| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4005 |
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| Symbol | |
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| ID | 4280896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4773208 |
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| End bp | 4775298 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638136826 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_752669 |
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| Protein GI | 114565155 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTTAA ATACACTTCA AGATGTGGTA TTAATCGTTG ATGATGATCC CGTCATTCGA
ATTCTGATGC GTCGGGCACT AAGCCATTCT GTTGGCAATA TTATTGAGGC CAGCAGTGGC
GAAGAGGCGA TACAGCTTTT TTCCGAACAT ACACCAGATT TAATATTGCT CGATGTGTCG
ATGGACAAAA TGAATGGCTT TGAATGCTGT TCAGTGATCC GTTCATTACC CGAAGGGGAT
AATGTCGCCA TTATTATGGT GACAGCATTA GATCAACCTC AAGACATTCA AAAAGCCTTC
GATGTGGGTG CAACAGATTT CATGACCAAG CCGGTTAAGT GGCCGTTGCT GAGTCACCGC
ATCCATTATG TGCTTAAAGC CAATAAAACA ATCAAAGAGC TAACCAAAAG TAAAAACAAA
CTTGCCAGAG CACAAAGCAT CGCCCACTTG GGATCATGGG AGTGGGACTT TACATCCGAT
AAGTTAGACT GCTCTGATGA AGTTTATCGT ATGTTGGGGA TGCAACCTCA AGAGATAGAC
ATTACGTTTT CTAAATTGCT AGAAATCATC CACCCAGATG ATCGTGAATT TTTAAAATTA
ACGGTTAAAA CAGCGTTAAA GCATCGGCAA CCCTATGATA TTGAATATCG TGTGTTACAT
GGTAGTGGTG AGATTATTAC CCTACATGAC CGAACAGATA TCACTTATGA TTTTGGTGAA
CCGCGAATTA ATGGCACCTT GCATGATATT TCAAGCCGCA AAAAATCAGA GCAAGAAATC
GCTTATTATG CCTTTTACGA TACGTTAACG GATCTACCGA ACAGGCGTAA ATTTCTGTTG
CAGTTAGACT CTGCAATTGC TTCAGCCAAA CGTCACTCAA CAAAATTAGC ATTACTATTC
ATTGATTTAG ATCATTTCAA AAGAATAAAT GATACCTTGG GACACAAAGC CGGTGATGAG
TTGCTATGCG AAACGGCGAC ACGGATAAAA AGTTCTGTAC GTATTTCAGA TGAGCTTAGT
GTTGGCAGCC GGGTTGATTA TGAAAATGAA CATCTTGCCC GTTTGGGCGG CGATGAATTC
ACTTTACTTT TATGTGAGTT AGAAGCGTTT GATAATGTCG CTATTATTGC TCAGCGAGTG
CTTGATGCGC TTTCGAAACC CTTTGTTATT CAGGGGCAAC AAACATTTAT TTCGGCCAGC
ATCGGTATTT CTTTTTATCC CGACGACGGT GAATCCGGCG ATATTTTACT GCAGCATGCA
GATACTGCCA TGTATGAAGT GAAACACAAC GGCAAAAACG GTTACCAACT TTTTTCACAT
GAAATGCATA AATCATTAAT GGATAGGCTC AAAATTGAAG TCGAACTGCG AGAGGCTATA
AGGTTAGGAG ATCAGTTTGT ACTTTATTAC CAACCACAAA TTGACTCAGC AAATGACAAC
ATTGTTGGAT ACGAAGCATT ATTGCGTTGG AACCATCCAA CAAGAGGCTT GTTAACACCG
ATAGATTTTC TCGCGATTGC TGAAAGTAGC GGCTTGATTA TCCCTATTGG AGAATGGGCT
TTGCTTGAAG CTTGTAGCAA AGCGAAACAG ATACATATTG CAGATGCCAA TTTTCAGCGC
ATGGCTGTCA ATCTATCTGC ATTGCAATTC AACCATGCAA ATATTTTTGA CCACGTGAAA
CGTGCACTTG TTGAAACAGG TTTACCACCA AATCTACTTG AGCTTGAAAT TACAGAATCA
GCCATCATCA GTAACGTCGA TGAGGCGATT GCTTTGCTAT TTATGTTAAA AAAACTAGGT
GTGAAGTTAG CTATTGATGA TTTTGGAACC GGCTACTCTT CATTAAACTA CTTAAAGAGT
TTCCCCATTG ATACATTAAA AATTGATAAG TCGTTTGTAG ATGGAATTGT GAGCAATCAA
AAAGATGCCG CAATCGCTCG CACAATCGTG CAGTTAGCAC TTAATTTAGA GCTCAGTACC
ATCGCTGAAG GTGTCGAGTA TATAGAGCAG CATGAGTTAC TTAAGGCTAT GGGATGTACT
AATTTACAAG GTTATTTGTA TAGTAAACCC TTACCTCCGG AAATGGTTTA A
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| Protein sequence | MSLNTLQDVV LIVDDDPVIR ILMRRALSHS VGNIIEASSG EEAIQLFSEH TPDLILLDVS
MDKMNGFECC SVIRSLPEGD NVAIIMVTAL DQPQDIQKAF DVGATDFMTK PVKWPLLSHR
IHYVLKANKT IKELTKSKNK LARAQSIAHL GSWEWDFTSD KLDCSDEVYR MLGMQPQEID
ITFSKLLEII HPDDREFLKL TVKTALKHRQ PYDIEYRVLH GSGEIITLHD RTDITYDFGE
PRINGTLHDI SSRKKSEQEI AYYAFYDTLT DLPNRRKFLL QLDSAIASAK RHSTKLALLF
IDLDHFKRIN DTLGHKAGDE LLCETATRIK SSVRISDELS VGSRVDYENE HLARLGGDEF
TLLLCELEAF DNVAIIAQRV LDALSKPFVI QGQQTFISAS IGISFYPDDG ESGDILLQHA
DTAMYEVKHN GKNGYQLFSH EMHKSLMDRL KIEVELREAI RLGDQFVLYY QPQIDSANDN
IVGYEALLRW NHPTRGLLTP IDFLAIAESS GLIIPIGEWA LLEACSKAKQ IHIADANFQR
MAVNLSALQF NHANIFDHVK RALVETGLPP NLLELEITES AIISNVDEAI ALLFMLKKLG
VKLAIDDFGT GYSSLNYLKS FPIDTLKIDK SFVDGIVSNQ KDAAIARTIV QLALNLELST
IAEGVEYIEQ HELLKAMGCT NLQGYLYSKP LPPEMV
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