More than 300 homologs were found in PanDaTox collection
for query gene Mnod_5351 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_5351  transcriptional regulator, LuxR family  100 
 
 
229 aa  443  1.0000000000000001e-124  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.649636  n/a   
 
 
-
 
NC_010511  M446_5044  LuxR family transcriptional regulator  80.52 
 
 
230 aa  341  5e-93  Methylobacterium sp. 4-46  Bacteria  normal  0.263575  hitchhiker  0.00837426 
 
 
-
 
NC_011757  Mchl_2254  transcriptional regulator, LuxR family  60.38 
 
 
235 aa  204  9e-52  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1932  transcriptional regulator, LuxR family  57.02 
 
 
241 aa  199  1.9999999999999998e-50  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0592371 
 
 
-
 
NC_010172  Mext_1977  regulatory protein LuxR  59.43 
 
 
235 aa  199  3e-50  Methylobacterium extorquens PA1  Bacteria  normal  0.215897  normal 
 
 
-
 
NC_010505  Mrad2831_0756  LuxR family transcriptional regulator  59.55 
 
 
228 aa  192  2e-48  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.826443 
 
 
-
 
NC_010505  Mrad2831_1294  LuxR family transcriptional regulator  47.93 
 
 
252 aa  159  4e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3523  two component LuxR family transcriptional regulator  36.15 
 
 
224 aa  97.1  2e-19  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  34.87 
 
 
213 aa  79.7  0.00000000000003  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  32.06 
 
 
233 aa  79  0.00000000000006  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  32.51 
 
 
214 aa  78.2  0.0000000000001  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  32.02 
 
 
214 aa  77  0.0000000000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  25.64 
 
 
215 aa  77  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  31.7 
 
 
221 aa  76.3  0.0000000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  31.73 
 
 
215 aa  75.5  0.0000000000006  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0083  two component LuxR family transcriptional regulator  34.12 
 
 
210 aa  75.5  0.0000000000007  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  28.37 
 
 
215 aa  75.5  0.0000000000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  39.61 
 
 
220 aa  75.5  0.0000000000007  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.929677 
 
 
-
 
NC_007973  Rmet_3576  two component LuxR family transcriptional regulator  33.18 
 
 
228 aa  75.1  0.0000000000008  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4349  two component LuxR family transcriptional regulator  38.1 
 
 
206 aa  74.7  0.000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  0.20794  normal  0.534464 
 
 
-
 
NC_008752  Aave_1121  two component LuxR family transcriptional regulator  34.16 
 
 
222 aa  74.3  0.000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.864132  normal  0.872256 
 
 
-
 
NC_013235  Namu_2014  two component transcriptional regulator, LuxR family  35.33 
 
 
212 aa  73.6  0.000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.172206  hitchhiker  0.00394331 
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  28.92 
 
 
215 aa  72.4  0.000000000005  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  31.07 
 
 
212 aa  72.4  0.000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  34.21 
 
 
223 aa  72.4  0.000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  32.69 
 
 
217 aa  72.4  0.000000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  29.8 
 
 
215 aa  72  0.000000000006  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  35.08 
 
 
231 aa  72  0.000000000007  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  25.23 
 
 
214 aa  72  0.000000000007  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  29.33 
 
 
213 aa  71.6  0.000000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  29.52 
 
 
216 aa  70.9  0.00000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  31.46 
 
 
216 aa  70.9  0.00000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  32.82 
 
 
222 aa  71.6  0.00000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_011094  SeSA_A1489  EsrB  25.93 
 
 
212 aa  70.9  0.00000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.121116  normal  0.320198 
 
 
-
 
NC_007348  Reut_B5451  two component LuxR family transcriptional regulator  28.29 
 
 
223 aa  70.9  0.00000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.761649  n/a   
 
 
-
 
NC_011205  SeD_A1950  hypothetical protein  25.93 
 
 
212 aa  70.9  0.00000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0094858 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  29.52 
 
 
216 aa  70.9  0.00000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  31.1 
 
 
220 aa  70.9  0.00000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_011083  SeHA_C1526  two-component response regulator EsrB  25.93 
 
 
212 aa  70.9  0.00000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.577557  hitchhiker  0.00169027 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  28.17 
 
 
214 aa  70.9  0.00000000001  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  31.13 
 
 
214 aa  70.5  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_011149  SeAg_B1780  EsrB  25.93 
 
 
212 aa  70.5  0.00000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.111024  n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  28.99 
 
 
206 aa  70.1  0.00000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  35.25 
 
 
210 aa  70.5  0.00000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000518478 
 
 
-
 
NC_008825  Mpe_A0357  two-component response regulator  29.77 
 
 
210 aa  70.5  0.00000000002  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00848176  normal 
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  27.13 
 
