More than 300 homologs were found in PanDaTox collection
for query gene Dred_1903 on replicon NC_009253
Organism: Desulfotomaculum reducens MI-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009253  Dred_1903  two component transcriptional regulator  100 
 
 
230 aa  465  9.999999999999999e-131  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  58.33 
 
 
237 aa  276  2e-73  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2981  two component transcriptional regulator  55.75 
 
 
229 aa  268  5e-71  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000201285  n/a   
 
 
-
 
NC_012793  GWCH70_2219  two component transcriptional regulator, winged helix family  55.22 
 
 
240 aa  258  6e-68  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  53.74 
 
 
228 aa  258  7e-68  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_013216  Dtox_3085  two component transcriptional regulator, winged helix family  57.21 
 
 
232 aa  257  1e-67  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000315463  hitchhiker  0.000599707 
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  55.31 
 
 
228 aa  256  2e-67  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_013205  Aaci_1728  two component transcriptional regulator, winged helix family  53.68 
 
 
233 aa  254  9e-67  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  49.78 
 
 
230 aa  252  3e-66  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  51.52 
 
 
238 aa  250  1e-65  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  53.98 
 
 
223 aa  248  5e-65  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  53.98 
 
 
223 aa  248  5e-65  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  53.98 
 
 
223 aa  247  9e-65  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1191  response regulator  53.54 
 
 
223 aa  246  2e-64  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1193  response regulator  53.54 
 
 
223 aa  246  2e-64  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  53.54 
 
 
223 aa  246  2e-64  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B3993  DNA-binding response regulator  53.98 
 
 
223 aa  246  2e-64  Bacillus cereus G9842  Bacteria  normal  normal  0.910988 
 
 
-
 
NC_005945  BAS1213  DNA-binding response regulator  53.54 
 
 
223 aa  246  3e-64  Bacillus anthracis str. Sterne  Bacteria  normal  0.203275  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  52.17 
 
 
238 aa  246  3e-64  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
NC_007530  GBAA_1312  DNA-binding response regulator  53.54 
 
 
223 aa  246  3e-64  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1215  two component transcriptional regulator  54.22 
 
 
223 aa  244  6e-64  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.533573  n/a   
 
 
-
 
NC_009674  Bcer98_1021  two component transcriptional regulator  53.1 
 
 
223 aa  244  9.999999999999999e-64  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1601  DNA-binding response regulator ResD  51.3 
 
 
250 aa  243  1.9999999999999999e-63  Bacillus cereus ATCC 10987  Bacteria  normal  0.953648  n/a   
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  51.1 
 
 
227 aa  243  1.9999999999999999e-63  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_011772  BCG9842_B3814  DNA-binding response regulator ResD  51.3 
 
 
238 aa  243  1.9999999999999999e-63  Bacillus cereus G9842  Bacteria  normal  hitchhiker  3.95849e-16 
 
 
-
 
NC_011725  BCB4264_A1531  DNA-binding response regulator ResD  51.3 
 
 
238 aa  243  1.9999999999999999e-63  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1569  DNA-binding response regulator ResD  51.3 
 
 
250 aa  243  1.9999999999999999e-63  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.45334e-32 
 
 
-
 
NC_011658  BCAH187_A1637  DNA-binding response regulator ResD  51.3 
 
 
250 aa  243  1.9999999999999999e-63  Bacillus cereus AH187  Bacteria  normal  0.0246031  n/a   
 
 
-
 
NC_005945  BAS1386  DNA-binding response regulator ResD  51.3 
 
 
238 aa  242  3e-63  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1359  response regulator  51.3 
 
 
238 aa  242  3e-63  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0319788  n/a   
 
 
-
 
NC_006274  BCZK1358  response regulator  51.3 
 
 
238 aa  242  3e-63  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1497  DNA-binding response regulator ResD  51.3 
 
 
238 aa  242  3e-63  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.862661  n/a   
 
 
-
 
NC_013411  GYMC61_0402  two component transcriptional regulator, winged helix family  53.68 
 
 
241 aa  243  3e-63  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  53.33 
 
 
227 aa  242  3.9999999999999997e-63  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_007644  Moth_0827  two component transcriptional regulator  52.42 
 
 
256 aa  242  3.9999999999999997e-63  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00211389  normal  0.244563 
 
 
-
 
NC_009632  SaurJH1_1580  response regulator receiver  50.43 
 
 
241 aa  241  6e-63  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1549  two component transcriptional regulator  50.43 
 
 
241 aa  241  6e-63  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0940  two component transcriptional regulator, winged helix family  54.67 
 
 
237 aa  240  1e-62  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.324642  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  51.33 
 
 
223 aa  238  5.999999999999999e-62  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_013216  Dtox_4198  two component transcriptional regulator, winged helix family  51.33 
 
 
226 aa  237  9e-62  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1055  DNA-binding response regulator SrrA  50.43 
 
 
241 aa  236  2e-61  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  50 
 
 
231 aa  229  2e-59  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_010001  Cphy_0154  two component transcriptional regulator  45.92 
 
 
238 aa  229  3e-59  Clostridium phytofermentans ISDg  Bacteria  normal  0.644268  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  51.08 
 
 
232 aa  229  3e-59  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  51.53 
 
 
225 aa  225  5.0000000000000005e-58  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1658  two component transcriptional regulator, winged helix family  50.88 
 
 
230 aa  224  8e-58  Clostridium cellulolyticum H10  Bacteria  normal  0.515101  n/a   
 
 
-
 
NC_011830  Dhaf_2286  two component transcriptional regulator, winged helix family  48.02 
 
