Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1074 |
Symbol | |
ID | 4603326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1300792 |
End bp | 1301481 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639780421 |
Product | response regulator receiver protein |
Protein accession | YP_926951 |
Protein GI | 119774211 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR02154] phosphate regulon transcriptional regulatory protein PhoB |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000246777 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.491091 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCAA GGATTTTGAT TGTTGAAGAT GAGTTGGCCA TCCGCGAGAT GCTGACATTC GTGATGGAAC AACACGGTTT CACGACCTCG GTTGCCGAAG ATTTTGACTC GGCTCTTGGG CAGCTTCAGG AACCCTACCC AGATCTCATC CTGCTGGACT GGATGTTTCC GGGCGGCAGT GGCATTCAAC TTGCCAAACG CCTCAAGCAA GACGAGTTTA CCCGCCAGAT CCCGGTCATC ATGCTCACCG CCCGTGGTGA GGAAGAAGAC AAGGTCAAGG GCCTGGAAGT GGGGGCCGAC GACTATATTA CCAAGCCTTT CTCCCCCAAG GAGCTGGTGG CCCGTATCAA GGCTGTACTG CGCCGCGCAG CGCCAACCCG CCTTGAAGAA ACAATCGATG TGCAGGGGTT GACCCTGGAT CCGGTAAGCC ACCGAGTCAC AGCCGGTGAT ACAGTGCTGG ATATGGGACC GACCGAGTTT CGTCTGCTGC ATTTCTTTAT GACTCACCCC GAGCGTGTTT ACAGCCGTGA ACAGCTGCTG GATAACGTCT GGGGCACCAA TGTGTACGTA GAAGACAGAA CCGTAGACGT GCACATTCGT CGTTTGCGCA AGGCCGTTGA GCCTTCGGGG CATGACCGCC TCATTCAAAC CGTCCGCGGC GCAGGATACC GTTTTTCCAC TCGGGTTTAG
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Protein sequence | MTARILIVED ELAIREMLTF VMEQHGFTTS VAEDFDSALG QLQEPYPDLI LLDWMFPGGS GIQLAKRLKQ DEFTRQIPVI MLTARGEEED KVKGLEVGAD DYITKPFSPK ELVARIKAVL RRAAPTRLEE TIDVQGLTLD PVSHRVTAGD TVLDMGPTEF RLLHFFMTHP ERVYSREQLL DNVWGTNVYV EDRTVDVHIR RLRKAVEPSG HDRLIQTVRG AGYRFSTRV
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