More than 300 homologs were found in PanDaTox collection
for query gene Dbac_0420 on replicon NC_013173
Organism: Desulfomicrobium baculatum DSM 4028



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013173  Dbac_0420  response regulator receiver protein  100 
 
 
172 aa  354  3.9999999999999996e-97  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.370245  n/a   
 
 
-
 
NC_007974  Rmet_3967  putative response regulator of a two-component system  52.11 
 
 
335 aa  160  1e-38  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000645274  normal  0.0110626 
 
 
-
 
NC_008463  PA14_16500  two-component response regulator  54.41 
 
 
347 aa  159  2e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.67066  normal 
 
 
-
 
NC_007348  Reut_B3647  response regulator receiver modulated diguanylate cyclase  50.63 
 
 
359 aa  159  3e-38  Ralstonia eutropha JMP134  Bacteria  normal  0.745021  n/a   
 
 
-
 
NC_009656  PSPA7_1436  two-component response regulator  54.48 
 
 
327 aa  158  4e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  0.462819  n/a   
 
 
-
 
NC_010623  Bphy_5389  response regulator receiver modulated diguanylate cyclase  50.72 
 
 
372 aa  155  3e-37  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3956  response regulator receiver modulated diguanylate cyclase  54.74 
 
 
357 aa  155  4e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  0.892783  normal  0.485051 
 
 
-
 
NC_008391  Bamb_3449  diguanylate cyclase  54.01 
 
 
357 aa  154  8e-37  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.103484 
 
 
-
 
NC_007511  Bcep18194_B2018  response regulator receiver modulated diguanylate cyclase  51.05 
 
 
355 aa  152  2e-36  Burkholderia sp. 383  Bacteria  normal  0.414914  normal  0.602726 
 
 
-
 
NC_010515  Bcenmc03_3470  response regulator receiver modulated diguanylate cyclase  51.41 
 
 
353 aa  151  5e-36  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.843913  normal  0.949354 
 
 
-
 
NC_013161  Cyan8802_3802  response regulator receiver modulated serine phosphatase  52.94 
 
 
393 aa  150  5.9999999999999996e-36  Cyanothece sp. PCC 8802  Bacteria  normal  0.477794  normal 
 
 
-
 
NC_011726  PCC8801_3753  response regulator receiver modulated serine phosphatase  52.94 
 
 
393 aa  150  5.9999999999999996e-36  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_1499  response regulator/GGDEF domain protein  50.36 
 
 
334 aa  150  7e-36  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3973  response regulator receiver modulated diguanylate cyclase  49.3 
 
 
362 aa  150  7e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  0.415221  normal 
 
 
-
 
NC_010501  PputW619_4124  response regulator receiver modulated diguanylate cyclase  49.64 
 
 
334 aa  150  1e-35  Pseudomonas putida W619  Bacteria  normal  0.113929  normal 
 
 
-
 
NC_008061  Bcen_4311  diguanylate cyclase  50.7 
 
 
354 aa  149  2e-35  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.750548  n/a   
 
 
-
 
NC_008543  Bcen2424_4055  diguanylate cyclase  50.7 
 
 
354 aa  149  2e-35  Burkholderia cenocepacia HI2424  Bacteria  normal  0.33875  normal 
 
 
-
 
NC_007005  Psyr_1309  GGDEF  49.64 
 
 
334 aa  149  3e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00365402 
 
 
-
 
NC_002947  PP_1494  response regulator/GGDEF domain-containing protein  48.92 
 
 
335 aa  147  5e-35  Pseudomonas putida KT2440  Bacteria  normal  normal  0.799611 
 
 
-
 
NC_010086  Bmul_4535  response regulator receiver modulated diguanylate cyclase  48.97 
 
 
345 aa  147  5e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0387275  normal  0.636684 
 
 
-
 
NC_010322  PputGB1_1099  response regulator receiver modulated diguanylate cyclase  48.92 
 
 
334 aa  147  5e-35  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0833  response regulator  55.73 
 
 
389 aa  147  6e-35  Methylococcus capsulatus str. Bath  Bacteria  normal  0.106584  n/a   
 
 
-
 
NC_009512  Pput_4228  response regulator receiver modulated diguanylate cyclase  48.92 
 
 
334 aa  147  9e-35  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1058  response regulator receiver modulated diguanylate cyclase  48.2 
 
 
333 aa  145  3e-34  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0856452  normal  0.699737 
 
 
-
 
NC_009078  BURPS1106A_A2544  response regulator/sensor histidine kinase  49.24 
 
 
365 aa  140  9.999999999999999e-33  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0216  sensor histidine kinase/response regulator  49.24 
 
 
364 aa  140  9.999999999999999e-33  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0969  sensor histidine kinase/response regulator  49.24 
 
