Gene Hhal_0311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_0311 
Symbol 
ID4711245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp350650 
End bp352569 
Gene Length1920 bp 
Protein Length639 aa 
Translation table11 
GC content69% 
IMG OID639854771 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001001907 
Protein GI121997120 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGGAGC CTTCCCGCTA CGGTTGGGAC GACGCGATCA ACGCCGTCCA CAGCCTGGTC 
TTCCTGCACG ATGGCGACTA CCGCATCCTG CGGGCCAATC GCGCCTACCT GGAGTGGGCC
GGCGCCTCGA CTGAGGAAGA GGTCATCGGC CGGCCCTATT GGGAGGTCTT CCCCCGTGGT
GACGGCCCCC TGCCGGCGTG CCGCCGGGCC ATGGAGCAGC TCGGCGCCGG ATCCCCCCAG
GCCGGGGATG GCGTCGAGTC CAGCGAGGAG ATCGAGTTGC CGAGTGGCGA GATCTTCCGT
TCGCGCTCCT ACACGGTGCG CGAGGCGGAT GGCAGCTACC GCTGCTCGGT CCACATCCTT
GAGGACATCA CCGAGCAGCG GCGTCTGGAG CAGGCCCGGC AGGGCGCCGA GGCCAAGGTA
AAGGCGATCG CTGCGGCGGC CCGGGACGCC ATTGTGCTGA TCGACGATGA CGACCGCCTG
GTCTACTGCA ACGCCGCCTT CGAGGCGCTG CTCGGCTACG AGGCCGGGGA GCTGGTCGGC
AGCCCCTTCC ACGAACAGGT GGCGCCGAGC CGTTACCGGA CCTCGGCGCG GACGGGGATG
CGCCGCTTCC GGGTCTGCGG GGGTGGGGCG GTGATCGATC AGCGCACCGA GATCGAGGCG
CTCCACCGGG ATGGCCACGA GGTACCGCTG GAGCTCTCGG TCTCGCCGCT GCAGCTCGAC
GGGCGCTGGC ACGCCGTCGG GGTGATGCGG GATATCAGCG AGCGTCGGGC GTTGGAGGTG
GATCGTCAGC GCGCCGAGGC GGATCGCAAT ATCTTCCTGG CGGCGATCAG TCACGACCTG
CGCACGCCGC TCAACGCCAT CGTCGGTTTT ACCGACCTGC TGGCCCGCTC CGAGCTCGAT
ACCGAGCAGC GCCATCACGT CGGGCTGTGC CGCAGCGCCA GTCAGACCCT GCTCGGGCTC
ATCGATACCG TCCTCGAGCT CTCGCGTCTG GAGGCCGGTC GCGTGGAGCT GCGCGACGAG
CGTTTCAACC TGCCGGCGTT CCTGACCACG CAGATCGGTC TGCTTCAGCC CATGGCCGAA
GAAAAAGGCC TATCGCTGAT CTGGTCGCTG GAACCGGACA TGCCCGGCTG GGTGCGCGGC
GATCCGGTAC GCTTCGGGCA GGTTCTCTAC AACCTGGTCA GCAACGCCCT GAAGTTCACC
GAGACCGGCT CGATCCGCGT CGATGGCGCG CGCAGCACCT GCGGGCGTCT GATGTTCACG
GTGGCCGATA CCGGGCCGGG GATCCCCGAG GCGGATCAGG GCCGGATCTT CGACGCCTTC
TGTCAGGGCG GTCCGGTGCT CGCCCGCAAG GAGGGCAGCG GGCTGGGGCT GAAGATCTGC
CAGGAGCTGG TGCGGCTGAT GGGCGGCACC ATCCAGCTGG TGAGCACCCC GGGCGTGGGC
ACCACCTTCC GCTTTACGGT CACGCTGCCG AGCGCGGAAC CGGACCGGGC GGAGGCCGCG
GCGGTGCCGC AGGAGGCCGT GGATACCGAG GCGCCGGTGG GGCAGGGGCT CTGGGTGCTG
GTGGCCGAGG ATGATCCGAC CAACGCCTTG CTGTTCCAGA AGCTGCTGGA GCAGGCCGGC
TGCCATGTGA CGGTGGTCGG CAATGGCCGG GAGGCGGTGC GCCACTGGCA GCGCGCGTCG
CCGGATCTGG TGCTGATGGA TCTGCAGATG CCGGAGGTGG ACGGCCGCGA GGCGACCCGC
CGGATCCGCG CCCGGGAGGC CGAGGACTGG CTGCCGCGCA CCCCCATCGC CCTGGTCACC
GCCCACGCCC TGGACAGCTT CCAGCAGGAG TGTTTTCGCA TCGGTTGTGA TGCCTACCTG
ACCAAGCCCC TGGATCGGGC GGAACTCTGG CAGTTGCTGG CGCGGGTGCG CGCCGCTTAG
 
Protein sequence
MTEPSRYGWD DAINAVHSLV FLHDGDYRIL RANRAYLEWA GASTEEEVIG RPYWEVFPRG 
DGPLPACRRA MEQLGAGSPQ AGDGVESSEE IELPSGEIFR SRSYTVREAD GSYRCSVHIL
EDITEQRRLE QARQGAEAKV KAIAAAARDA IVLIDDDDRL VYCNAAFEAL LGYEAGELVG
SPFHEQVAPS RYRTSARTGM RRFRVCGGGA VIDQRTEIEA LHRDGHEVPL ELSVSPLQLD
GRWHAVGVMR DISERRALEV DRQRAEADRN IFLAAISHDL RTPLNAIVGF TDLLARSELD
TEQRHHVGLC RSASQTLLGL IDTVLELSRL EAGRVELRDE RFNLPAFLTT QIGLLQPMAE
EKGLSLIWSL EPDMPGWVRG DPVRFGQVLY NLVSNALKFT ETGSIRVDGA RSTCGRLMFT
VADTGPGIPE ADQGRIFDAF CQGGPVLARK EGSGLGLKIC QELVRLMGGT IQLVSTPGVG
TTFRFTVTLP SAEPDRAEAA AVPQEAVDTE APVGQGLWVL VAEDDPTNAL LFQKLLEQAG
CHVTVVGNGR EAVRHWQRAS PDLVLMDLQM PEVDGREATR RIRAREAEDW LPRTPIALVT
AHALDSFQQE CFRIGCDAYL TKPLDRAELW QLLARVRAA