More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1460 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_1460  HAD family hydrolase  100 
 
 
229 aa  464  9.999999999999999e-131  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00552213  normal  0.266811 
 
 
-
 
NC_013457  VEA_001299  CbbY family protein  36.71 
 
 
216 aa  114  8.999999999999998e-25  Vibrio sp. Ex25  Bacteria  normal  0.916657  n/a   
 
 
-
 
NC_009080  BMA10247_1609  HAD-superfamily hydrolase  35.87 
 
 
224 aa  114  1.0000000000000001e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1060  haloacid dehalogenase, IA family protein  35.87 
 
 
224 aa  114  1.0000000000000001e-24  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0717  HAD-superfamily hydrolase  35.87 
 
 
224 aa  114  1.0000000000000001e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2296  HAD-superfamily hydrolase  35.87 
 
 
224 aa  114  1.0000000000000001e-24  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2990  HAD-superfamily hydrolase  35.87 
 
 
224 aa  114  1.0000000000000001e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0864  HAD family hydrolase  33.94 
 
 
226 aa  113  3e-24  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2435  HAD family hydrolase  35.11 
 
 
227 aa  112  5e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.396573  normal  0.95205 
 
 
-
 
NC_008060  Bcen_1819  HAD family hydrolase  35.11 
 
 
230 aa  112  6e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2430  HAD family hydrolase  35.11 
 
 
230 aa  112  6e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1218  putative hydrolase  35.98 
 
 
762 aa  111  1.0000000000000001e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05174  phosphoglycolate phosphatase  35.75 
 
 
256 aa  110  1.0000000000000001e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009076  BURPS1106A_1066  haloacid dehalogenase, IA family protein  34.98 
 
 
224 aa  109  3e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0780  HAD family hydrolase  34.95 
 
 
227 aa  109  3e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4817  HAD-superfamily hydrolase, subfamily IA, variant 3  36.36 
 
 
235 aa  107  2e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.821962  n/a   
 
 
-
 
NC_008709  Ping_3528  HAD family hydrolase  33.02 
 
 
222 aa  107  2e-22  Psychromonas ingrahamii 37  Bacteria  normal  0.894258  hitchhiker  0.00350401 
 
 
-
 
NC_009456  VC0395_0037  haloacid dehalogenase/epoxide hydrolase family protein  35.75 
 
 
219 aa  106  3e-22  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0452  HAD-superfamily hydrolase, subfamily IA, variant 3  33.33 
 
 
227 aa  105  7e-22  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5761  HAD family hydrolase  34.86 
 
 
230 aa  105  7e-22  Burkholderia sp. 383  Bacteria  normal  normal  0.434406 
 
 
-
 
NC_011989  Avi_1034  hydrolase  34.57 
 
 
217 aa  105  7e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0935  HAD family hydrolase  34.92 
 
 
235 aa  105  8e-22  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.941543  normal 
 
 
-
 
NC_007958  RPD_3933  HAD family hydrolase  34.78 
 
 
271 aa  103  2e-21  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_0542  hydrolase  33.03 
 
 
225 aa  101  8e-21  Xylella fastidiosa M12  Bacteria  normal  0.491879  n/a   
 
 
-
 
NC_011369  Rleg2_0846  HAD-superfamily hydrolase, subfamily IA, variant 3  35.23 
 
 
231 aa  100  1e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.814852 
 
 
-
 
NC_010577  XfasM23_0479  HAD family hydrolase  32.57 
 
 
225 aa  101  1e-20  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2343  HAD family hydrolase  35.32 
 
 
227 aa  101  1e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.187691 
 
 
-
 
NC_008390  Bamb_2477  HAD family hydrolase  34.86 
 
 
227 aa  99.8  3e-20  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1286  HAD family hydrolase  34.78 
 
 
229 aa  99  5e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3074  HAD family hydrolase  29.79 
 
