More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0443 on replicon NC_007777
Organism: Frankia sp. CcI3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007777  Francci3_0443  response regulator receiver protein  100 
 
 		 250 aa  490  9.999999999999999e-139  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_6176  winged helix family two component response transcriptional regulator  94.8 
 
 		 247 aa  440  1e-123  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.186762 
 
 
-
 
NC_014165  Tbis_0453  putative winged helix family two component transcriptional regulator  68.67 
 
 		 251 aa  345  5e-94  Thermobispora bispora DSM 43833  Bacteria  normal  0.190844  normal  0.275136 
 
 
-
 
NC_013510  Tcur_0595  putative two component transcriptional regulator, winged helix family  70.28 
 
 		 237 aa  340  1e-92  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0895  response regulator receiver protein  73.3 
 
 		 237 aa  334  7.999999999999999e-91  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008578  Acel_2025  response regulator receiver protein  74.34 
 
 		 261 aa  328  7e-89  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_8253  putative two component transcriptional regulator, winged helix family  74.06 
 
 		 264 aa  318  6e-86  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009664  Krad_0879  putative two component transcriptional regulator, winged helix family  68.44 
 
 		 259 aa  309  4e-83  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.249855  hitchhiker  0.00478466 
 
 
-
 
NC_007333  Tfu_2737  transcriptional regulatory protein  67.81 
 
 		 253 aa  305  3e-82  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_4376  putative two component transcriptional regulator, winged helix family  64.17 
 
 		 255 aa  301  5.000000000000001e-81  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013521  Sked_04930  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  67.71 
 
 		 249 aa  301  6.000000000000001e-81  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.793732  normal  1 
 
 
-
 
NC_012669  Bcav_3419  putative two component transcriptional regulator, winged helix family  65.92 
 
 		 240 aa  300  2e-80  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014151  Cfla_3090  putative two component transcriptional regulator, winged helix family  65.92 
 
 		 241 aa  298  8e-80  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  hitchhiker  0.0000121276 
 
 
-
 
NC_009380  Strop_0293  winged helix family two component response transcriptional regulator  62.03 
 
 		 239 aa  295  3e-79  Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_6372  putative two component transcriptional regulator, winged helix family  60.94 
 
 		 236 aa  293  1e-78  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_0337  winged helix family two component response transcriptional regulator  61.97 
 
 		 239 aa  291  5e-78  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  0.0279779 
 
 
-
 
NC_008699  Noca_4240  transcriptional regulator domain-containing protein  66.67 
 
 		 257 aa  291  6e-78  Nocardioides sp. JS614  Bacteria  normal  0.466466  n/a   
 
 
-
 
NC_013530  Xcel_3035  putative two component transcriptional regulator, winged helix family  63.87 
 
 		 243 aa  291  7e-78  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_008146  Mmcs_4525  response regulator receiver protein  60.16 
 
 		 257 aa  285  7e-76  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_4612  response regulator receiver protein  60.16 
 
 		 257 aa  285  7e-76  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_4908  response regulator receiver protein  60.16 
 
 		 257 aa  285  7e-76  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_6823  putative two component transcriptional regulator, winged helix family  65.78 
 
 		 250 aa  284  9e-76  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013174  Jden_0439  putative two component transcriptional regulator, winged helix family  61.43 
 
 		 248 aa  283  2.0000000000000002e-75  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  0.190602 
 
 
-
 
NC_013757  Gobs_4646  putative two component transcriptional regulator, winged helix family  64.09 
 
 		 249 aa  283  2.0000000000000002e-75  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_5097  response regulator receiver protein  64.68 
 
 		 267 aa  281  7.000000000000001e-75  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_10833  transcriptional regulatory protein  66.5 
 
 		 255 aa  280  2e-74  Mycobacterium tuberculosis F11  Bacteria  normal  1  hitchhiker  0.00597919 
 
 
-
 
NC_011886  Achl_2724  putative two component transcriptional regulator, winged helix family  60.91 
 
 		 232 aa  278  7e-74  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00387379 
 
 
-
 
NC_009338  Mflv_1650  response regulator receiver protein  65.09 
 
 		 278 aa  277  1e-73  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0110992  normal  1 
 
