More than 300 homologs were found in PanDaTox collection
for query gene Sden_3161 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_3161  regulatory protein, MarR  100 
 
 
158 aa  323  6e-88  Shewanella denitrificans OS217  Bacteria  normal  0.0336123  n/a   
 
 
-
 
NC_009665  Shew185_3498  MarR family transcriptional regulator  66.67 
 
 
165 aa  201  3e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0799  MarR family transcriptional regulator  70.07 
 
 
161 aa  199  9.999999999999999e-51  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3426  transcriptional regulator, MarR family  66.01 
 
 
165 aa  199  9.999999999999999e-51  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0866  MarR family transcriptional regulator  66.01 
 
 
165 aa  199  9.999999999999999e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0934  MarR family transcriptional regulator  72.46 
 
 
163 aa  199  1.9999999999999998e-50  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3621  MarR family transcriptional regulator  65.36 
 
 
165 aa  197  3.9999999999999996e-50  Shewanella baltica OS195  Bacteria  normal  normal  0.597701 
 
 
-
 
NC_008345  Sfri_0578  transcriptional regulator, MarR family protein  69.06 
 
 
163 aa  197  3.9999999999999996e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0977  MarR family transcriptional regulator  74.05 
 
 
165 aa  194  4.0000000000000005e-49  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_3208  MarR family transcriptional regulator  72.52 
 
 
165 aa  194  6e-49  Shewanella sp. MR-7  Bacteria  normal  normal  0.469767 
 
 
-
 
NC_008577  Shewana3_3311  MarR family transcriptional regulator  73.28 
 
 
165 aa  194  6e-49  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3056  MarR family transcriptional regulator  72.52 
 
 
168 aa  193  9e-49  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0835  transcriptional regulator, MarR family protein  68.61 
 
 
150 aa  193  1e-48  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0815  MarR family transcriptional regulator  72.52 
 
 
165 aa  192  2e-48  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.0000550088 
 
 
-
 
NC_008700  Sama_0628  MarR family transcriptional regulator  69.63 
 
 
144 aa  187  5e-47  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001045  organic hydroperoxide resistance transcriptional regulator  64.12 
 
 
152 aa  171  2.9999999999999996e-42  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04763  hypothetical protein  64.12 
 
 
143 aa  169  1e-41  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0232  MarR family transcriptional regulator  58 
 
 
152 aa  163  6.9999999999999995e-40  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3331  MarR family transcriptional regulator  60.31 
 
 
155 aa  161  4.0000000000000004e-39  Colwellia psychrerythraea 34H  Bacteria  normal  0.376124  n/a   
 
 
-
 
NC_008709  Ping_2313  MarR family transcriptional regulator  55.81 
 
 
147 aa  152  2e-36  Psychromonas ingrahamii 37  Bacteria  normal  0.708353  normal 
 
 
-
 
NC_012803  Mlut_21070  transcriptional regulator  55.88 
 
 
143 aa  142  2e-33  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0960  MarR family transcriptional regulator  55.88 
 
 
146 aa  137  3.9999999999999997e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.305429  normal  0.461467 
 
 
-
 
NC_010725  Mpop_2137  transcriptional regulator, MarR family  49.61 
 
 
154 aa  136  8.999999999999999e-32  Methylobacterium populi BJ001  Bacteria  normal  normal  0.727084 
 
 
-
 
NC_010172  Mext_2174  regulatory protein MarR  49.61 
 
 
154 aa  136  1e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.363681 
 
 
-
 
NC_011757  Mchl_2452  transcriptional regulator, MarR family  49.61 
 
 
154 aa  135  2e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.126734  normal 
 
 
-
 
NC_010552  BamMC406_3762  MarR family transcriptional regulator  53.66 
 
 
150 aa  135  2e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.425599  hitchhiker  0.00135953 
 
 
-
 
NC_010184  BcerKBAB4_4312  MarR family transcriptional regulator  51.59 
 
 
150 aa  135  2e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4766  transcriptional regulator, MarR family  48.61 
 
