ATACGATTAG CACTGCTTTC
TCGAATGTGC ATGCGTATCA GGAGGAGCAG AAACGAGCCG AAGCGCTGGC TGCTATCGAC
CAGGCCAAAA CGGCGTTCTT CAATAATATC AGCCACGAGT TTCGGACACC GCTGACCCTG
ATGCTCGGTC CACTGGAAGA GCTATTGCAG GATACTGCCC TTCAGGAATC GACTTATAAA
CAACCCATAG AAGCCACCCA CCGCAATGCC CTGCGGTTGC TGAAACTGGT CAATAACCTG
CTCGATTTCA GTCGTATTGA AGCCGGTCGG GTAAAAGCCA GCTTCCGCCC CGTCGATCTG
GTCGGGCTGA CCGTCGATCT CGCCAGCAGT TTCCGCTCCC TGATCGAACG GGCCGGATTG
GAATTGAGCG TCGACTGTGA GCCGATGCCC GCTGTGGTGT ATGCCGATGC CGAGATGTGG
GAGAAAGTCG TGCTTAATCT GTTGTCAAAC GCCTTTAAAT ACACGCTGAA AGGCCATATA
GGGGTTCAGC TGACTGCCGA AGCCGATGGT GTTGTCCTTC GGGTATCAGA CACGGGTGTG
GGCATCCCGG CGGCAGAGCT GCCCCACATG TTTGAGCGTT TTCACCGGGT TGCCAATGCC
GGTGGCCGGA CTTATGAGGG CAGTGGCATT GGGCTCTCGC TGGTGCATGA ACTGGTGCGT
TTGCATGGCG GCACAATTAC CGTAACAAGT CGGGAAGGCG AGGGGAGTAC GTTTACGGTA
CGTTTGCCGC TGGGGAAAGA TCACCTGCCT CAGGATCAGG TGATCGAAGG CAGCTACCAG
AACCAGAAGA GCCAGTTGAC CGATACGTTC CTGCAGGAAG CCCGGACCAT GCTCTCGGAA
GAGATGTTGT CCGTAGACGT TGGCCGAATG CCGTCGGAAG CGGTTGAGTT CGACCAGGCA
ACGAAGATTC TGGTGGTCGA CGATAATGCC GATATGCGGG CGTACCTGAC CCGGCTGCTG
GCCCCTTATT TCACGGTCAG CACTGCTGTA AATGGGGCCG ATGCGATCCG GCAATTGGCC
ACAGACCTGC CTCAGCTTAT CCTGAGCGAT ATTATGATGC CGGTGATGGA CGGGAAAGAA
CTGCTGCGCC GGGTGAAGCA AAATCCGGTT ACGGCCCCCA TTCCGCTTAT CTTTCTATCA
GCCAGAGCCG GTCAGGAAGC CCGAATTGAT GGGCTCGAAG CCGGAGCAGA CGACTATCTG
GTAAAACCGT TTTCGAGCCT GGAACTCCTG ACCAAAATCA GGGCGCAGAT TAACCTGAAC
CAGACCCGTC GACAGGGCGA AACCCGCCTG CGAAGTCTGG TAGAACAGGC TCCGGTAGCC
ATGCTCCTGA TGAAAGGCAG TAATCTGGTC ATCGATCTGG TTAACCAGGC CATGCTGGAG
CTTATTCAGC GGGAGAAAGA TATACTGGGT AAACCCCTTG TCGACGCAAT GCCGGAATTG
AACGGGCAGG GGTTTATAGA CCGCTGCCTG ACGGTGTACC AGACTGGTGT TCCCGATCAG
GGGTGGTCCA TTGCCATACC TGTTAACCGG AACAACCGCG TCGAAACGGG TTATTTCAAC
ATACTGCTTA CACCTTATTA CGAGGGGAAT GCCATTACGG GCGTGCTGGA GGTGTGCACC
GAAATAACCG AGCTTGTGGA GGTCAACAAA GCACTGGCCA CCAGCGAAGA CCGGTACCGC
CAGCTATCAA CGGCCCTGGA TGAGCAGGTT CAGCAACGCA CGGCGGAGCT ACAGGCGTCG
ATCCACGATT TGCAGCGGTC TAACGACAAT CTTCAGCAGT TCGCCTATGT GGCGTCGCAC