 
-
 
NC_008541  Arth_3012  response regulator receiver protein  60.91 
 
 		 232 aa  275  7e-73  Arthrobacter sp. FB24  Bacteria  normal  0.721979  n/a   
 
 
-
 
NC_013159  Svir_37670  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  62.83 
 
 		 256 aa  269  4e-71  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.0528352 
 
 
-
 
NC_013235  Namu_4983  putative two component transcriptional regulator, winged helix family  58.87 
 
 		 232 aa  267  2e-70  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013441  Gbro_3935  transcriptional regulator domain protein  63.18 
 
 		 270 aa  263  1e-69  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_3545  putative two component transcriptional regulator, winged helix family  61.99 
 
 		 243 aa  263  2e-69  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.61486  n/a   
 
 
-
 
NC_010816  BLD_1194  putative response regulator  55.98 
 
 		 266 aa  258  7e-68  Bifidobacterium longum DJO10A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013721  HMPREF0424_0189  transcriptional regulatory protein, C-terminal domain protein  50 
 
 		 296 aa  239  4e-62  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  1 
 
 
-
 
NC_009565  TBFG_12898  transcriptional regulator  46.61 
 
 		 252 aa  161  1e-38  Mycobacterium tuberculosis F11  Bacteria  normal  0.385025  normal  1 
 
 
-
 
NC_013169  Ksed_03550  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  41.7 
 
 		 261 aa  149  4e-35  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.329191  normal  1 
 
 
-
 
NC_013440  Hoch_6843  putative two component transcriptional regulator, winged helix family  44.95 
 
 		 258 aa  145  6e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002936  DET1126  transcriptional regulator  50 
 
 		 223 aa  133  3e-30  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.0000289398  n/a   
 
 
-
 
NC_013552  DhcVS_944  transcriptional regulator  49.23 
 
 		 223 aa  132  5e-30  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET1162  transcriptional regulator, putative  43.71 
 
 		 238 aa  131  1.0000000000000001e-29  Dehalococcoides ethenogenes 195  Bacteria  normal  0.829609  n/a   
 
 
-
 
NC_009455  DehaBAV1_0955  two component transcriptional regulator  49.23 
 
 		 223 aa  130  2.0000000000000002e-29  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013124  Afer_0241  putative two component transcriptional regulator, winged helix family  51.94 
 
 		 217 aa  129  7.000000000000001e-29  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  41.32 
 
 		 234 aa  123  3e-27  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_013165  Shel_19870  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  43.02 
 
 		 224 aa  122  6e-27  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.931606  normal  1 
 
 
-
 
NC_013170  Ccur_08240  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  48 
 
 		 236 aa  119  3.9999999999999996e-26  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.956318  normal  0.778898 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  38.74 
 
 		 229 aa  119  4.9999999999999996e-26  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  0.834843 
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  36.41 
 
 		 226 aa  117  9.999999999999999e-26  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  37.95 
 
 		 232 aa  117  1.9999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  38.6 
 
 		 236 aa  116  3e-25  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  37.37 
 
 		 239 aa  116  3e-25  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  37.37 
 
 		 239 aa  116  3e-25  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  39.29 
 
 		 232 aa  114  1.0000000000000001e-24  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0154  two component transcriptional regulator  36.09 
 
 		 238 aa  114  2.0000000000000002e-24  Clostridium phytofermentans ISDg  Bacteria  normal  0.644268  n/a   
 
 
-
 
NC_011772  BCG9842_B3993  DNA-binding response regulator  36.41 
 
 		 223 aa  113  2.0000000000000002e-24  Bacillus cereus G9842  Bacteria  normal  1  normal  0.910988 
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  35.9 
 
 		 223 aa  114  2.0000000000000002e-24  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  35.9 
 
 		 223 aa  114  2.0000000000000002e-24  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK1193  response regulator  36.41 
 
 		 223 aa  114  2.0000000000000002e-24  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  38.04 
 
 		 223 aa  114  2.0000000000000002e-24  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  36.41 
 
 		 223 aa  114  2.0000000000000002e-24  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_009674  Bcer98_1021  two component transcriptional regulator  36.41 
 
 		 223 aa  114  2.0000000000000002e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_2015  putative two component transcriptional regulator, winged helix family  44.96 
 
