More than 300 homologs were found in PanDaTox collection
for query gene Rfer_1703 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_1703  Crp/FNR family transcriptional regulator  100 
 
 
276 aa  565  1e-160  Rhodoferax ferrireducens T118  Bacteria  normal  0.0806739  n/a   
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  59.84 
 
 
274 aa  312  3.9999999999999997e-84  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  59.55 
 
 
272 aa  312  3.9999999999999997e-84  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  57.03 
 
 
262 aa  283  3.0000000000000004e-75  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  48.9 
 
 
242 aa  230  2e-59  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  48.9 
 
 
247 aa  230  2e-59  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  48.5 
 
 
265 aa  229  5e-59  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  46.35 
 
 
246 aa  227  1e-58  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  46.69 
 
 
262 aa  226  4e-58  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  47.66 
 
 
245 aa  224  1e-57  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  49.17 
 
 
269 aa  224  2e-57  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  46.98 
 
 
239 aa  221  8e-57  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  47.79 
 
 
247 aa  219  3e-56  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  44.94 
 
 
248 aa  219  3.9999999999999997e-56  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  44.53 
 
 
248 aa  218  6e-56  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  44.53 
 
 
248 aa  218  6e-56  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  45.45 
 
 
242 aa  217  2e-55  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  44.53 
 
 
248 aa  217  2e-55  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  44.05 
 
 
251 aa  216  2e-55  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  44.18 
 
 
249 aa  214  9e-55  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  44.53 
 
 
248 aa  214  9e-55  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  44.05 
 
 
232 aa  214  9e-55  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  44.05 
 
 
232 aa  214  9.999999999999999e-55  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  45.33 
 
 
242 aa  213  1.9999999999999998e-54  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  45.33 
 
 
242 aa  213  2.9999999999999995e-54  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  44.72 
 
 
249 aa  213  2.9999999999999995e-54  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  45.02 
 
 
256 aa  211  1e-53  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  45.02 
 
 
256 aa  209  5e-53  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  45.98 
 
 
260 aa  209  6e-53  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  41.6 
 
 
259 aa  208  8e-53  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  41.6 
 
 
259 aa  208  8e-53  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  43.9 
 
 
257 aa  208  1e-52  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  45.33 
 
 
251 aa  207  2e-52  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  45.33 
 
 
630 aa  207  2e-52  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  45.33 
 
 
251 aa  207  2e-52  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  45.33 
 
 
251 aa  207  2e-52  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  45.33 
 
 
251 aa  207  2e-52  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  44.03 
 
 
403 aa  207  2e-52  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  45.33 
 
 
251 aa  207  2e-52  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  45.33 
 
 
251 aa  207  2e-52  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  43.5 
 
 
257 aa  207  2e-52  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  45.33 
 
 
251 aa  206  3e-52  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  41.2 
 
 
259 aa  206  4e-52  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  45.54 
 
 
260 aa  205  7e-52  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  45.54 
 
 
260 aa  205  7e-52  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  45.54 
 
 
260 aa  205  7e-52  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  43.88 
 
 
257 aa  205  7e-52  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  45.54 
 
 
260 aa  205  7e-52  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  45.54 
 
 
242 aa  204  9e-52  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  45.54 
 
 
242 aa  204  9e-52  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  41.77 
 
 
267 aa  203  2e-51  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  42.86 
 
 
254 aa  203  3e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  45.49 
 
 
264 aa  203  3e-51  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  40.8 
 
 
259 aa  202  5e-51  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  41.27 
 
 
266 aa  202  6e-51  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  44 
 
 
259 aa  201  9e-51  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  44 
 
 
259 aa  201  9e-51  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  44 
 
 
259 aa  201  9e-51  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  42.62 
 
 
257 aa  201  9.999999999999999e-51  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  43.11 
 
 
260 aa  201  9.999999999999999e-51  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  43.75 
 
 
261 aa  201  9.999999999999999e-51  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  45.95 
 
 
223 aa  201  9.999999999999999e-51  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  45.21 
 
 
224 aa  201  9.999999999999999e-51  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  40.39 
 
 
257 aa  200  1.9999999999999998e-50  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  47.2 
 
 
261 aa  200  1.9999999999999998e-50  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  47.2 
 
 
261 aa  200  1.9999999999999998e-50  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  42.08 
 
 
259 aa  199  3.9999999999999996e-50  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  42.22 
 
 
259 aa  198  6e-50  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  39.75 
 
 
250 aa  198  7e-50  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  41.48 
 
 
250 aa  197  2.0000000000000003e-49  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  39.34 
 
 
248 aa  196  3e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  40.36 
 
 
250 aa  196  4.0000000000000005e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  43.58 
 
 
218 aa  195  6e-49  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  38.68 
 
 
249 aa  195  7e-49  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_008709  Ping_0931  fumarate/nitrate reduction transcriptional regulator  40.72 
 
 
249 aa  194  1e-48  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.896198 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  38.93 
 
 
248 aa  194  1e-48  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  40.45 
 
 
249 aa  194  2e-48  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  43.5 
 
 
247 aa  194  2e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  40.27 
 
 
250 aa  194  2e-48  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  40.74 
 
 
250 aa  192  5e-48  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  40.74 
 
 
250 aa  192  5e-48  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  40.17 
 
 
250 aa  192  6e-48  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  40.72 
 
 
252 aa  191  1e-47  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  39.75 
 
 
250 aa  190  2e-47  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  39.75 
 
 
250 aa  190  2e-47  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  39.75 
 
 
250 aa  190  2e-47  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  39.75 
 
 
250 aa  190  2e-47  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  39.75 
 
 
250 aa  190  2e-47  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  38.26 
 
 
249 aa  189  4e-47  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  40.27 
 
 
250 aa  189  4e-47  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  40.28 
 
 
254 aa  188  7e-47  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  41.52 
 
 
250 aa  188  8e-47  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_007973  Rmet_1692  Crp/FNR family transcriptional regulator  42.41 
 
 
244 aa  188  8e-47  Cupriavidus metallidurans CH34  Bacteria  normal  0.816346  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  39.3 
 
 
250 aa  187  1e-46  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  39.3 
 
 
250 aa  187  1e-46  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  39.3 
 
 
250 aa  188  1e-46  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  41.2 
 
 
257 aa  186  3e-46  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  39.46 
 
 
250 aa  186  5e-46  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  40.28 
 
 
250 aa  186  5e-46  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  39.46 
 
 
250 aa  186  5e-46  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
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