 
231 aa  224  1e-57  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000188753  n/a   
 
 
-
 
NC_011830  Dhaf_1756  two component transcriptional regulator, winged helix family  46.22 
 
 
230 aa  222  4e-57  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.769657  n/a   
 
 
-
 
NC_011831  Cagg_0243  two component transcriptional regulator, winged helix family  50.22 
 
 
235 aa  221  6e-57  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0646165  normal 
 
 
-
 
NC_010320  Teth514_0439  two component transcriptional regulator  49.78 
 
 
225 aa  220  1.9999999999999999e-56  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000223011  n/a   
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  47.56 
 
 
236 aa  219  1.9999999999999999e-56  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0246  two component transcriptional regulator, winged helix family  47.14 
 
 
225 aa  219  3.9999999999999997e-56  Clostridium cellulolyticum H10  Bacteria  normal  0.0272164  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  48.28 
 
 
235 aa  218  5e-56  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2811  DNA-binding response regulator  47.81 
 
 
228 aa  217  1e-55  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2497  DNA-binding response regulator  47.81 
 
 
228 aa  217  1e-55  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3305  DNA-binding response regulator BaeR  46.35 
 
 
232 aa  215  4e-55  Colwellia psychrerythraea 34H  Bacteria  normal  0.304306  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  46.7 
 
 
229 aa  214  5.9999999999999996e-55  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_010180  BcerKBAB4_5511  two component transcriptional regulator  49.78 
 
 
236 aa  214  7e-55  Bacillus weihenstephanensis KBAB4  Bacteria  normal  normal  0.567595 
 
 
-
 
NC_009767  Rcas_0353  two component transcriptional regulator  47.77 
 
 
230 aa  214  9.999999999999999e-55  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.683455 
 
 
-
 
NC_008541  Arth_1441  two component transcriptional regulator  48.23 
 
 
247 aa  214  9.999999999999999e-55  Arthrobacter sp. FB24  Bacteria  normal  0.167327  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  47.53 
 
 
235 aa  213  9.999999999999999e-55  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  47.53 
 
 
235 aa  213  1.9999999999999998e-54  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_009972  Haur_4663  two component transcriptional regulator  48.46 
 
 
232 aa  213  2.9999999999999995e-54  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1220  two component transcriptional regulator, winged helix family  48.29 
 
 
233 aa  212  3.9999999999999995e-54  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.00991602 
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  47.14 
 
 
229 aa  212  3.9999999999999995e-54  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_010320  Teth514_2216  two component transcriptional regulator  46.93 
 
 
224 aa  212  3.9999999999999995e-54  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2180  DNA-binding response regulator  48 
 
 
223 aa  211  7e-54  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0299585  n/a   
 
 
-
 
NC_008262  CPR_1891  DNA-binding response regulator  48 
 
 
223 aa  211  9e-54  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  46.88 
 
 
233 aa  211  1e-53  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  48.66 
 
 
230 aa  211  1e-53  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  47.09 
 
 
235 aa  211  1e-53  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  46.22 
 
 
232 aa  210  1e-53  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  46.88 
 
 
233 aa  209  2e-53  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  46.88 
 
 
233 aa  209  2e-53  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_009972  Haur_4156  two component transcriptional regulator  46.29 
 
 
232 aa  209  2e-53  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.0000307056  n/a   
 
 
-
 
NC_007948  Bpro_0543  two component transcriptional regulator  45.41 
 
 
241 aa  209  3e-53  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_00330  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  48.23 
 
 
240 aa  209  3e-53  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.00972196  normal 
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  48.03 
 
 
235 aa  209  4e-53  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_011830  Dhaf_1367  two component transcriptional regulator, winged helix family  48.91 
 
 
230 aa  208  5e-53  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000177207  n/a   
 
 
-
 
NC_013204  Elen_0258  two component transcriptional regulator, winged helix family  48.23 
 
 
236 aa  208  6e-53  Eggerthella lenta DSM 2243  Bacteria  normal  0.606292  normal 
 
 
-
 
NC_013216  Dtox_2915  two component transcriptional regulator, winged helix family  45.58 
 
 
225 aa  207  8e-53  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.892207  normal  0.300351 
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  47.79 
 
 
236 aa  207  9e-53  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_010184  BcerKBAB4_3288  two component transcriptional regulator  46.88 
 
 
225 aa  207  9e-53  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0366247  n/a   
 
 
-
 
NC_009674  Bcer98_2250  two component transcriptional regulator  47.32 
 
 
225 aa  207  1e-52  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00000295266  n/a   
 
 
-
 
NC_004116  SAG0719  DNA-binding response regulator  46.96 
 
 
236 aa  206  2e-52  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.0951718  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  49.12 
 
 
239 aa  207  2e-52  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_008530  LGAS_0064  DNA-binding response regulator  46.7 
 
 
235 aa  206  2e-52  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.611294  normal 
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  46.93 
 
 
239 aa  206  3e-52  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_011772  BCG9842_B1606  DNA-binding response regulator  46.43 
 
 
225 aa  206  3e-52  Bacillus cereus G9842  Bacteria  hitchhiker  0.00543423  hitchhiker  0.0000000112462 
 
 
-
 
NC_011725  BCB4264_A3709  DNA-binding response regulator  46.43 
 
 
225 aa  206  3e-52  Bacillus cereus B4264  Bacteria  unclonable  0.0000227696  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  46.93 
 
 
239 aa  206  3e-52  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_009380  Strop_1197  response regulator receiver  43.97 
 
 
230 aa  206  3e-52  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
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