 		 224 aa  114  2.0000000000000002e-24  Eggerthella lenta DSM 2243  Bacteria  normal  0.0839248  hitchhiker  0.0000000000000188648 
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  37.42 
 
 		 228 aa  114  2.0000000000000002e-24  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_005945  BAS1213  DNA-binding response regulator  36.41 
 
 		 223 aa  113  3e-24  Bacillus anthracis str. Sterne  Bacteria  normal  0.203275  n/a   
 
 
-
 
NC_005957  BT9727_1191  response regulator  35.9 
 
 		 223 aa  113  3e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_1312  DNA-binding response regulator  36.41 
 
 		 223 aa  113  3e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_2939  response regulator receiver  40.11 
 
 		 232 aa  112  6e-24  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  40.59 
 
 		 235 aa  111  9e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1838  two component transcriptional regulator  39.24 
 
 		 239 aa  111  1.0000000000000001e-23  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00000194698  n/a   
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  48.53 
 
 		 229 aa  111  1.0000000000000001e-23  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_009092  Shew_3419  two component transcriptional regulator  35.5 
 
 		 242 aa  111  1.0000000000000001e-23  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  39.39 
 
 		 230 aa  110  2.0000000000000002e-23  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  35.9 
 
 		 223 aa  110  2.0000000000000002e-23  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_1903  two component transcriptional regulator  37.35 
 
 		 230 aa  110  2.0000000000000002e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1215  two component transcriptional regulator  35.9 
 
 		 223 aa  110  3e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.533573  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  40 
 
 		 231 aa  110  3e-23  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_3871  two component transcriptional regulator, winged helix family  39.79 
 
 		 227 aa  109  3e-23  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000000473157  n/a   
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  38.04 
 
 		 227 aa  109  4.0000000000000004e-23  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_010003  Pmob_0875  two component transcriptional regulator  40.94 
 
 		 242 aa  109  4.0000000000000004e-23  Petrotoga mobilis SJ95  Bacteria  decreased coverage  0.000486966  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  39.63 
 
 		 226 aa  108  6e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  40.59 
 
 		 236 aa  108  6e-23  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  44.93 
 
 		 235 aa  108  7.000000000000001e-23  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_1922  two component transcriptional regulator  41.46 
 
 		 228 aa  108  7.000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_1658  two component transcriptional regulator, winged helix family  37.2 
 
 		 230 aa  108  7.000000000000001e-23  Clostridium cellulolyticum H10  Bacteria  normal  0.515101  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  39.04 
 
 		 237 aa  108  8.000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  36.26 
 
 		 226 aa  108  8.000000000000001e-23  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  0.132847 
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  39.27 
 
 		 233 aa  107  1e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  34.38 
 
 		 224 aa  108  1e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007604  Synpcc7942_2305  two component transcriptional regulator  36.9 
 
 		 228 aa  107  1e-22  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  0.79647 
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  41.67 
 
 		 230 aa  108  1e-22  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B0815  two component transcriptional regulator  37.7 
 
 		 248 aa  108  1e-22  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.348891 
 
 
-
 
NC_010718  Nther_1220  two component transcriptional regulator, winged helix family  43.18 
 
 		 233 aa  108  1e-22  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  hitchhiker  0.00991602 
 
 
-
 
NC_009767  Rcas_0421  two component transcriptional regulator  34.09 
 
 		 245 aa  107  1e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0518956  normal  1 
 
 
-
 
NC_011830  Dhaf_1756  two component transcriptional regulator, winged helix family  34.64 
 
 		 230 aa  107  2e-22  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.769657  n/a   
 
 
-
 
NC_011830  Dhaf_4687  two component transcriptional regulator, winged helix family  35.42 
 
 		 230 aa  107  2e-22  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000000280381  n/a   
 
 
-
 
NC_008322  Shewmr7_0669  two component transcriptional regulator  36.36 
 
 		 253 aa  107  2e-22  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.193178 
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  34.74 
 
 		 239 aa  107  2e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_4619  two component transcriptional regulator  34.09 
 
 		 245 aa  107  2e-22  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0926269 
 
 
-
 
NC_009674  Bcer98_2250  two component transcriptional regulator  34.39 
 
 		 225 aa  107  2e-22  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00000295266  n/a   
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  37.04 
 
 		 238 aa  107  2e-22  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>