More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_2130 on replicon NC_010681
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010681  Bphyt_2130  two component transcriptional regulator, LuxR family  100 
 
 
239 aa  478  1e-134  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  32.31 
 
 
219 aa  121  9.999999999999999e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  33.06 
 
 
248 aa  118  7e-26  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  31.42 
 
 
227 aa  114  1.0000000000000001e-24  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  28.7 
 
 
220 aa  113  3e-24  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.7 
 
 
220 aa  113  3e-24  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  29.6 
 
 
220 aa  112  4.0000000000000004e-24  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  28.44 
 
 
220 aa  112  7.000000000000001e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  28.96 
 
 
221 aa  112  7.000000000000001e-24  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  29.33 
 
 
238 aa  111  9e-24  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  29.15 
 
 
220 aa  110  1.0000000000000001e-23  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  29.6 
 
 
220 aa  111  1.0000000000000001e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  29.02 
 
 
220 aa  110  2.0000000000000002e-23  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  29.6 
 
 
220 aa  110  3e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  29.49 
 
 
220 aa  110  3e-23  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2880  two component LuxR family transcriptional regulator  33.95 
 
 
219 aa  109  3e-23  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.449931 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  29.6 
 
 
220 aa  110  3e-23  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  29.02 
 
 
220 aa  109  4.0000000000000004e-23  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  29.15 
 
 
219 aa  108  5e-23  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_007347  Reut_A2742  LuxR response regulator receiver  33.02 
 
 
219 aa  107  2e-22  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  30 
 
 
210 aa  106  3e-22  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  32.89 
 
 
221 aa  105  5e-22  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  29.6 
 
 
219 aa  105  8e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  33.77 
 
 
217 aa  104  1e-21  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  32.14 
 
 
215 aa  104  1e-21  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  33.02 
 
 
209 aa  104  1e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  33.33 
 
 
210 aa  103  2e-21  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  35.91 
 
 
214 aa  103  2e-21  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1595  two component transcriptional regulator, LuxR family  30.8 
 
 
203 aa  103  2e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.356259  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  31.98 
 
 
215 aa  103  3e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  27.4 
 
 
211 aa  102  4e-21  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  32.13 
 
 
215 aa  102  4e-21  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  31.7 
 
 
215 aa  102  4e-21  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  29.28 
 
 
216 aa  101  8e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  29.55 
 
 
210 aa  101  8e-21  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  31.31 
 
 
223 aa  101  9e-21  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  31.53 
 
 
217 aa  101  1e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  28.26 
 
 
216 aa  101  1e-20  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  29.15 
 
 
219 aa  100  1e-20  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  28.38 
 
 
224 aa  101  1e-20  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  31.53 
 
 
217 aa  101  1e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  29.46 
 
 
219 aa  100  2e-20  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  28.18 
 
 
218 aa  100  2e-20  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  30 
 
 
209 aa  100  2e-20  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  29.78 
 
 
215 aa  100  2e-20  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  28.57 
 
 
222 aa  100  3e-20  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  30.8 
 
 
212 aa  99.8  4e-20  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  30.17 
 
 
224 aa  98.6  8e-20  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  32.62 
 
 
221 aa  97.8  1e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  34.86 
 
 
216 aa  98.2  1e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  30.73 
 
 
214 aa  97.1  2e-19  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  29.86 
 
 
216 aa  97.1  2e-19  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00000000317123 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  30.32 
 
 
227 aa  97.1  2e-19  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  33.48 
 
 
224 aa  97.4  2e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  28.19 
 
 
223 aa  97.1  2e-19  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  30.73 
 
 
214 aa  97.1  2e-19  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  26.87 
 
 
227 aa  96.7  3e-19  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  27.47 
 
 
221 aa  96.3  4e-19  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  28.89 
 
 
219 aa  95.9  5e-19  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  28.38 
 
 
225 aa  95.9  5e-19  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  30.67 
 
 
212 aa  95.9  5e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  30.32 
 
 
239 aa  95.9  5e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2455  response regulator VSRC transcription regulator protein  29.95 
 
 
221 aa  95.5  6e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  29.41 
 
 
216 aa  95.5  6e-19  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000136895 
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  30.88 
 
 
221 aa  95.9  6e-19  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  31.36 
 
 
209 aa  95.5  6e-19  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  30.09 
 
 
214 aa  95.9  6e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  27.75 
 
 
223 aa  95.5  6e-19  Shewanella sp. MR-4  Bacteria  normal  normal  0.335218 
 
 
-
 
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  30.88 
 
 
221 aa  95.9  6e-19  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  30.84 
 
 
219 aa  95.5  7e-19  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  28.83 
 
 
224 aa  95.1  8e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  29.41 
 
 
216 aa  95.1  9e-19  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0994806 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  27.31 
 
 
223 aa  95.1  9e-19  Shewanella sp. MR-7  Bacteria  normal  normal  0.358413 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  29.41 
 
 
216 aa  95.1  9e-19  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2188  two component transcriptional regulator, LuxR family  34.43 
 
 
220 aa  94.7  1e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.546074  normal 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  29.33 
 
 
221 aa  94.7  1e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  32.11 
 
 
219 aa  94  2e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  29.07 
 
 
221 aa  93.6  2e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  30.7 
 
 
227 aa  94  2e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  28.63 
 
 
223 aa  94  2e-18  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.211294 
 
 
-
 
NC_010524  Lcho_1299  two component LuxR family transcriptional regulator  29.66 
 
 
273 aa  93.2  3e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0170327 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  29.68 
 
 
216 aa  93.2  3e-18  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_009439  Pmen_1951  two component LuxR family transcriptional regulator  29.52 
 
 
216 aa  92.8  4e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.142543  normal  0.70584 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  26.73 
 
 
218 aa  92.8  5e-18  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  30.45 
 
 
211 aa  92.4  6e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  28.83 
 
 
251 aa  92  8e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_014212  Mesil_0065  two component transcriptional regulator, LuxR family  31.11 
 
 
204 aa  92  8e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  31.53 
 
 
224 aa  91.7  8e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  30.49 
 
 
215 aa  91.7  9e-18  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  30.43 
 
 
233 aa  90.9  1e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  31.48 
 
 
209 aa  90.9  1e-17  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_006348  BMA1736  DNA-binding response regulator NarL  30.43 
 
 
233 aa  90.9  1e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  29.36 
 
 
217 aa  91.3  1e-17  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_007434  BURPS1710b_2764  DNA-binding response regulator NarL  30.43 
 
 
233 aa  90.9  1e-17  Burkholderia pseudomallei 1710b  Bacteria  normal  0.922757  n/a   
 
 
-
 
NC_009080  BMA10247_1519  DNA-binding response regulator NarL  30.43 
 
 
233 aa  90.9  1e-17  Burkholderia mallei NCTC 10247  Bacteria  normal  0.281442  n/a   
 
 
-
 
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  30 
 
 
211 aa  90.9  1e-17  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_008836  BMA10229_A3072  DNA-binding response regulator NarL  30.43 
 
 
233 aa  90.9  1e-17  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  30.43 
 
 
233 aa  90.9  1e-17  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  29.17 
 
 
213 aa  91.3  1e-17  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2246  DNA-binding response regulator NarL  30.43 
 
 
233 aa  90.9  1e-17  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
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