 
222 aa  97.8  1e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2266  HAD-superfamily hydrolase, subfamily IA, variant 3  30.56 
 
 
220 aa  96.3  4e-19  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03084  HAD superfamily hydrolase  35.81 
 
 
226 aa  95.9  5e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0863  HAD-superfamily hydrolase  35.43 
 
 
224 aa  93.2  3e-18  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00905337  n/a   
 
 
-
 
NC_007947  Mfla_1729  HAD family hydrolase  31.22 
 
 
728 aa  93.2  3e-18  Methylobacillus flagellatus KT  Bacteria  normal  0.696153  hitchhiker  0.000289006 
 
 
-
 
NC_010338  Caul_3346  HAD family hydrolase  33.69 
 
 
221 aa  92.8  4e-18  Caulobacter sp. K31  Bacteria  normal  0.363754  normal 
 
 
-
 
NC_009338  Mflv_3054  HAD family hydrolase  35.23 
 
 
224 aa  92.8  4e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.751068  normal  0.223571 
 
 
-
 
NC_011661  Dtur_0461  HAD-superfamily hydrolase, subfamily IA, variant 3  30.48 
 
 
217 aa  91.3  1e-17  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1550  HAD-superfamily hydrolase, subfamily IA, variant 3  34.85 
 
 
249 aa  89.7  3e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.204001 
 
 
-
 
NC_013173  Dbac_1634  HAD-superfamily hydrolase, subfamily IA, variant 3  30.66 
 
 
221 aa  88.6  7e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0501975  n/a   
 
 
-
 
NC_013441  Gbro_2452  HAD-superfamily hydrolase, subfamily IA, variant 3  37.44 
 
 
232 aa  87.8  1e-16  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4044  HAD-superfamily hydrolase, subfamily IA, variant 3  34.12 
 
 
228 aa  87.8  1e-16  Variovorax paradoxus S110  Bacteria  normal  0.363357  n/a   
 
 
-
 
NC_010322  PputGB1_1571  HAD family hydrolase  32.56 
 
 
714 aa  87  2e-16  Pseudomonas putida GB-1  Bacteria  normal  normal  0.882263 
 
 
-
 
NC_008726  Mvan_3473  HAD family hydrolase  34.74 
 
 
243 aa  87  2e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA2733  HAD-superfamily hydrolase, subfamily IA, variant 3 family protein  34.54 
 
 
237 aa  86.7  3e-16  Methylococcus capsulatus str. Bath  Bacteria  normal  0.53567  n/a   
 
 
-
 
NC_013946  Mrub_2205  HAD-superfamily hydrolase subfamily IA, variant 3  30.69 
 
 
228 aa  85.5  5e-16  Meiothermus ruber DSM 1279  Bacteria  normal  0.322675  normal 
 
 
-
 
NC_008530  LGAS_1217  HAD family sugar phosphatase  28.43 
 
 
226 aa  85.9  5e-16  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2146  HAD-superfamily hydrolase, subfamily IA, variant 3  33.16 
 
 
213 aa  85.5  6e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1791  putative haloacid dehalogenase/epoxide hydrolase  33.33 
 
 
218 aa  85.5  6e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2172  HAD family hydrolase  32.83 
 
 
710 aa  85.1  8e-16  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2052  HAD superfamily hydrolase  33.67 
 
 
707 aa  85.1  8e-16  Pseudomonas putida KT2440  Bacteria  normal  0.380026  normal 
 
 
-
 
NC_009512  Pput_3689  HAD family hydrolase  33.67 
 
 
707 aa  85.1  8e-16  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1516  HAD-superfamily hydrolase, subfamily IA, variant 3  31.77 
 
 
227 aa  83.6  0.000000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2267  HAD-superfamily hydrolase, subfamily IA, variant 3  28.19 
 
 
219 aa  84  0.000000000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4133  HAD family hydrolase  32.39 
 
 
223 aa  83.6  0.000000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_1509  HAD-superfamily hydrolase, subfamily IA, variant 3  32.55 
 