 
166 aa  135  3.0000000000000003e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.462626  n/a   
 
 
-
 
NC_010505  Mrad2831_5144  MarR family transcriptional regulator  50 
 
 
156 aa  135  3.0000000000000003e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3291  MarR family transcriptional regulator  53.23 
 
 
152 aa  134  5e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.570613  n/a   
 
 
-
 
NC_010338  Caul_1306  MarR family transcriptional regulator  54.84 
 
 
149 aa  134  6.0000000000000005e-31  Caulobacter sp. K31  Bacteria  normal  0.335381  normal  0.344824 
 
 
-
 
NC_008391  Bamb_3233  MarR family transcriptional regulator  53.66 
 
 
150 aa  134  6.0000000000000005e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.550723  normal  0.0343876 
 
 
-
 
NC_010086  Bmul_4880  MarR family transcriptional regulator  51.61 
 
 
157 aa  133  8e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.368926  hitchhiker  0.00140951 
 
 
-
 
NC_008262  CPR_1032  MarR family transcriptional regulator  47.76 
 
 
143 aa  133  9e-31  Clostridium perfringens SM101  Bacteria  normal  0.119572  n/a   
 
 
-
 
NC_008752  Aave_4271  MarR family transcriptional regulator  52.59 
 
 
156 aa  132  9.999999999999999e-31  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0653897  normal  0.661065 
 
 
-
 
NC_009077  Mjls_1203  transcriptional regulator, TrmB  55.3 
 
 
146 aa  132  1.9999999999999998e-30  Mycobacterium sp. JLS  Bacteria  normal  0.529625  normal  0.0362733 
 
 
-
 
NC_007511  Bcep18194_B2231  MarR family transcriptional regulator  52.03 
 
 
150 aa  132  1.9999999999999998e-30  Burkholderia sp. 383  Bacteria  normal  0.106154  normal  0.474897 
 
 
-
 
NC_008146  Mmcs_1176  transcriptional regulator, TrmB  55.3 
 
 
146 aa  132  1.9999999999999998e-30  Mycobacterium sp. MCS  Bacteria  normal  0.713709  n/a   
 
 
-
 
NC_008705  Mkms_1193  transcriptional regulator, TrmB  55.3 
 
 
146 aa  132  1.9999999999999998e-30  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B0649  transcriptional regulator, MarR family  51.22 
 
 
150 aa  131  3e-30  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4256  MarR family transcriptional regulator  51.61 
 
 
166 aa  131  3e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.973283 
 
 
-
 
NC_013421  Pecwa_1328  transcriptional regulator, MarR family  53.6 
 
 
149 aa  131  3.9999999999999996e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3662  MarR family transcriptional regulator  52.03 
 
 
150 aa  131  3.9999999999999996e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.485543  normal 
 
 
-
 
NC_011725  BCB4264_A4585  transcriptional regulator, MarR family  51.22 
 
 
150 aa  131  3.9999999999999996e-30  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4499  MarR family transcriptional regulator  52.03 
 
 
150 aa  131  3.9999999999999996e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.148368  n/a   
 
 
-
 
NC_008543  Bcen2424_3865  MarR family transcriptional regulator  52.03 
 
 
150 aa  131  3.9999999999999996e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0792032  normal 
 
 
-
 
NC_010623  Bphy_4410  MarR family transcriptional regulator  47.79 
 
 
176 aa  131  3.9999999999999996e-30  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5560  MarR family transcriptional regulator  53.66 
 
 
170 aa  130  5e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.813118  n/a   
 
 
-
 
NC_014210  Ndas_1936  transcriptional regulator, MarR family  54.55 
 
 
155 aa  130  5e-30  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.13089 
 
 
-
 
NC_005945  BAS4364  MarR family transcriptional regulator  50.41 
 
 
150 aa  130  6e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4200  organic hydroperoxide resistance transcriptional regulator  50.41 
 
