Gene Tbd_1269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1269 
Symbol 
ID3673359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1333954 
End bp1336071 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content68% 
IMG OID637709954 
Productresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase 
Protein accessionYP_315027 
Protein GI74317287 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCTG CGACGCGTAT CCTCGTCGCC GACGACGAGC CGACGGCCCG CCTGCTCATG 
GCGGCCGCCC TCGAGAAGGC CGGCTTCGAG GTCGCCGTGG CGGTCGACGG CGACGACGCC
TTGCGGCAGT TTCGTGCGCA GCCGAGCGCC CTGGTCATGC TCGACGTCGA CATGCCCGGT
CGCAACGGCT ACGAATTGTG CGCGATCCTG CGCCGCGAAT TCGGCGACGA ACTGCCGATC
GTGATGGTCA CCGCGATGGA CGACAACGAG TCGATCGAGC GGGCCTACGA ATACGGCGCG
ACCGATTTCA TCCCCAAACC GATTAACTGG TCGCTCATCG GCCACCGGGT CAAATATCTG
CTGCGCGCCT CCGACGCGCT GCGCGAACTG CATGCGGCGA ATGCCCGCAA CGCCGCGCTG
CTCAGAGCGA TCCCGGATCT CCTGTTCGAA GTCGACGTGG ACGGCCGTTA CCTCAGTTGC
CATTCCTCGA GGAAAGACCT GCTCGTCGCG CCCGGCGAAT CCCTGATCGG ACGCACCATC
GACGACGTAC TTCCGCCCGA GGCCGCGCGC ATCTGCATGG CGGCCTTGCA TGAGGCGAAC
GAGGCCGGGC TGGTGACCGG CAGGCAGTTC GAGTTGATGC TCGCGTCCGG CGCATTCTGG
TTCGAGTTGT CGGTTTCGCG CAAATCCGCC GAGCCCGGAC AGAAGCCGAC CTTCGTCGTC
CTTGCGCGCA ACATCACCGA ACGCAAGGCG GCCGAGCAGA AGATATACGA ACTCGCCTTC
TTCGACAGCC TGACGCATCT GCCGAACCGG CAGTCGTTTC TCGAGCGGCT CGCGCAGGAC
ATCCGGGTCG CGCAGCGCGA GAAACAGAAG CTCGCCGTCC TGTTCATGGA CCTCGACGGC
TTCAAGGGCG TCAACGACAC CATGGGTCAC GATGCCGGCG ACCTGATTCT CCAGTCCGCG
GCCGAGCGGC TGCGAAACAG CATCCGGCCC GGCGACAGCG CGTCGCGCCT GGCCGAAGAC
GGGGCCCAGG TGGGGCTCGC GCGCCTGGGG GGCGACGAGT TCACGGCGGT GATCCCGGGG
ATCACCCATG AGGAGGACGC GTTGCGCGTC GCCAATCGCA TCCGCGAACA GATGCGCACC
CCGTTCGTGC TGGCCGGCAG CGAAGTCGTC CTCACGTCCA GCATCGGCAT CGCGGTTTTC
CCGCACGACG GGGCCGACGC GGCGACCCTG CTCAAGCACG CCGACACCGC GATGTACCAC
GCAAAGAGCT GCGGCCGCGA CAACTGCCAG TTCTATAGCG CCGCGCTCAC GCAGCGTGCG
CAGCAGCGGC TGACGCTCGA GAACAACCTG CGTCAGGCGC TGGAGCGCGG CGAGTTCGAC
CTCGTCTACC AGCCGCAGAT CGACGTCGCG AGCGGGCGTA TCCGCTCTGT CGAAGCCCTC
ATCCGCTGGA ATCACCCGGC CGGCGGCGTC ATCGCGCCGC AGGACTTCAT CCCGCTCGCC
GAGGAGAACG GCCTCATCGT GCCGATCGGC GAATGGGCGT TGCGCACGGC CGCGACGGAC
GCCGCACGCT GGCAGGATGG CGGGCGGGTC TGCGTGGCGG TCAACCTGTC TCCGGTGCAG
CTACGCGCCG CCGACCTCGT CCCGACGCTC GTCGACATCC TGCGCGAGAC CGGCCTGGCG
CCGGGCCTGC TCGAACTCGA AGTGACCGAA GGCGCACTGA TGGAAGAGCG CGAAGCCACC
CACGCGACGC TCGAAGCACT GCTCGCCGGG GGCGTGCAGC TCGCGCTGGA CGATTTCGGT
ACTGGCTACT CGTCGCTGGG CTATCTCAAG CGTGTGCCGC TCAGCAACCT CAAGATCGAT
CAGAGCTTCG TGCACGGGCT GCCGCACGAC CGCGAAAATC TGGCGATCGT GCGCACGATC
CTGGCGCTGG CGAAGAATCT CGGTTTCCGC ACCACGGCGG AGGGGGTCGA AACGGCCGAG
CAGGCCACGA CCCTCGCAGG CATCGGCTGC GACGCGCTGC AGGGCTTTTA CTTCAGCCGG
CCGCTGCCGG CCGGCGCGAT TCCCGCGCTG CTGCAGCGGC GTTGGCGGCT GGACGAAACC
GACCCGGGCG GCGGCTAA
 
Protein sequence
MAAATRILVA DDEPTARLLM AAALEKAGFE VAVAVDGDDA LRQFRAQPSA LVMLDVDMPG 
RNGYELCAIL RREFGDELPI VMVTAMDDNE SIERAYEYGA TDFIPKPINW SLIGHRVKYL
LRASDALREL HAANARNAAL LRAIPDLLFE VDVDGRYLSC HSSRKDLLVA PGESLIGRTI
DDVLPPEAAR ICMAALHEAN EAGLVTGRQF ELMLASGAFW FELSVSRKSA EPGQKPTFVV
LARNITERKA AEQKIYELAF FDSLTHLPNR QSFLERLAQD IRVAQREKQK LAVLFMDLDG
FKGVNDTMGH DAGDLILQSA AERLRNSIRP GDSASRLAED GAQVGLARLG GDEFTAVIPG
ITHEEDALRV ANRIREQMRT PFVLAGSEVV LTSSIGIAVF PHDGADAATL LKHADTAMYH
AKSCGRDNCQ FYSAALTQRA QQRLTLENNL RQALERGEFD LVYQPQIDVA SGRIRSVEAL
IRWNHPAGGV IAPQDFIPLA EENGLIVPIG EWALRTAATD AARWQDGGRV CVAVNLSPVQ
LRAADLVPTL VDILRETGLA PGLLELEVTE GALMEEREAT HATLEALLAG GVQLALDDFG
TGYSSLGYLK RVPLSNLKID QSFVHGLPHD RENLAIVRTI LALAKNLGFR TTAEGVETAE
QATTLAGIGC DALQGFYFSR PLPAGAIPAL LQRRWRLDET DPGGG