266 homologs were found in PanDaTox collection
for query gene Mext_3552 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_3552  regulatory protein Crp  100 
 
 
217 aa  451  1.0000000000000001e-126  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4991  CRP/FNR family transcriptional regulator  46.99 
 
 
221 aa  166  2.9999999999999998e-40  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  29.82 
 
 
226 aa  90.1  2e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  30.85 
 
 
235 aa  85.5  6e-16  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  30.65 
 
 
230 aa  85.5  6e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  30 
 
 
231 aa  84.7  0.000000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  31.58 
 
 
229 aa  81.6  0.000000000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  31.09 
 
 
250 aa  81.6  0.000000000000008  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  30.57 
 
 
250 aa  80.9  0.00000000000001  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  28.91 
 
 
242 aa  79.3  0.00000000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  31.05 
 
 
229 aa  78.6  0.00000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  34.32 
 
 
245 aa  77.8  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  28.32 
 
 
222 aa  77.4  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  29.44 
 
 
234 aa  76.6  0.0000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  30.81 
 
 
246 aa  76.3  0.0000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  29.61 
 
 
229 aa  75.9  0.0000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  31.18 
 
 
231 aa  75.5  0.0000000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  32.61 
 
 
262 aa  75.9  0.0000000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  30.91 
 
 
230 aa  75.1  0.0000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  32.4 
 
 
229 aa  74.7  0.000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  30.26 
 
 
211 aa  74.7  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  31.79 
 
 
254 aa  73.9  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  29.19 
 
 
230 aa  73.6  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  29.1 
 
 
204 aa  72.8  0.000000000004  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  28.93 
 
 
208 aa  72.8  0.000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  28.65 
 
 
243 aa  71.6  0.000000000009  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  29.1 
 
 
247 aa  69.7  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  33.77 
 
 
230 aa  70.1  0.00000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  29.07 
 
 
253 aa  69.3  0.00000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  30.16 
 
 
232 aa  69.7  0.00000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  29.79 
 
 
236 aa  68.9  0.00000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  27.94 
 
 
230 aa  68.9  0.00000000005  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  29.28 
 
 
238 aa  67.8  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  29.28 
 
 
238 aa  67.8  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  30.37 
 
 
220 aa  66.6  0.0000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  30.54 
 
 
227 aa  67  0.0000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  27.75 
 
 
229 aa  67  0.0000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  27.75 
 
 
229 aa  66.6  0.0000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  26.77 
 
 
249 aa  67.4  0.0000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  28.24 
 
 
239 aa  65.9  0.0000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  29.7 
 
 
239 aa  65.9  0.0000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  28.24 
 
 
239 aa  65.5  0.0000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  31.76 
 
 
268 aa  65.5  0.0000000006  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  28.74 
 
 
224 aa  65.5  0.0000000007  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  30.29 
 
 
229 aa  64.3  0.000000001  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  29.09 
 
 
239 aa  64.7  0.000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  25.79 
 
 
215 aa  64.3  0.000000001  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  29.89 
 
 
211 aa  64.7  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  24.75 
 
 
248 aa  63.9  0.000000002  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  32.32 
 
 
220 aa  63.2  0.000000003  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  24.71 
 
 
250 aa  62.8  0.000000004  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  23.86 
 
 
230 aa  62.4  0.000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  25.93 
 
 
244 aa  62  0.000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  25.93 
 
 
244 aa  62  0.000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  24.75 
 
 
251 aa  62  0.000000007  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  27.22 
 
 
243 aa  61.6  0.000000008  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  23.89 
 
 
250 aa  61.6  0.000000008  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  26.77 
 
 
250 aa  61.2  0.00000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  23.33 
 
 
250 aa  60.8  0.00000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  23.89 
 
 
250 aa  60.5  0.00000002  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  23.89 
 
 
250 aa  60.5  0.00000002  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  29.21 
 
 
227 aa  60.1  0.00000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  28.48 
 
 
237 aa  59.7  0.00000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  21.79 
 
 
253 aa  58.9  0.00000005  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
249 aa  58.9  0.00000006  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  24.43 
 
 
244 aa  58.5  0.00000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  23.67 
 
 
250 aa  58.5  0.00000007  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
250 aa  58.2  0.00000008  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  22.95 
 
 
254 aa  58.5  0.00000008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
250 aa  58.2  0.00000008  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
250 aa  58.2  0.00000008  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
250 aa  58.2  0.00000008  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
250 aa  58.2  0.00000008  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  26.56 
 
 
242 aa  58.2  0.00000009  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
249 aa  58.2  0.00000009  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011981  Avi_7621  transcriptional activator Crp family  25.15 
 
 
232 aa  57.8  0.0000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  26.52 
 
 
250 aa  57.8  0.0000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  22.78 
 
 
249 aa  57.8  0.0000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  27.07 
 
 
227 aa  57.8  0.0000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  27.68 
 
 
228 aa  57  0.0000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  31.28 
 
 
252 aa  57  0.0000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_009512  Pput_2462  CRP/FNR family transcriptional regulator  28.48 
 
 
243 aa  56.6  0.0000003  Pseudomonas putida F1  Bacteria  normal  0.0261424  normal  0.616621 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  22.56 
 
 
257 aa  56.6  0.0000003  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  21.54 
 
 
254 aa  55.8  0.0000005  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  25.52 
 
 
231 aa  55.8  0.0000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  22.81 
 
 
250 aa  55.5  0.0000006  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0931  fumarate/nitrate reduction transcriptional regulator  24.57 
 
 
249 aa  55.5  0.0000006  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.896198 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000006  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000006  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000006  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000006  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000007  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000007  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000007  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000007  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  25.14 
 
 
250 aa  55.1  0.0000007  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000007  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  22.81 
 
 
250 aa  55.5  0.0000007  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  27.27 
 
 
242 aa  55.1  0.0000008  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
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