| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1217 |
|---|
| Symbol | |
|---|
| ID | 4439575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1215973 |
|---|
| End bp | 1216653 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 639673054 |
|---|
| Product | HAD family sugar phosphatase |
|---|
| Protein accession | YP_815024 |
|---|
| Protein GI | 116629852 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 105 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTG AAAATATTGC TGAACCAATT GAAGGCATCA TTTTTGATAT GGACGGGTTA
TTAGTTAATT CTGAAAAGTT ATATTGGGAT GCAAATATTG TTGCTGCTAA AGAAGCAAAT
TTAGATATTC CAGATGATAG TTACTTGAAG CTCGTTGGTT CATCGGTTAA AGAAATGGAA
GAATTTTATC ATCAACATTT TAAGACAGAA GCAGATCGTG ATAAGTTTAT TAAAAGAACT
GATGAACTAG TTTGGGAGTG GACTGATCAA GGAAAACTGA AGCTTCAAGC GGGTGTAAGA
GATGCGTTAG TAAAGTTTAA AGAAAAAAAG ATCAAACTGG CAATTGCATC AAGTAATTAT
GATGAAGTAG TGGCTCATAA TCTAGAAGTT CTAAAGATAA AGGATTATTT TGATTTTTAT
CTAAGCTATA AAGATGTTGA AGCAGGAAAA ATTAAGGCTA AGCCTGCACC AGATATCTAT
TTATTGGCAG CTAAAAAGAT GCAACTTCCA AAAGATAATT TGTTAGTATT TGAAGATTCT
AGCACAGGTG TTGCGTCTGC AAGTGCTGCA GGCTTAAAAT GCGTAATGGT ACCAGATTTA
AAGCAACCAA CAACTTTAGA TAAAAGGAAT GCAACATTAA TTTGCAAAGA TTTTTACACT
TTTCTTAAAA AAATCAAGTA G
|
|---|
| Protein sequence | MKVENIAEPI EGIIFDMDGL LVNSEKLYWD ANIVAAKEAN LDIPDDSYLK LVGSSVKEME
EFYHQHFKTE ADRDKFIKRT DELVWEWTDQ GKLKLQAGVR DALVKFKEKK IKLAIASSNY
DEVVAHNLEV LKIKDYFDFY LSYKDVEAGK IKAKPAPDIY LLAAKKMQLP KDNLLVFEDS
STGVASASAA GLKCVMVPDL KQPTTLDKRN ATLICKDFYT FLKKIK
|
|---|
| |