More than 300 homologs were found in PanDaTox collection
for query gene Daro_3349 on replicon NC_007298
Organism: Dechloromonas aromatica RCB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007298  Daro_3349  response regulator receiver  100 
 
 
126 aa  248  2e-65  Dechloromonas aromatica RCB  Bacteria  normal  0.732047  normal  0.457189 
 
 
-
 
NC_011662  Tmz1t_3848  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  46.55 
 
 
703 aa  101  3e-21  Thauera sp. MZ1T  Bacteria  normal  0.343403  n/a   
 
 
-
 
NC_007404  Tbd_1269  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.15 
 
 
705 aa  93.2  1e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.54 
 
 
704 aa  85.5  2e-16  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00325078 
 
 
-
 
NC_011146  Gbem_1506  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.54 
 
 
704 aa  85.5  2e-16  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3328  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.33 
 
 
711 aa  85.1  3e-16  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3542  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.48 
 
 
590 aa  78.2  0.00000000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2168  two component transcriptional regulator, winged helix family  39.66 
 
 
247 aa  75.9  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.222815 
 
 
-
 
NC_009523  RoseRS_4619  two component transcriptional regulator  39.81 
 
 
245 aa  75.5  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0926269 
 
 
-
 
NC_012669  Bcav_1240  two component transcriptional regulator, winged helix family  36.97 
 
 
227 aa  75.1  0.0000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_009380  Strop_0967  response regulator receiver  37.93 
 
 
229 aa  73.9  0.0000000000006  Salinispora tropica CNB-440  Bacteria  normal  0.359698  normal  0.873584 
 
 
-
 
NC_009953  Sare_0904  two component transcriptional regulator  37.93 
 
 
229 aa  73.9  0.0000000000007  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0335314 
 
 
-
 
NC_008789  Hhal_0311  PAS/PAC sensor hybrid histidine kinase  38.52 
 
 
639 aa  73.6  0.0000000000008  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  34.4 
 
 
577 aa  73.9  0.0000000000008  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  36.19 
 
 
734 aa  72  0.000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_011884  Cyan7425_2205  multi-sensor hybrid histidine kinase  39.81 
 
 
887 aa  72  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.188088 
 
 
-
 
NC_013501  Rmar_1501  response regulator receiver protein  34.92 
 
 
132 aa  72  0.000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.153095  n/a   
 
 
-
 
NC_009767  Rcas_0421  two component transcriptional regulator  38.89 
 
 
245 aa  72  0.000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0518956  normal 
 
 
-
 
NC_008789  Hhal_0361  PAS/PAC sensor hybrid histidine kinase  41.38 
 
 
871 aa  71.6  0.000000000003  Halorhodospira halophila SL1  Bacteria  normal  0.363033  n/a   
 
 
-
 
NC_007333  Tfu_2496  response regulator receiver  38.79 
 
 
225 aa  71.2  0.000000000004  Thermobifida fusca YX  Bacteria  normal  0.491467  n/a   
 
 
-
 
NC_013501  Rmar_2360  response regulator receiver protein  35.25 
 
 
523 aa  71.2  0.000000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2841  response regulator receiver modulated GAF sensor protein  32.5 
 
 
308 aa  71.2  0.000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.585847 
 
 
-
 
NC_013510  Tcur_4043  two component transcriptional regulator, winged helix family  38.79 
 
 
225 aa  70.9  0.000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  0.728877  n/a   
 
 
-
 
NC_013739  Cwoe_5142  two component transcriptional regulator, winged helix family  37.7 
 
 
224 aa  70.9  0.000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.555028  normal 
 
 
-
 
NC_007760  Adeh_0606  response regulator receiver domain-containing protein  32.2 
 
 
123 aa  70.9  0.000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02505  putative response regulator  35.83 
 
 
306 aa  70.9  0.000000000007  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4036  two component transcriptional regulator  37.04 
 
 
248 aa  70.5  0.000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0902  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.28 
 
 
718 aa  70.1  0.000000000009  Pelobacter propionicus DSM 2379  Bacteria  normal  0.651526  n/a   
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  38.84 
 
 
372 aa  70.1  0.000000000009  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0057  histidine kinase  31.71 
 
 
588 aa  70.1  0.00000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000185994 
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  32.26 
 
 
705 aa  69.7  0.00000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0802  two component transcriptional regulator  32.08 
 
 
220 aa  70.1  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_14770  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  36.13 
 
