266 homologs were found in PanDaTox collection
for query gene M446_4991 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_4991  CRP/FNR family transcriptional regulator  100 
 
 
221 aa  453  1.0000000000000001e-126  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3552  regulatory protein Crp  46.99 
 
 
217 aa  166  2.9999999999999998e-40  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  33.51 
 
 
262 aa  93.6  2e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  32.09 
 
 
222 aa  90.9  1e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  30.95 
 
 
235 aa  87  2e-16  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  30.41 
 
 
226 aa  82.4  0.000000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  30.6 
 
 
253 aa  78.2  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  28.87 
 
 
249 aa  77.4  0.0000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  27.84 
 
 
245 aa  76.6  0.0000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  28.87 
 
 
249 aa  76.6  0.0000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  28.87 
 
 
248 aa  75.9  0.0000000000004  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  27.78 
 
 
230 aa  76.3  0.0000000000004  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  28.72 
 
 
229 aa  75.9  0.0000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  28.11 
 
 
229 aa  75.5  0.0000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  28.11 
 
 
230 aa  75.1  0.0000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  26.23 
 
 
204 aa  74.7  0.0000000000009  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  27.32 
 
 
248 aa  73.6  0.000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  29.31 
 
 
211 aa  73.6  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  28.27 
 
 
208 aa  73.9  0.000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  29.34 
 
 
231 aa  73.9  0.000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  29.47 
 
 
247 aa  72.8  0.000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  28.35 
 
 
248 aa  72.4  0.000000000005  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  28.35 
 
 
248 aa  72.4  0.000000000005  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  27.92 
 
 
242 aa  72.4  0.000000000006  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  28.35 
 
 
248 aa  71.6  0.000000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  27.68 
 
 
242 aa  71.6  0.000000000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  27.32 
 
 
251 aa  71.2  0.00000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  27.32 
 
 
251 aa  70.9  0.00000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  27.32 
 
 
251 aa  71.2  0.00000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  27.32 
 
 
251 aa  71.2  0.00000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  27.96 
 
 
229 aa  71.6  0.00000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  27.32 
 
 
251 aa  71.2  0.00000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  27.32 
 
 
251 aa  71.2  0.00000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  27.32 
 
 
251 aa  71.2  0.00000000001  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  29.35 
 
 
211 aa  70.1  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  28.43 
 
 
254 aa  70.5  0.00000000002  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  25 
 
 
254 aa  69.7  0.00000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  27.27 
 
 
234 aa  70.1  0.00000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  27.98 
 
 
250 aa  69.7  0.00000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  27.32 
 
 
630 aa  69.7  0.00000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  29.73 
 
 
232 aa  68.9  0.00000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  27.14 
 
 
220 aa  68.9  0.00000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  27.75 
 
 
230 aa  68.9  0.00000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  27.55 
 
 
267 aa  68.2  0.0000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  29.23 
 
 
250 aa  67.8  0.0000000001  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  26.06 
 
 
229 aa  66.6  0.0000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  27.59 
 
 
231 aa  67  0.0000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  27.55 
 
 
218 aa  67  0.0000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  25.62 
 
 
227 aa  67  0.0000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  29.09 
 
 
238 aa  66.6  0.0000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  31.33 
 
 
243 aa  66.2  0.0000000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  27.13 
 
 
246 aa  66.6  0.0000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  26.7 
 
 
224 aa  66.6  0.0000000003  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  29.09 
 
 
238 aa  66.6  0.0000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  22.94 
 
 
249 aa  65.9  0.0000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  28.35 
 
 
250 aa  65.5  0.0000000005  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  29.23 
 
 
250 aa  65.9  0.0000000005  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  27.44 
 
 
229 aa  65.9  0.0000000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  27.44 
 
 
229 aa  65.9  0.0000000005  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  27.62 
 
 
310 aa  65.5  0.0000000007  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  28.27 
 
 
236 aa  64.7  0.000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  28.43 
 
 
242 aa  64.7  0.000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  24.87 
 
 
248 aa  63.9  0.000000002  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  27.89 
 
 
229 aa  63.9  0.000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_007908  Rfer_1703  Crp/FNR family transcriptional regulator  26.4 
 
 
276 aa  64.3  0.000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.0806739  n/a   
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  28.57 
 
 
239 aa  62.8  0.000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  29.17 
 
 
239 aa  62.4  0.000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  24.19 
 
 
249 aa  62.4  0.000000006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  62  0.000000006  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  21.56 
 
 
256 aa  62  0.000000007  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  23.74 
 
 
250 aa  62  0.000000007  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  29.17 
 
 
239 aa  62  0.000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  62  0.000000007  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  62  0.000000007  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  24.87 
 
 
251 aa  61.6  0.000000009  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  24.64 
 
 
231 aa  61.6  0.000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  21.97 
 
 
253 aa  60.8  0.00000001  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  23.04 
 
 
248 aa  60.8  0.00000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  26.15 
 
 
243 aa  61.2  0.00000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  24.77 
 
 
230 aa  61.6  0.00000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  26.67 
 
 
230 aa  61.2  0.00000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  26.57 
 
 
220 aa  61.6  0.00000001  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  22.84 
 
 
250 aa  61.2  0.00000001  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  26.56 
 
 
260 aa  60.5  0.00000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  26.82 
 
 
242 aa  60.5  0.00000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  22.83 
 
 
249 aa  60.8  0.00000002  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  23.04 
 
 
250 aa  60.1  0.00000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  21.56 
 
 
249 aa  60.5  0.00000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  23.47 
 
 
248 aa  60.1  0.00000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  23.96 
 
 
224 aa  59.7  0.00000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  22.22 
 
 
250 aa  59.7  0.00000004  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  25.44 
 
 
227 aa  59.3  0.00000005  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  25.9 
 
 
239 aa  58.9  0.00000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  26.29 
 
 
241 aa  58.9  0.00000005  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  24.27 
 
 
248 aa  59.3  0.00000005  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  58.9  0.00000006  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  58.9  0.00000006  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  24.86 
 
 
215 aa  58.9  0.00000006  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  58.9  0.00000006  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  58.9  0.00000006  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
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