| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1269 |
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| Symbol | |
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| ID | 3673359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1333954 |
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| End bp | 1336071 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637709954 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_315027 |
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| Protein GI | 74317287 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCTG CGACGCGTAT CCTCGTCGCC GACGACGAGC CGACGGCCCG CCTGCTCATG
GCGGCCGCCC TCGAGAAGGC CGGCTTCGAG GTCGCCGTGG CGGTCGACGG CGACGACGCC
TTGCGGCAGT TTCGTGCGCA GCCGAGCGCC CTGGTCATGC TCGACGTCGA CATGCCCGGT
CGCAACGGCT ACGAATTGTG CGCGATCCTG CGCCGCGAAT TCGGCGACGA ACTGCCGATC
GTGATGGTCA CCGCGATGGA CGACAACGAG TCGATCGAGC GGGCCTACGA ATACGGCGCG
ACCGATTTCA TCCCCAAACC GATTAACTGG TCGCTCATCG GCCACCGGGT CAAATATCTG
CTGCGCGCCT CCGACGCGCT GCGCGAACTG CATGCGGCGA ATGCCCGCAA CGCCGCGCTG
CTCAGAGCGA TCCCGGATCT CCTGTTCGAA GTCGACGTGG ACGGCCGTTA CCTCAGTTGC
CATTCCTCGA GGAAAGACCT GCTCGTCGCG CCCGGCGAAT CCCTGATCGG ACGCACCATC
GACGACGTAC TTCCGCCCGA GGCCGCGCGC ATCTGCATGG CGGCCTTGCA TGAGGCGAAC
GAGGCCGGGC TGGTGACCGG CAGGCAGTTC GAGTTGATGC TCGCGTCCGG CGCATTCTGG
TTCGAGTTGT CGGTTTCGCG CAAATCCGCC GAGCCCGGAC AGAAGCCGAC CTTCGTCGTC
CTTGCGCGCA ACATCACCGA ACGCAAGGCG GCCGAGCAGA AGATATACGA ACTCGCCTTC
TTCGACAGCC TGACGCATCT GCCGAACCGG CAGTCGTTTC TCGAGCGGCT CGCGCAGGAC
ATCCGGGTCG CGCAGCGCGA GAAACAGAAG CTCGCCGTCC TGTTCATGGA CCTCGACGGC
TTCAAGGGCG TCAACGACAC CATGGGTCAC GATGCCGGCG ACCTGATTCT CCAGTCCGCG
GCCGAGCGGC TGCGAAACAG CATCCGGCCC GGCGACAGCG CGTCGCGCCT GGCCGAAGAC
GGGGCCCAGG TGGGGCTCGC GCGCCTGGGG GGCGACGAGT TCACGGCGGT GATCCCGGGG
ATCACCCATG AGGAGGACGC GTTGCGCGTC GCCAATCGCA TCCGCGAACA GATGCGCACC
CCGTTCGTGC TGGCCGGCAG CGAAGTCGTC CTCACGTCCA GCATCGGCAT CGCGGTTTTC
CCGCACGACG GGGCCGACGC GGCGACCCTG CTCAAGCACG CCGACACCGC GATGTACCAC
GCAAAGAGCT GCGGCCGCGA CAACTGCCAG TTCTATAGCG CCGCGCTCAC GCAGCGTGCG
CAGCAGCGGC TGACGCTCGA GAACAACCTG CGTCAGGCGC TGGAGCGCGG CGAGTTCGAC
CTCGTCTACC AGCCGCAGAT CGACGTCGCG AGCGGGCGTA TCCGCTCTGT CGAAGCCCTC
ATCCGCTGGA ATCACCCGGC CGGCGGCGTC ATCGCGCCGC AGGACTTCAT CCCGCTCGCC
GAGGAGAACG GCCTCATCGT GCCGATCGGC GAATGGGCGT TGCGCACGGC CGCGACGGAC
GCCGCACGCT GGCAGGATGG CGGGCGGGTC TGCGTGGCGG TCAACCTGTC TCCGGTGCAG
CTACGCGCCG CCGACCTCGT CCCGACGCTC GTCGACATCC TGCGCGAGAC CGGCCTGGCG
CCGGGCCTGC TCGAACTCGA AGTGACCGAA GGCGCACTGA TGGAAGAGCG CGAAGCCACC
CACGCGACGC TCGAAGCACT GCTCGCCGGG GGCGTGCAGC TCGCGCTGGA CGATTTCGGT
ACTGGCTACT CGTCGCTGGG CTATCTCAAG CGTGTGCCGC TCAGCAACCT CAAGATCGAT
CAGAGCTTCG TGCACGGGCT GCCGCACGAC CGCGAAAATC TGGCGATCGT GCGCACGATC
CTGGCGCTGG CGAAGAATCT CGGTTTCCGC ACCACGGCGG AGGGGGTCGA AACGGCCGAG
CAGGCCACGA CCCTCGCAGG CATCGGCTGC GACGCGCTGC AGGGCTTTTA CTTCAGCCGG
CCGCTGCCGG CCGGCGCGAT TCCCGCGCTG CTGCAGCGGC GTTGGCGGCT GGACGAAACC
GACCCGGGCG GCGGCTAA
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| Protein sequence | MAAATRILVA DDEPTARLLM AAALEKAGFE VAVAVDGDDA LRQFRAQPSA LVMLDVDMPG
RNGYELCAIL RREFGDELPI VMVTAMDDNE SIERAYEYGA TDFIPKPINW SLIGHRVKYL
LRASDALREL HAANARNAAL LRAIPDLLFE VDVDGRYLSC HSSRKDLLVA PGESLIGRTI
DDVLPPEAAR ICMAALHEAN EAGLVTGRQF ELMLASGAFW FELSVSRKSA EPGQKPTFVV
LARNITERKA AEQKIYELAF FDSLTHLPNR QSFLERLAQD IRVAQREKQK LAVLFMDLDG
FKGVNDTMGH DAGDLILQSA AERLRNSIRP GDSASRLAED GAQVGLARLG GDEFTAVIPG
ITHEEDALRV ANRIREQMRT PFVLAGSEVV LTSSIGIAVF PHDGADAATL LKHADTAMYH
AKSCGRDNCQ FYSAALTQRA QQRLTLENNL RQALERGEFD LVYQPQIDVA SGRIRSVEAL
IRWNHPAGGV IAPQDFIPLA EENGLIVPIG EWALRTAATD AARWQDGGRV CVAVNLSPVQ
LRAADLVPTL VDILRETGLA PGLLELEVTE GALMEEREAT HATLEALLAG GVQLALDDFG
TGYSSLGYLK RVPLSNLKID QSFVHGLPHD RENLAIVRTI LALAKNLGFR TTAEGVETAE
QATTLAGIGC DALQGFYFSR PLPAGAIPAL LQRRWRLDET DPGGG
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