 
364 aa  140  9.999999999999999e-33  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1593  response regulator/sensor histidine kinase  49.24 
 
 
364 aa  140  9.999999999999999e-33  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0500  sensor histidine kinase/response regulator  49.24 
 
 
364 aa  140  9.999999999999999e-33  Burkholderia thailandensis E264  Bacteria  normal  0.823251  n/a   
 
 
-
 
NC_010086  Bmul_4947  response regulator receiver sensor signal transduction histidine kinase  50 
 
 
377 aa  140  9.999999999999999e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A2689  response regulator/sensor histidine kinase  49.24 
 
 
365 aa  140  9.999999999999999e-33  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0252  response regulator/sensor histidine kinase  49.24 
 
 
365 aa  140  9.999999999999999e-33  Burkholderia mallei NCTC 10247  Bacteria  normal  0.549911  n/a   
 
 
-
 
NC_008784  BMASAVP1_1396  response regulator/sensor histidine kinase  49.24 
 
 
365 aa  140  9.999999999999999e-33  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3678  response regulator receiver sensor signal transduction histidine kinase  49.24 
 
 
363 aa  137  4.999999999999999e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.4977  normal 
 
 
-
 
NC_007511  Bcep18194_B2309  response regulator receiver sensor signal transduction histidine kinase  49.24 
 
 
377 aa  137  8.999999999999999e-32  Burkholderia sp. 383  Bacteria  normal  normal  0.556346 
 
 
-
 
NC_010515  Bcenmc03_3738  response regulator receiver sensor signal transduction histidine kinase  49.24 
 
 
363 aa  137  8.999999999999999e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.524065  normal  0.172918 
 
 
-
 
NC_008061  Bcen_4578  response regulator receiver sensor signal transduction histidine kinase  49.24 
 
 
377 aa  137  1e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5512  response regulator receiver sensor signal transduction histidine kinase  49.24 
 
 
377 aa  137  1e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.3738  normal 
 
 
-
 
NC_008543  Bcen2424_3785  response regulator receiver sensor signal transduction histidine kinase  49.24 
 
 
377 aa  137  1e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.76138  normal  0.119263 
 
 
-
 
NC_011729  PCC7424_1522  response regulator receiver modulated serine phosphatase  52.07 
 
 
378 aa  131  5e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_002977  MCA3105  DNA-binding response regulator PhoB  33.33 
 
 
232 aa  73.9  0.000000000001  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1716  phosphate regulon transcriptional regulatory protein  29.1 
 
 
248 aa  73.6  0.000000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.00444869  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0473  phosphate regulon transcriptional regulatory protein PhoB  29.1 
 
 
248 aa  73.6  0.000000000001  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  33.08 
 
 
231 aa  73.2  0.000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  34.27 
 
 
310 aa  73.2  0.000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  30.77 
 
 
229 aa  72.4  0.000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  32.8 
 
 
231 aa  72.4  0.000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  33.33 
 
 
1341 aa  71.6  0.000000000006  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  36.15 
 
 
229 aa  70.5  0.00000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  32.59 
 
 
309 aa  69.7  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_013422  Hneap_1150  response regulator receiver modulated diguanylate cyclase  30.08 
 
 
547 aa  69.7  0.00000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  31.36 
 
 
441 aa  67.8  0.00000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_3122  two component transcriptional regulator, winged helix family  34.45 
 
 
235 aa  67.8  0.00000000007  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  37.12 
 
 
234 aa  67.8  0.00000000008  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  33.04 
 
 
229 aa  67.8  0.00000000008  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_011126  HY04AAS1_1268  two component transcriptional regulator, winged helix family  30.33 
 
 
229 aa  66.6  0.0000000001  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  33.05 
 
 
234 aa  67  0.0000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  33.91 
 
 
229 aa  67.4  0.0000000001  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000702519  hitchhiker  0.00000106408 
 
 
-
 
NC_011138  MADE_03440  putative DNA-binding response regulator PhoB  34.48 
 
 
229 aa  66.2  0.0000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1573  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region  37.08 
 
 
373 aa  66.6  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0323  two component transcriptional regulator  34.78 
 
 
227 aa  66.2  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  30.77 
 
 
328 aa  65.9  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1391  response regulator receiver sensor signal transduction histidine kinase  28.67 
 
 
373 aa  66.6  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.540189  normal 
 
 
-
 
NC_010681  Bphyt_1312  two component transcriptional regulator, winged helix family  33.06 
 
 
232 aa  66.2  0.0000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.1865 
 
 
-
 
NC_008345  Sfri_3901  two component transcriptional regulator, winged helix family protein  33.06 
 
 
225 aa  66.2  0.0000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  32.17 
 
 
229 aa  65.9  0.0000000003  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  31.16 
 
 
236 aa  65.5  0.0000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_003295  RSc1534  phosphate regulon two-component response regulator transcription regulator protein  28.28 
 
