| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2768 |
|---|
| Symbol | |
|---|
| ID | 4279674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3328540 |
|---|
| End bp | 3329229 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638135587 |
|---|
| Product | two component transcriptional regulator, winged helix family protein |
|---|
| Protein accession | YP_751447 |
|---|
| Protein GI | 114563933 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02154] phosphate regulon transcriptional regulatory protein PhoB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0176064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCTA GGATATTAAT AGTAGAAGAT GAATCAGCAA TCCGTGAGAT GCTGACATTT
GTGATGGATC AACATGGTTT TACGACAGCT GCAGCTGAAG ATTTTGATTC AGCAATTGAG
TTGCTTAAAG AGCCATACCC TGACTTAATT TTATTGGATT GGATGTTCCC TGGTGGTAGT
GGCATCCAAT TAGCTAAACG TTTAAAGCAA GATGAATTTA CTCGTCAGAT CCCCATTATT
ATGCTGACAG CACGTGGGGA GGAGGAAGAT AAAGTCAAAG GCCTTGAAGT GGGCGCTGAT
GACTATATAA CTAAACCTTT TTCACCTAAA GAACTCGTCG CACGAATTAA AGCCGTTTTA
CGCAGAAGCG CACCTACGCG ATTAGAAGAA ACCATTGATG TGCAAGGATT ACAACTCGAC
CCTGTGAGTC ACAGAGTGAC CGTTGGTGAC GCCGTGCTCG ATATGGGACC GACAGAGTTT
CGCTTGTTGC ATTTCTTTAT GACTCATCCT GAGCGAGTTT ACAGCCGTGA GCAGTTACTC
GATAACGTTT GGGGCACCAA TGTGTATGTT GAAGATCGAA CTGTCGATGT GCACATCAGA
CGTTTACGAA AAGCCGTAGA AGAGGGTGGA CATGATAAAT TGATCCAAAC TGTTCGTGGT
GCTGGTTATC GATTTTCAAC CAGAATGTAA
|
|---|
| Protein sequence | MTARILIVED ESAIREMLTF VMDQHGFTTA AAEDFDSAIE LLKEPYPDLI LLDWMFPGGS
GIQLAKRLKQ DEFTRQIPII MLTARGEEED KVKGLEVGAD DYITKPFSPK ELVARIKAVL
RRSAPTRLEE TIDVQGLQLD PVSHRVTVGD AVLDMGPTEF RLLHFFMTHP ERVYSREQLL
DNVWGTNVYV EDRTVDVHIR RLRKAVEEGG HDKLIQTVRG AGYRFSTRM
|
|---|
| |