 
150 aa  130  6e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4211  organic hydroperoxide resistance transcriptional regulator  50.41 
 
 
150 aa  130  6e-30  Bacillus cereus E33L  Bacteria  normal  0.151141  n/a   
 
 
-
 
NC_007530  GBAA_4699  MarR family transcriptional regulator  50.41 
 
 
150 aa  130  6e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2251  MarR family transcriptional regulator  51.52 
 
 
145 aa  130  6e-30  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.344689  normal  0.255238 
 
 
-
 
NC_011773  BCAH820_4554  transcriptional regulator, MarR family  50.41 
 
 
150 aa  130  6e-30  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_4558  MarR family transcriptional regulator  50.41 
 
 
150 aa  130  6.999999999999999e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1208  MarR family transcriptional regulator  47.01 
 
 
143 aa  130  6.999999999999999e-30  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0011677  n/a   
 
 
-
 
NC_012912  Dd1591_0401  transcriptional regulator, MarR family  55.65 
 
 
156 aa  130  6.999999999999999e-30  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6797  transcriptional regulator, MarR family  49.26 
 
 
150 aa  130  7.999999999999999e-30  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.0000000000341321  decreased coverage  0.0000000109708 
 
 
-
 
NC_012917  PC1_2950  transcriptional regulator, MarR family  53.6 
 
 
149 aa  130  7.999999999999999e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3619  organic hydroperoxide resistance transcriptional regulator  52.85 
 
 
162 aa  130  9e-30  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0623  MarR family transcriptional regulator  59.43 
 
 
151 aa  129  1.0000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2842  MarR family transcriptional regulator  54.78 
 
 
150 aa  129  1.0000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1207  transcriptional regulator, MarR family  53.68 
 
 
146 aa  129  1.0000000000000001e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000193075 
 
 
-
 
NC_011658  BCAH187_A4603  transcriptional regulator, MarR family  49.59 
 
 
150 aa  129  2.0000000000000002e-29  Bacillus cereus AH187  Bacteria  normal  0.221434  n/a   
 
 
-
 
NC_003910  CPS_2005  MarR family transcriptional regulator  51.82 
 
 
143 aa  128  2.0000000000000002e-29  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0108  organic hydroperoxide resistance transcriptional regulator  56.76 
 
 
152 aa  127  4.0000000000000003e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.879191 
 
 
-
 
NC_008541  Arth_1134  MarR family transcriptional regulator  54.84 
 
 
144 aa  127  4.0000000000000003e-29  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03887  transcriptional regulator MarR family  51.16 
 
 
152 aa  127  5.0000000000000004e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1578  MarR family transcriptional regulator  46.56 
 
 
141 aa  127  5.0000000000000004e-29  Shewanella sp. ANA-3  Bacteria  normal  normal  0.0267314 
 
 
-
 
NC_009656  PSPA7_2306  putative transcriptional regulator  52.42 
 
 
151 aa  127  6e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0519  transcriptional regulator, MarR family  53.6 
 
 
157 aa  127  7.000000000000001e-29  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2738  transcriptional regulator, MarR family  52.34 
 
 
156 aa  127  7.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.708856 
 
 
-
 
NC_007492  Pfl01_3980  MarR family transcriptional regulator  52.21 
 
 
153 aa  127  8.000000000000001e-29  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.436486  normal  0.638371 
 
 
-
 
NC_010678  Rpic_4745  transcriptional regulator, MarR family  54.39 
 
 
147 aa  126  1.0000000000000001e-28  Ralstonia pickettii 12J  Bacteria  normal  normal  0.427221 
 
 
-
 
NC_012857  Rpic12D_3668  transcriptional regulator, MarR family  54.39 
 
 
147 aa  126  1.0000000000000001e-28  Ralstonia pickettii 12D  Bacteria  normal  0.400003  normal  0.620653 
 