 
237 aa  65.9  0.0000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.286797  normal 
 
 
-
 
NC_012856  Rpic12D_1713  two component transcriptional regulator PhoB, winged helix family  28.28 
 
 
237 aa  65.5  0.0000000003  Ralstonia pickettii 12D  Bacteria  normal  0.0484795  normal  0.810471 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  34.62 
 
 
308 aa  65.9  0.0000000003  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  33.33 
 
 
224 aa  65.5  0.0000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_2021  two component transcriptional regulator, winged helix family  28.28 
 
 
237 aa  65.5  0.0000000003  Ralstonia pickettii 12J  Bacteria  normal  0.198844  normal 
 
 
-
 
NC_007951  Bxe_A3248  two component transcriptional regulator  33.06 
 
 
232 aa  65.9  0.0000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.743  normal 
 
 
-
 
NC_008700  Sama_1074  response regulator receiver protein  33.91 
 
 
229 aa  65.5  0.0000000003  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000246777  normal  0.491091 
 
 
-
 
NC_007955  Mbur_2185  response regulator receiver  33.59 
 
 
356 aa  65.9  0.0000000003  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  34.62 
 
 
308 aa  65.9  0.0000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_0227  two component transcriptional regulator PhoB, winged helix family  31.4 
 
 
236 aa  65.9  0.0000000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2768  two component transcriptional regulator, winged helix family protein  33.91 
 
 
229 aa  65.5  0.0000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0176064  n/a   
 
 
-
 
NC_011884  Cyan7425_0749  response regulator receiver protein  29.23 
 
 
406 aa  65.5  0.0000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.893418  normal  0.0890519 
 
 
-
 
NC_011830  Dhaf_1756  two component transcriptional regulator, winged helix family  31.06 
 
 
230 aa  65.1  0.0000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.769657  n/a   
 
 
-
 
NC_007347  Reut_A2162  phosphate regulon transcriptional regulatory protein phoB  27.59 
 
 
235 aa  65.1  0.0000000004  Ralstonia eutropha JMP134  Bacteria  normal  0.308703  n/a   
 
 
-
 
NC_008740  Maqu_3596  two component transcriptional regulator  31.9 
 
 
230 aa  65.5  0.0000000004  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  33.04 
 
 
241 aa  65.5  0.0000000004  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
NC_008599  CFF8240_0763  DNA-binding response regulator  29.46 
 
 
224 aa  65.1  0.0000000004  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.00370439  n/a   
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  32.2 
 
 
237 aa  65.1  0.0000000005  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4781  DNA-binding response regulator  32.5 
 
 
229 aa  65.1  0.0000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2180  two component transcriptional regulator  27.59 
 
 
235 aa  65.1  0.0000000005  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0753297 
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  35.11 
 
 
359 aa  65.1  0.0000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1151  two component transcriptional regulator, winged helix family  31.09 
 
 
243 aa  64.7  0.0000000006  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2981  two component transcriptional regulator PhoB, winged helix family  33.04 
 
 
229 aa  64.7  0.0000000006  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000220801  hitchhiker  0.00121997 
 
 
-
 
NC_004347  SO_1558  phosphate regulon response regulator PhoB  33.04 
 
 
239 aa  64.7  0.0000000006  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1403  two component transcriptional regulator  33.04 
 
 
229 aa  64.7  0.0000000006  Shewanella baltica OS195  Bacteria  hitchhiker  0.00109837  normal  0.0219543 
 
 
-
 
NC_009052  Sbal_1378  two component transcriptional regulator  33.04 
 
 
229 aa  64.7  0.0000000006  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000291119  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  30.95 
 
 
232 aa  64.7  0.0000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1434  DNA-binding response regulator PhoB  31.09 
 
 
243 aa  64.7  0.0000000006  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1296  two component transcriptional regulator  33.04 
 
 
229 aa  64.7  0.0000000006  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000460678  n/a   
 
 
-
 
NC_008321  Shewmr4_2709  two component transcriptional regulator  33.04 
 
 
229 aa  64.7  0.0000000006  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000407229  decreased coverage  0.000000263688 
 
 
-
 
NC_008322  Shewmr7_2777  two component transcriptional regulator  33.04 
 
 
229 aa  64.7  0.0000000006  Shewanella sp. MR-7  Bacteria  unclonable  0.000000628627  decreased coverage  0.000208697 
 
 
-
 
NC_009523  RoseRS_2694  putative PAS/PAC sensor protein  29.5 
 
 
969 aa  64.7  0.0000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.0176534  normal 
 
 
-
 
NC_008577  Shewana3_2879  two component transcriptional regulator  33.04 
 
 
229 aa  64.7  0.0000000006  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000143261  hitchhiker  0.00000615281 
 
 
-
 
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