GATTTGCAGG AACCGTTGCG CAAAATACAG TCGTTCGGCG ATCTTCTCAA AAACCAGTAT
GCCGACAATC TGGGCGAAGG CATCGACTAT CTGAAACGGA TGCAGACGGC AGCCAATCGA
ATGTCGACGC TCATCCGCGA CTTGCTGAGC TTCTCCCGAA TCACCACTCG ACAGGAAGTG
ACCGAGACTG TTTCACTGGC CGAAACGCTC AGTATGGTCG TCCTGGATCT GGAGGTGATG
ATTCAGGAGA CCGGTGCCGA AATGCGAATC CATCCGTTGC CAACGGTACT GGGTGACCGT
TCACAACTGA TTCAGCTCTT TCAGAATTTG CTATCCAATG CCCTTAAATT CCGACGGAAG
AGTTCGGCCG GTGTGTCGGT GCCACCGGTA GTTGAGGTAA GTGCTCAACT GGTAAACGTG
TCGGAACTGC CTTCTACTGT GAGGCCCACT CGCTCGGTAG CCGCGTATTA CCGCATCGAT
GTGACGGACA ACGGAATCGG ATTCAATGAG AAATACCTGG ATCGTATTTT TCAGGTGTTT
CAGCGGCTGC ACGGCAAAAG TGAGTTTCAG GGTACAGGGA TCGGTCTGGC GATTTGCGAA
AAGGTGGTTG CGAATCATGG GGGGGTAATT ACGGCCCAAA GTCAGCCCGG CGAAGGGGCT
ACCTTCAGCG TATATCTGCC CGCAGTTTCG TTTCAGGACT AG
 
Protein sequence
MIERESLEPF LAGGGEMGHL IRSLDWAKTP LGPISAWPQS LRTSVSLCLS STFPILIAWG 
PETIQLYNDS YRPICGAKHP ESMGQNFRIC WETALPVVGD AFTRGQQGEG TYIKDQRMFL
DRYGYLEEAF MTFSFAPIRD ESGDVGGIFH PITETTDKML SARRTQVLRD VAALVGQAKT
NQDIYASLVE AQSGFELDLP YLLFYELEED GKQARLVSTA GLAVDVVVPP NLNQLVVAET
DWLANLPETL IIDRLDERVG PLVGGPYTEF PHTAVRLPIL LSTRDQPTGF LLAGVSSRRA
LDQDYLNFYA LLANTISTAF SNVHAYQEEQ KRAEALAAID QAKTAFFNNI SHEFRTPLTL
MLGPLEELLQ DTALQESTYK QPIEATHRNA LRLLKLVNNL LDFSRIEAGR VKASFRPVDL
VGLTVDLASS FRSLIERAGL ELSVDCEPMP AVVYADAEMW EKVVLNLLSN AFKYTLKGHI
GVQLTAEADG VVLRVSDTGV GIPAAELPHM FERFHRVANA GGRTYEGSGI GLSLVHELVR
LHGGTITVTS REGEGSTFTV RLPLGKDHLP QDQVIEGSYQ NQKSQLTDTF LQEARTMLSE
EMLSVDVGRM PSEAVEFDQA TKILVVDDNA DMRAYLTRLL APYFTVSTAV NGADAIRQLA
TDLPQLILSD IMMPVMDGKE LLRRVKQNPV TAPIPLIFLS ARAGQEARID GLEAGADDYL
VKPFSSLELL TKIRAQINLN QTRRQGETRL RSLVEQAPVA MLLMKGSNLV IDLVNQAMLE
LIQREKDILG KPLVDAMPEL NGQGFIDRCL TVYQTGVPDQ GWSIAIPVNR NNRVETGYFN
ILLTPYYEGN AITGVLEVCT EITELVEVNK ALATSEDRYR QLSTALDEQV QQRTAELQAS
IHDLQRSNDN LQQFAYVASH DLQEPLRKIQ SFGDLLKNQY ADNLGEGIDY LKRMQTAANR
MSTLIRDLLS FSRITTRQEV TETVSLAETL SMVVLDLEVM IQETGAEMRI HPLPTVLGDR
SQLIQLFQNL LSNALKFRRK SSAGVSVPPV VEVSAQLVNV SELPSTVRPT RSVAAYYRID
VTDNGIGFNE KYLDRIFQVF QRLHGKSEFQ GTGIGLAICE KVVANHGGVI TAQSQPGEGA
TFSVYLPAVS FQD