More than 300 homologs were found in PanDaTox collection
for query gene DehaBAV1_0258 on replicon NC_009455
Organism: Dehalococcoides sp. BAV1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  93.73 
 
 
526 aa  1036    Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  100 
 
 
526 aa  1095    Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  96.58 
 
 
526 aa  1060    Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  51.98 
 
 
458 aa  511  1e-144  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  50.75 
 
 
485 aa  502  1e-141  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  50.78 
 
 
481 aa  496  1e-139  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  46.57 
 
 
518 aa  479  1e-134  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  41.71 
 
 
569 aa  430  1e-119  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  41.41 
 
 
569 aa  429  1e-119  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  41.65 
 
 
568 aa  421  1e-116  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  39.69 
 
 
570 aa  416  9.999999999999999e-116  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  40 
 
 
570 aa  417  9.999999999999999e-116  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  40.94 
 
 
566 aa  416  9.999999999999999e-116  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  40.98 
 
 
564 aa  412  1e-114  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  39.72 
 
 
566 aa  412  1e-114  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  41.92 
 
 
566 aa  411  1e-113  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  40.58 
 
 
567 aa  407  1.0000000000000001e-112  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  40.14 
 
 
566 aa  405  1.0000000000000001e-112  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  43.42 
 
 
488 aa  406  1.0000000000000001e-112  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  43.03 
 
 
488 aa  405  1e-111  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  44.34 
 
 
488 aa  403  1e-111  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  41.37 
 
 
517 aa  403  1e-111  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  40.65 
 
 
546 aa  403  1e-111  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  40.24 
 
 
566 aa  399  9.999999999999999e-111  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  40.26 
 
 
514 aa  388  1e-106  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  39.3 
 
 
572 aa  383  1e-105  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  37.17 
 
 
560 aa  377  1e-103  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  37.7 
 
 
558 aa  376  1e-103  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  37.52 
 
 
585 aa  375  1e-103  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  37.21 
 
 
560 aa  377  1e-103  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  38.96 
 
 
572 aa  378  1e-103  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  37.52 
 
 
585 aa  375  1e-103  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  38.45 
 
 
470 aa  372  1e-102  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  38.23 
 
 
568 aa  370  1e-101  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  36.81 
 
 
577 aa  371  1e-101  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  37.82 
 
 
572 aa  370  1e-101  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  38.72 
 
 
572 aa  367  1e-100  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  38.61 
 
 
572 aa  367  1e-100  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  37.78 
 
 
597 aa  364  2e-99  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  37.67 
 
 
570 aa  364  2e-99  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  38.14 
 
 
572 aa  364  2e-99  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  36.01 
 
 
584 aa  363  3e-99  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  38.53 
 
 
597 aa  364  3e-99  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  36.36 
 
 
559 aa  363  6e-99  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  36.63 
 
 
596 aa  360  2e-98  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  36.12 
 
 
595 aa  360  4e-98  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  37.83 
 
 
567 aa  359  6e-98  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1276  nickel-dependent hydrogenase large subunit  38.01 
 
 
554 aa  359  7e-98  Eggerthella lenta DSM 2243  Bacteria  normal  0.438048  normal 
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  36.92 
 
 
583 aa  358  9.999999999999999e-98  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  38.05 
 
 
567 aa  358  9.999999999999999e-98  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_013165  Shel_12910  Ni,Fe-hydrogenase I large subunit  38.03 
 
 
545 aa  358  9.999999999999999e-98  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.343906  normal  0.388227 
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  38.16 
 
 
567 aa  357  1.9999999999999998e-97  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  37.09 
 
 
597 aa  356  5.999999999999999e-97  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  35.45 
 
 
597 aa  355  8.999999999999999e-97  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  37.35 
 
 
573 aa  355  1e-96  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  36.77 
 
 
573 aa  354  2e-96  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  37.33 
 
 
596 aa  354  2e-96  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_010424  Daud_1940  hydrogen:quinone oxidoreductase  38.13 
 
 
475 aa  354  2e-96  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  36.44 
 
 
570 aa  354  2.9999999999999997e-96  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  38.23 
 
 
571 aa  353  5e-96  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  37.89 
 
 
567 aa  353  5.9999999999999994e-96  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  37.89 
 
 
567 aa  353  5.9999999999999994e-96  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  36.77 
 
 
573 aa  353  5.9999999999999994e-96  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  37.89 
 
 
567 aa  352  7e-96  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  37.83 
 
 
568 aa  352  7e-96  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_08540  Ni,Fe-hydrogenase I large subunit  37.59 
 
 
548 aa  351  1e-95  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.481337 
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  37.83 
 
 
567 aa  352  1e-95  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  36.87 
 
 
600 aa  352  1e-95  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  35.12 
 
 
559 aa  352  1e-95  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  36.87 
 
 
600 aa  351  2e-95  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  36.68 
 
 
596 aa  351  2e-95  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  36.87 
 
 
600 aa  351  2e-95  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  36.87 
 
 
600 aa  351  2e-95  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_009802  CCC13826_0100  aminodeoxychorismate lyase  37.11 
 
 
572 aa  351  2e-95  Campylobacter concisus 13826  Bacteria  normal  0.0667384  n/a   
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  36.87 
 
 
600 aa  351  2e-95  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  37.48 
 
 
567 aa  350  4e-95  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_50580  Membrane bound nickel-dependent hydrogenase, large subunit, HoxG  36.03 
 
 
602 aa  350  5e-95  Azotobacter vinelandii DJ  Bacteria  normal  0.980558  n/a   
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  34.76 
 
 
559 aa  349  6e-95  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_2915  nickel-dependent hydrogenase large subunit  38.41 
 
 
571 aa  349  9e-95  Geobacter sp. M21  Bacteria  n/a    normal  0.289083 
 
 
-
 
NC_012039  Cla_0713  Ni/Fe-hydrogenase, large subunit  37.5 
 
 
571 aa  348  1e-94  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  37.13 
 
 
567 aa  348  1e-94  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_011138  MADE_00347  Ni-Fe hydrogenase large chain  34.78 
 
 
625 aa  348  2e-94  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  35.82 
 
 
563 aa  347  3e-94  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  36.89 
 
 
567 aa  347  4e-94  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  36.63 
 
 
598 aa  346  5e-94  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_1282  quinone-reactive Ni/Fe-hydrogenase, large subunit  36.51 
 
 
571 aa  346  7e-94  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00216082  n/a   
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  38.7 
 
 
567 aa  345  1e-93  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  38.7 
 
 
567 aa  345  1e-93  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  38.7 
 
 
567 aa  345  1e-93  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_003912  CJE1402  quinone-reactive Ni/Fe-hydrogenase, large subunit  36.51 
 
 
571 aa  345  2e-93  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  36.71 
 
 
596 aa  344  2e-93  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  38.7 
 
 
567 aa  345  2e-93  Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  36.18 
 
 
596 aa  343  2.9999999999999997e-93  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  36.18 
 
 
596 aa  343  2.9999999999999997e-93  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  35.71 
 
 
578 aa  343  5.999999999999999e-93  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0459  quinone-reactive Ni/Fe-hydrogenase, large subunit  36.16 
 
 
571 aa  341  2e-92  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000643457  n/a   
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  35.15 
 
 
598 aa  339  7e-92  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_007519  Dde_3756  periplasmic (NiFe) hydrogenase, large subunit, isozyme 2  34.48 
 
 
554 aa  337  1.9999999999999998e-91  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  35.25 
 
 
597 aa  337  2.9999999999999997e-91  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  37.02 
 
 
568 aa  335  9e-91  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
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