 
226 aa  69.7  0.00000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.383411  n/a   
 
 
-
 
NC_007413  Ava_3616  response regulator receiver Signal transduction histidine kinase  35 
 
 
393 aa  69.3  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159723  normal  0.789101 
 
 
-
 
NC_013173  Dbac_0658  histidine kinase  32.28 
 
 
627 aa  69.3  0.00000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2262  response regulator receiver sensor signal transduction histidine kinase  36.97 
 
 
406 aa  68.9  0.00000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.146487 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  35.4 
 
 
453 aa  69.3  0.00000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_011729  PCC7424_1422  response regulator receiver sensor signal transduction histidine kinase  33.04 
 
 
361 aa  69.3  0.00000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011891  A2cp1_0631  response regulator receiver protein  32.2 
 
 
123 aa  68.9  0.00000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_05730  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  36.21 
 
 
242 aa  68.9  0.00000000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.587783  normal 
 
 
-
 
NC_011145  AnaeK_0640  response regulator receiver protein  32.2 
 
 
123 aa  69.3  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2749  transcription response regulator-like protein  29.51 
 
 
221 aa  68.6  0.00000000003  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00061025  n/a   
 
 
-
 
NC_013204  Elen_2866  two component transcriptional regulator, winged helix family  31.15 
 
 
231 aa  68.6  0.00000000003  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1132  PAS/PAC sensor hybrid histidine kinase  32.79 
 
 
647 aa  68.6  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0372822  normal  0.204987 
 
 
-
 
NC_007413  Ava_1030  response regulator receiver modulated diguanylate cyclase  32.77 
 
 
330 aa  68.6  0.00000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.33399 
 
 
-
 
NC_011146  Gbem_2025  response regulator receiver sensor signal transduction histidine kinase  36.75 
 
 
452 aa  68.6  0.00000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_5178  two component heavy metal response transcriptional regulator  37.07 
 
 
225 aa  68.6  0.00000000003  Pseudomonas putida W619  Bacteria  normal  0.341313  normal 
 
 
-
 
NC_014210  Ndas_3745  two component transcriptional regulator, winged helix family  42.16 
 
 
225 aa  68.6  0.00000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.5489  normal 
 
 
-
 
NC_008025  Dgeo_1069  response regulator receiver protein  34.15 
 
 
128 aa  68.6  0.00000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0511705  normal  0.476202 
 
 
-
 
NC_011146  Gbem_0522  response regulator receiver protein  33.61 
 
 
125 aa  68.2  0.00000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1765  two component transcriptional regulator  39.81 
 
 
225 aa  68.6  0.00000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1199  multi-sensor hybrid histidine kinase  33.63 
 
 
962 aa  68.6  0.00000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013159  Svir_30940  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  40.2 
 
 
225 aa  68.6  0.00000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0298  signal transduction histidine kinase  39.34 
 
 
349 aa  68.2  0.00000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.228007  hitchhiker  0.00285782 
 
 
-
 
NC_009784  VIBHAR_06112  transcriptional regulatory protein CpxR  36.29 
 
 
252 aa  68.2  0.00000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008541  Arth_2712  two component transcriptional regulator  35.59 
 
 
224 aa  68.2  0.00000000004  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00552555  n/a   
 
 
-
 
NC_013947  Snas_5345  two component transcriptional regulator, winged helix family  36.36 
 
 
230 aa  68.2  0.00000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.264155 
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  32.77 
 
 
227 aa  68.2  0.00000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.71904 
 
 
-
 
NC_008789  Hhal_2149  multi-sensor hybrid histidine kinase  35.16 
 
 
680 aa  68.2  0.00000000004  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1319  response regulator receiver protein  38.76 
 
 
129 aa  67.8  0.00000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2563  transcriptional regulatory protein ResD  28.69 
 
 
221 aa  67.8  0.00000000005  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00803163 
 
 
-
 
NC_009485  BBta_4427  multi-sensor hybrid histidine kinase  34.96 
 
 
772 aa  67.8  0.00000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2424  two component transcriptional regulator  28.69 
 
 
221 aa  67.8  0.00000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0245011  n/a   
 
 
-
 
NC_007908  Rfer_3778  response regulator receiver domain-containing protein  35.43 
 
 
124 aa  67.8  0.00000000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0378  two component transcriptional regulator  37.82 
 
 
234 aa  67.8  0.00000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4800  heavy metal response regulator  30 
 