 
231 aa  83.6  0.000000000000002  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  hitchhiker  0.000193428 
 
 
-
 
NC_013093  Amir_2212  HAD-superfamily hydrolase, subfamily IA, variant 3  34.9 
 
 
220 aa  83.2  0.000000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2485  HAD-superfamily hydrolase, subfamily IA, variant 3  30.89 
 
 
238 aa  83.2  0.000000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1853  HAD-superfamily hydrolase  31.94 
 
 
213 aa  82.4  0.000000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1351  HAD family hydrolase  33.5 
 
 
236 aa  82.4  0.000000000000005  Synechococcus elongatus PCC 7942  Bacteria  decreased coverage  0.00941248  normal 
 
 
-
 
NC_013595  Sros_5916  HAD family hydrolase  34.57 
 
 
218 aa  81.3  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0345843  normal  0.0351614 
 
 
-
 
NC_013132  Cpin_3992  HAD-superfamily hydrolase, subfamily IA, variant 3  29.1 
 
 
218 aa  81.3  0.00000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.177922  normal  0.23268 
 
 
-
 
NC_013510  Tcur_2293  HAD-superfamily hydrolase, subfamily IA, variant 3  31.52 
 
 
218 aa  80.9  0.00000000000001  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.0000494788  n/a   
 
 
-
 
NC_007777  Francci3_2637  HAD family hydrolase  33.85 
 
 
286 aa  80.5  0.00000000000002  Frankia sp. CcI3  Bacteria  normal  0.403398  normal  0.292856 
 
 
-
 
NC_013131  Caci_2412  HAD-superfamily hydrolase, subfamily IA, variant 3  32.31 
 
 
222 aa  80.9  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_1174  HAD-superfamily hydrolase, subfamily IA, variant 3  27.81 
 
 
225 aa  80.9  0.00000000000002  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4434  HAD-superfamily hydrolase, subfamily IA, variant 3  31.55 
 
 
217 aa  79.7  0.00000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_0822  HAD family hydrolase  29.19 
 
 
396 aa  79.7  0.00000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2632  HAD family hydrolase  28.71 
 
 
218 aa  80.1  0.00000000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3475  HAD-superfamily hydrolase, subfamily IA, variant 3  33.88 
 
 
221 aa  79.3  0.00000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1517  HAD family hydrolase  28.41 
 
 
216 aa  79.7  0.00000000000004  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1994  HAD family hydrolase  30.48 
 
 
202 aa  79.7  0.00000000000004  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000168215  unclonable  0.0000194697 
 
 
-
 
NC_009832  Spro_0845  fructose-1-phosphatase  31.91 
 
 
188 aa  78.6  0.00000000000008  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0000000012907  hitchhiker  0.000000242912 
 
 
-
 
NC_013169  Ksed_13910  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  32.67 
 
 
232 aa  78.2  0.00000000000009  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.491881  normal 
 
 
-
 
NC_010483  TRQ2_1566  HAD family hydrolase  27.84 
 
 
216 aa  78.2  0.0000000000001  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1824  HAD family hydrolase  35.84 
 
 
222 aa  77.8  0.0000000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0139  HAD-superfamily hydrolase, subfamily IA, variant 3  31.68 
 
 
220 aa  77  0.0000000000002  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000437323  n/a   
 
 
-
 
NC_014230  CA2559_05080  predicted phosphatase/phosphohexomutase  25.23 
 
 
227 aa  77.4  0.0000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.071348  n/a   
 
 
-
 
NC_008321  Shewmr4_1980  HAD family hydrolase  30.48 
 
 
202 aa  77  0.0000000000002  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0000000561924  normal  0.0500569 
 
 
-
 
NC_008577  Shewana3_2067  HAD family hydrolase  30.48 
 
 
202 aa  77  0.0000000000002  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00000117425  hitchhiker  0.0000127527 
 