 
214 aa  70.9  0.00000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  24.44 
 
 
219 aa  69.7  0.00000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  33.12 
 
 
214 aa  70.1  0.00000000003  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  32.26 
 
 
216 aa  69.7  0.00000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  28.29 
 
 
215 aa  70.1  0.00000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  30.88 
 
 
214 aa  69.3  0.00000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  30.33 
 
 
223 aa  69.7  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.658241 
 
 
-
 
NC_009656  PSPA7_3950  LuxR family DNA-binding response regulator  39.82 
 
 
210 aa  69.3  0.00000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  0.331441  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  31.07 
 
 
215 aa  68.9  0.00000000006  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  31.07 
 
 
215 aa  68.9  0.00000000006  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  31.07 
 
 
215 aa  68.9  0.00000000006  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  31.07 
 
 
215 aa  68.9  0.00000000006  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  30.77 
 
 
213 aa  68.9  0.00000000006  Burkholderia phymatum STM815  Bacteria  normal  normal  0.53826 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  31.07 
 
 
215 aa  68.9  0.00000000006  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  31.07 
 
 
215 aa  68.9  0.00000000006  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  32.24 
 
 
209 aa  68.6  0.00000000007  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  27.94 
 
 
206 aa  68.6  0.00000000007  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  31.07 
 
 
215 aa  68.9  0.00000000007  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  33.01 
 
 
228 aa  68.6  0.00000000008  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal 
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  31.86 
 
 
212 aa  68.6  0.00000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.265772 
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  29.86 
 
 
224 aa  67.8  0.0000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1504  hypothetical protein  25.4 
 
 
212 aa  68.2  0.0000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.000000918459 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  27.71 
 
 
231 aa  68.2  0.0000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  27.98 
 
 
217 aa  67.8  0.0000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  28.77 
 
 
216 aa  68.2  0.0000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  27.44 
 
 
212 aa  67.8  0.0000000001  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  27.71 
 
 
231 aa  68.2  0.0000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  32.87 
 
 
218 aa  68.2  0.0000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  31.65 
 
 
218 aa  68.2  0.0000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_008255  CHU_1317  response regulator  26.76 
 
 
220 aa  67.8  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_008463  PA14_24710  putative two-component response regulator  31.86 
 
 
207 aa  67.8  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4476  two component transcriptional regulator, LuxR family  27.71 
 
 
215 aa  68.2  0.0000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  31.65 
 
 
218 aa  68.2  0.0000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0859  two component LuxR family transcriptional regulator  25.94 
 
 
210 aa  67.4  0.0000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.883984  normal 
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  32 
 
 
214 aa  67.8  0.0000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.10411 
 
 
-
 
NC_009800  EcHS_A3002  LuxR family transcriptional regulator  25.94 
 
 
210 aa  67.4  0.0000000002  Escherichia coli HS  Bacteria  decreased coverage  0.000000000000242381  n/a   
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  27.54 
 
 
212 aa  67  0.0000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007492  Pfl01_3254  two component LuxR family transcriptional regulator  35.83 
 
 
201 aa  67.4  0.0000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.49762 
 
 
-
 
NC_009513  Lreu_0898  two component LuxR family transcriptional regulator  22.75 
 
 
217 aa  67  0.0000000002  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000112877  n/a   
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  33.67 
 
 
221 aa  67.4  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0788  two component LuxR family transcriptional regulator  32.37 
 
 
218 aa  67.4  0.0000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.3296  normal 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  32.99 
 
 
212 aa  67.4  0.0000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  32.52 
 
 
228 aa  67.4  0.0000000002  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  29.05 
 
 
208 aa  67  0.0000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  29.76 
 
 
215 aa  67.4  0.0000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4126  transcriptional regulator, LuxR family  24.88 
 
 
210 aa  67  0.0000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000353041 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  27.19 
 
 
218 aa  67  0.0000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  29.76 
 
 
215 aa  67.4  0.0000000002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  29.76 
 
 
215 aa  67.4  0.0000000002  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3945  putative DNA-binding response regulator EsrB  26.87 
 
 
210 aa  66.6  0.0000000003  Yersinia pestis Angola  Bacteria  normal  0.0480381  normal 
 
 
-
 
NC_011138  MADE_01500  response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) protein  26.67 
 
 
218 aa  67  0.0000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  27.07 
 
 
236 aa  66.6  0.0000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_009656  PSPA7_2093  putative two-component response regulator  31.25 
 
 
207 aa  66.6  0.0000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  31.5 
 
 
214 aa  66.6  0.0000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00509748 
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  27.89 
 
 
213 aa  66.2  0.0000000004  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
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