 
224 aa  67.4  0.00000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00185939 
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  33.05 
 
 
123 aa  67.4  0.00000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1670  response regulator receiver sensor signal transduction histidine kinase  39.81 
 
 
394 aa  67.4  0.00000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00261958  normal  0.184327 
 
 
-
 
NC_009485  BBta_2154  hypothetical protein  35.9 
 
 
786 aa  67.4  0.00000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0411448  normal 
 
 
-
 
NC_013440  Hoch_2220  multi-sensor hybrid histidine kinase  35.54 
 
 
928 aa  67.4  0.00000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.467526 
 
 
-
 
NC_012850  Rleg_1382  response regulator PleD  37.61 
 
 
457 aa  67.4  0.00000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.390598 
 
 
-
 
NC_010552  BamMC406_3349  two component heavy metal response transcriptional regulator  33.33 
 
 
223 aa  67.4  0.00000000007  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6310  two component transcriptional regulator, winged helix family  35.34 
 
 
261 aa  67  0.00000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.534044  n/a   
 
 
-
 
NC_013501  Rmar_2518  response regulator receiver protein  39.25 
 
 
519 aa  67.4  0.00000000007  Rhodothermus marinus DSM 4252  Bacteria  normal  0.487815  n/a   
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  33.33 
 
 
223 aa  67.4  0.00000000007  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1290  response regulator PleD  37.61 
 
 
457 aa  67.4  0.00000000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0138689  hitchhiker  0.00259394 
 
 
-
 
NC_009051  Memar_0238  CheA signal transduction histidine kinases  39.25 
 
 
764 aa  67.4  0.00000000007  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009338  Mflv_3998  two component transcriptional regulator  35.34 
 
 
220 aa  67  0.00000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.278973  normal  0.137181 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  30.4 
 
 
237 aa  67  0.00000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2180  response regulator receiver  34.19 
 
 
151 aa  67  0.00000000008  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.269305  n/a   
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  31.67 
 
 
236 aa  67  0.00000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_007298  Daro_2788  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.23 
 
 
715 aa  67  0.00000000009  Dechloromonas aromatica RCB  Bacteria  normal  0.941936  normal 
 
 
-
 
NC_011368  Rleg2_4585  two component transcriptional regulator, winged helix family  32.23 
 
 
234 aa  66.6  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.209184  normal 
 
 
-
 
NC_007492  Pfl01_4221  two component transcriptional regulator  34.65 
 
 
240 aa  66.6  0.0000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.430301  normal  0.246318 
 
 
-
 
NC_009523  RoseRS_2694  putative PAS/PAC sensor protein  37.93 
 
 
969 aa  66.6  0.0000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.0176534  normal 
 
 
-
 
NC_007952  Bxe_B2983  periplasmic sensor hybrid histidine kinase  37.72 
 
 
1167 aa  66.6  0.0000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2514  two component transcriptional regulator, winged helix family  37.93 
 
 
226 aa  66.6  0.0000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.24701  n/a   
 
 
-
 
NC_008345  Sfri_4005  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.14 
 
 
696 aa  66.2  0.0000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2857  sensory box/response regulator  37.5 
 
 
754 aa  66.6  0.0000000001  Methylibium petroleiphilum PM1  Bacteria  normal  0.917485  normal 
 
 
-
 
NC_013061  Phep_0587  ATP-binding region ATPase domain protein  33.61 
 
 
1161 aa  66.2  0.0000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0027  two component transcriptional regulator, winged helix family  35.77 
 
 
260 aa  66.2  0.0000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0378  DNA-binding heavy metal response regulator  30 
 
 
224 aa  65.5  0.0000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1213  response regulator receiver modulated diguanylate cyclase  39.66 
 
 
457 aa  65.9  0.0000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  35 
 
 
363 aa  65.9  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0065  histidine kinase  31.4 
 
 
578 aa  65.9  0.0000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1617  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.07 
 
 
860 aa  65.9  0.0000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_02230  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  29.51 
 
 
229 aa  65.9  0.0000000002  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  37.19 
 
 
227 aa  65.5  0.0000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_008726  Mvan_2389  two component transcriptional regulator  34.78 
 
 
219 aa  65.9  0.0000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.753035  normal  0.0318145 
 
 
-
 
NC_010524  Lcho_2717  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.46 
 
 
720 aa  65.9  0.0000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00595541 
 
 
-
 
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