 
-
 
NC_009504  BOV_A0830  MarR family transcriptional regulator  47.01 
 
 
151 aa  126  1.0000000000000001e-28  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2661  MarR family transcriptional regulator  44.12 
 
 
145 aa  126  1.0000000000000001e-28  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00131118  n/a   
 
 
-
 
NC_010002  Daci_1196  MarR family transcriptional regulator  54.17 
 
 
155 aa  125  2.0000000000000002e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0886  MarR family transcriptional regulator  47.01 
 
 
151 aa  125  2.0000000000000002e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1910  MarR family transcriptional regulator  49.64 
 
 
152 aa  125  2.0000000000000002e-28  Pseudomonas mendocina ymp  Bacteria  normal  0.0578168  normal  0.331204 
 
 
-
 
NC_011666  Msil_2325  transcriptional regulator, MarR family  49.6 
 
 
162 aa  125  2.0000000000000002e-28  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0434242 
 
 
-
 
NC_007643  Rru_A0021  MarR family transcriptional regulator  57.94 
 
 
178 aa  125  2.0000000000000002e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_1641  transcriptional regulator, MarR family  50.81 
 
 
157 aa  125  2.0000000000000002e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  0.176874  normal 
 
 
-
 
NC_009972  Haur_1742  MarR family transcriptional regulator  48.85 
 
 
149 aa  125  2.0000000000000002e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_00880  transcriptional regulator, MarR family  57.55 
 
 
148 aa  125  3e-28  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1648  MarR family transcriptional regulator  47.68 
 
 
191 aa  124  4.0000000000000003e-28  Shewanella baltica OS185  Bacteria  normal  0.575498  n/a   
 
 
-
 
NC_009997  Sbal195_1685  MarR family transcriptional regulator  49.64 
 
 
196 aa  124  4.0000000000000003e-28  Shewanella baltica OS195  Bacteria  normal  0.402727  normal  0.628244 
 
 
-
 
NC_011992  Dtpsy_0474  transcriptional regulator, MarR family  53.49 
 
 
155 aa  124  4.0000000000000003e-28  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_32610  transcriptional regulator  47.73 
 
 
166 aa  124  5e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0590673  normal 
 
 
-
 
NC_013165  Shel_20780  transcriptional regulator, MarR family  50.76 
 
 
152 aa  124  5e-28  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4966  transcriptional regulator, MarR family  60.38 
 
 
153 aa  124  5e-28  Variovorax paradoxus S110  Bacteria  normal  0.345847  n/a   
 
 
-
 
NC_008825  Mpe_A0057  MarR family transcriptional regulator  53.54 
 
 
185 aa  124  6e-28  Methylibium petroleiphilum PM1  Bacteria  normal  0.584189  normal  0.103539 
 
 
-
 
NC_007650  BTH_II0598  MarR family transcriptional regulator  46.43 
 
 
267 aa  124  7e-28  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0483  MarR family transcriptional regulator  52.67 
 
 
151 aa  124  7e-28  Acidovorax sp. JS42  Bacteria  normal  normal  0.0397178 
 
 
-
 
NC_008726  Mvan_1524  MarR family transcriptional regulator  56.25 
 
 
149 aa  124  7e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.26569  normal 
 
 
-
 
NC_008463  PA14_27230  MarR family transcriptional regulator  52.42 
 
 
151 aa  124  8.000000000000001e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2621  MarR family transcriptional regulator  44.12 
 
 
154 aa  123  8.000000000000001e-28  Shewanella pealeana ATCC 700345  Bacteria  normal  0.276728  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0862  MarR family transcriptional regulator  48 
 
 
158 aa  123  1e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  0.182256  n/a   
 
 
-
 
NC_008784  BMASAVP1_1483  MarR family transcriptional regulator  50.43 
 
 
150 aa  122  1e-27  Burkholderia mallei SAVP1  Bacteria  normal  0.553037  n/a   
 
 
-
 
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