 
-
 
NC_014151  Cfla_2008  HAD-superfamily hydrolase, subfamily IA, variant 3  34.17 
 
 
213 aa  77  0.0000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.296794  normal 
 
 
-
 
NC_007335  PMN2A_0056  HAD family hydrolase  29.03 
 
 
226 aa  76.6  0.0000000000003  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0690  HAD family hydrolase  32.46 
 
 
253 aa  75.9  0.0000000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.32351  normal  0.224311 
 
 
-
 
NC_013947  Snas_4498  HAD-superfamily hydrolase subfamily IA, variant 3  29.31 
 
 
223 aa  75.9  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.511661  normal  0.0143777 
 
 
-
 
NC_013235  Namu_2787  HAD-superfamily hydrolase, subfamily IA, variant 3  32.9 
 
 
230 aa  75.9  0.0000000000005  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00137861  hitchhiker  0.0000132599 
 
 
-
 
NC_009077  Mjls_3160  HAD family hydrolase  36.61 
 
 
228 aa  75.5  0.0000000000006  Mycobacterium sp. JLS  Bacteria  normal  0.0720917  normal  0.533727 
 
 
-
 
NC_008146  Mmcs_3148  HAD family hydrolase  36.61 
 
 
228 aa  75.5  0.0000000000006  Mycobacterium sp. MCS  Bacteria  normal  0.0274068  n/a   
 
 
-
 
NC_008705  Mkms_3210  HAD family hydrolase  36.61 
 
 
228 aa  75.5  0.0000000000006  Mycobacterium sp. KMS  Bacteria  normal  0.742759  normal  0.278604 
 
 
-
 
NC_002976  SERP1907  HAD superfamily hydrolase  26.13 
 
 
211 aa  75.1  0.0000000000008  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0320  HAD family hydrolase  39.25 
 
 
241 aa  75.1  0.0000000000009  Caulobacter sp. K31  Bacteria  normal  0.288784  normal 
 
 
-
 
NC_010322  PputGB1_2742  HAD family hydrolase  31.44 
 
 
218 aa  75.1  0.0000000000009  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010644  Emin_0820  HAD family hydrolase  27.13 
 
 
221 aa  75.1  0.0000000000009  Elusimicrobium minutum Pei191  Bacteria  normal  0.420721  hitchhiker  0.00000000104285 
 
 
-
 
NC_008009  Acid345_3787  HAD family hydrolase  39.6 
 
 
238 aa  74.7  0.000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.85061  normal 
 
 
-
 
NC_009438  Sputcn32_2065  beta-phosphoglucomutase family hydrolase  30.11 
 
 
201 aa  73.9  0.000000000002  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.000000166842  n/a   
 
 
-
 
NC_013421  Pecwa_1487  putative phosphatase  30.57 
 
 
224 aa  73.9  0.000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.751605  n/a   
 
 
-
 
NC_013162  Coch_0670  beta-phosphoglucomutase  30.53 
 
 
207 aa  73.9  0.000000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.922957  n/a   
 
 
-
 
NC_008639  Cpha266_2591  HAD family hydrolase  32.64 
 
 
220 aa  73.9  0.000000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.0000123522  n/a   
 
 
-
 
NC_013165  Shel_14830  haloacid dehalogenase superfamily enzyme, subfamily IA  29.17 
 
 
219 aa  73.6  0.000000000003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.187107 
 
 
-
 
NC_009012  Cthe_3073  HAD family hydrolase  27.86 
 
 
223 aa  73.2  0.000000000003  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00582956  n/a   
 
 
-
 
NC_013174  Jden_1197  HAD-superfamily hydrolase, subfamily IA, variant 3  33.51 
 
 
225 aa  73.6  0.000000000003  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0955551  normal  0.148864 
 
 
-
 
NC_011676  PHATRDRAFT_35659  predicted protein  28.82 
 
 
267 aa  72.8  0.000000000004  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
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