| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_16500 |
|---|
| Symbol | wspR |
|---|
| ID | 4384651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 1413158 |
|---|
| End bp | 1414201 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639323874 |
|---|
| Product | two-component response regulator |
|---|
| Protein accession | YP_789462 |
|---|
| Protein GI | 116051699 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.67066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAACC CTCATGAGAG CAAGACCGAC CTGGGCGCCC CTCTGGACGG CGCGGTCATG
GTACTGCTTG TCGATGATCA GGCCATGATC GGAGAGGCTG TGCGTCGCTC GCTGGCGAGC
GAGGCGGGCA TCGACTTCCA CTTCTGTTCC GATCCGCAGC AGGCGGTGGC GGTGGCCAAC
CAGATCAAGC CGACGGTGAT CCTCCAGGAC CTGGTGATGC CCGGCGTCGA CGGCCTCACG
CTGCTCGCCG CCTACCGCGG CAACCCGGCG ACCCGCGACA TCCCGATCAT CGTCCTGTCG
ACCAAGGAAG AGCCGACGGT GAAGAGCGCG GCGTTCGCCG CCGGCGCCAA CGACTACCTG
GTCAAGCTGC CGGACGCCAT CGAGCTGGTG GCGCGGATCC GCTACCACTC GCGTTCGTAC
ATCGCCCTGC AGCAACGCGA CGAGGCCTAT CGGGCGCTGC GCGAGAGCCA GCAGCAGTTG
CTGGAGACCA ACCTGGTGCT GCAGCGGCTG ATGAACTCCG ACGGCCTGAC CGGGCTCTCC
AACCGTCGTC ACTTCGACGA ATACCTGGAG ATGGAGTGGC GCCGCTCGCT GCGCGAGCAG
TCGCAACTGT CGCTGCTGAT GATCGACGTG GACTATTTCA AGAGCTACAA CGACACCTTC
GGCCACGTCG CCGGCGACGA GGCCCTGCGC CAGGTCGCCG GGGCCATCCG CGAGGGCTGC
AGTCGCTCCT CGGACCTGGC GGCGCGCTAT GGCGGCGAGG AGTTCGCCAT GGTCCTGCCG
GGCACCTCGC CGGGCGGCGC GCGGCTGCTG GCGGAAAAGG TCCGGCGTAC GGTGGAGAGC
CTGCAGATCA GCCACGACCA GCCACGCCCG GGCTCGTACC TGACCGTCAG CATCGGCGTC
AGCACCCTGG TGCCGGGCGG CGGCGGACAG ACCTTCCGGG TTCTCATCGA GATGGCCGAC
CAGGCGCTCT ACCAGGCCAA GAACAATGGC CGCAACCAGG TTGGCCTGAT GGAACAGCCG
GTGCCGCCAG CCCCGGCGGG CTGA
|
|---|
| Protein sequence | MHNPHESKTD LGAPLDGAVM VLLVDDQAMI GEAVRRSLAS EAGIDFHFCS DPQQAVAVAN
QIKPTVILQD LVMPGVDGLT LLAAYRGNPA TRDIPIIVLS TKEEPTVKSA AFAAGANDYL
VKLPDAIELV ARIRYHSRSY IALQQRDEAY RALRESQQQL LETNLVLQRL MNSDGLTGLS
NRRHFDEYLE MEWRRSLREQ SQLSLLMIDV DYFKSYNDTF GHVAGDEALR QVAGAIREGC
SRSSDLAARY GGEEFAMVLP GTSPGGARLL AEKVRRTVES LQISHDQPRP GSYLTVSIGV
STLVPGGGGQ TFRVLIEMAD QALYQAKNNG RNQVGLMEQP VPPAPAG
|
|---|
| |