More than 300 homologs were found in PanDaTox collection
for query gene M446_3512 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_3512  short-chain dehydrogenase/reductase SDR  100 
 
 
219 aa  433  1e-121  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1148  short-chain dehydrogenase/reductase SDR  60.47 
 
 
217 aa  284  8e-76  Methylobacillus flagellatus KT  Bacteria  normal  0.0937479  normal  0.693303 
 
 
-
 
NC_013946  Mrub_2663  short-chain dehydrogenase/reductase SDR  41.94 
 
 
223 aa  160  2e-38  Meiothermus ruber DSM 1279  Bacteria  normal  0.0806926  normal  0.0269236 
 
 
-
 
NC_013595  Sros_7237  short-chain dehydrogenase/reductase SDR  43.52 
 
 
219 aa  140  1.9999999999999998e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.154876 
 
 
-
 
NC_008148  Rxyl_3013  short-chain dehydrogenase/reductase SDR  37.78 
 
 
236 aa  134  8e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2901  short-chain dehydrogenase/reductase SDR  33.62 
 
 
243 aa  109  4.0000000000000004e-23  Pseudomonas putida GB-1  Bacteria  normal  0.997812  normal 
 
 
-
 
NC_010501  PputW619_2385  short-chain dehydrogenase/reductase SDR  33.62 
 
 
243 aa  108  5e-23  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2881  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
243 aa  108  9.000000000000001e-23  Pseudomonas putida KT2440  Bacteria  normal  0.959841  normal  0.948307 
 
 
-
 
NC_007348  Reut_B4725  Short-chain dehydrogenase/reductase SDR  34.2 
 
 
246 aa  107  1e-22  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2625  short-chain dehydrogenase/reductase SDR  32.61 
 
 
243 aa  107  1e-22  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.720898 
 
 
-
 
NC_009512  Pput_2809  short-chain dehydrogenase/reductase SDR  33.62 
 
 
243 aa  107  1e-22  Pseudomonas putida F1  Bacteria  normal  0.477245  normal  0.933916 
 
 
-
 
NC_007492  Pfl01_3907  Short-chain dehydrogenase/reductase SDR  32.91 
 
 
242 aa  102  4e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.180445  normal 
 
 
-
 
NC_012791  Vapar_0817  short-chain dehydrogenase/reductase SDR  33.47 
 
 
270 aa  101  7e-21  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6063  Short-chain dehydrogenase/reductase SDR  32.91 
 
 
244 aa  101  7e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010815  Glov_3712  short-chain dehydrogenase/reductase SDR  31.74 
 
 
244 aa  98.6  6e-20  Geobacter lovleyi SZ  Bacteria  normal  normal  0.0912876 
 
 
-
 
NC_007777  Francci3_0944  short-chain dehydrogenase/reductase SDR  33.97 
 
 
268 aa  96.7  2e-19  Frankia sp. CcI3  Bacteria  normal  0.0441553  normal  0.118759 
 
 
-
 
NC_009921  Franean1_5597  short-chain dehydrogenase/reductase SDR  32.21 
 
 
244 aa  96.7  3e-19  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00241343  normal  0.0182886 
 
 
-
 
NC_010581  Bind_3591  short-chain dehydrogenase/reductase SDR  30.49 
 
 
233 aa  95.5  5e-19  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.286182  normal 
 
 
-
 
NC_007413  Ava_4758  Short-chain dehydrogenase/reductase SDR  29.2 
 
 
229 aa  95.5  5e-19  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000972291  normal 
 
 
-
 
NC_007336  Reut_C6052  Short-chain dehydrogenase/reductase SDR  29.57 
 
 
244 aa  95.5  6e-19  Ralstonia eutropha JMP134  Bacteria  normal  0.110774  n/a   
 
 
-
 
BN001306  ANIA_03293  conserved hypothetical protein  29.54 
 
 
264 aa  94.4  1e-18  Aspergillus nidulans FGSC A4  Eukaryota  normal  hitchhiker  0.00545103 
 
 
-
 
NC_013521  Sked_20330  short-chain dehydrogenase of unknown substrate specificity  30.69 
 
 
221 aa  94.4  1e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.389925  normal  0.158335 
 
 
-
 
NC_010002  Daci_5357  short-chain dehydrogenase/reductase SDR  29.18 
 
 
242 aa  94  1e-18  Delftia acidovorans SPH-1  Bacteria  normal  0.735069  normal 
 
 
-
 
NC_012792  Vapar_5354  short-chain dehydrogenase/reductase SDR  29.57 
 
 
246 aa  94.4  1e-18  Variovorax paradoxus S110  Bacteria  normal  0.495414  n/a   
 
 
-
 
NC_010676  Bphyt_5693  short-chain dehydrogenase/reductase SDR  31.72 
 
 
232 aa  94.4  1e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.406883 
 
 
-
 
NC_009720  Xaut_2437  short-chain dehydrogenase/reductase SDR  32.37 
 
 
255 aa  94.4  1e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4178  short-chain dehydrogenase/reductase SDR  33.78 
 
 
233 aa  94.4  1e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.585089  normal  0.589272 
 
 
-
 
NC_009720  Xaut_4300  short-chain dehydrogenase/reductase SDR  31.14 
 
 
231 aa  93.6  2e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7134  putative 3-oxoacyl-(acyl-carrier-protein) reductase  30.8 
 
 
233 aa  92.8  4e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.269687  normal 
 
 
-
 
NC_013743  Htur_2193  short-chain dehydrogenase/reductase SDR  31.88 
 
 
233 aa  91.7  7e-18  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010172  Mext_3869  short-chain dehydrogenase/reductase SDR  32 
 
 
233 aa  90.5  2e-17  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0675753 
 
 
-
 
NC_007413  Ava_2536  short chain dehydrogenase  30.96 
 
 
241 aa  89.7  3e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4742  short-chain dehydrogenase/reductase SDR  34.57 
 
 
242 aa  89.7  3e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.135595  normal  0.744613 
 
 
-
 
NC_011677  PHATRDRAFT_20677  predicted protein  28.82 
 
 
236 aa  87.4  1e-16  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.732911  n/a   
 
 
-
 
NC_012848  Rleg_4853  short-chain dehydrogenase/reductase SDR  32.58 
 
 
248 aa  87  2e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.154391  normal  0.241568 
 
 
-
 
NC_013131  Caci_4647  short-chain dehydrogenase/reductase SDR  32.45 
 
 
236 aa  87.4  2e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.185933  normal  0.400041 
 
 
-
 
NC_010725  Mpop_4325  short-chain dehydrogenase/reductase SDR  32.89 
 
 
233 aa  87.4  2e-16  Methylobacterium populi BJ001  Bacteria  normal  0.32958  normal 
 
 
-
 
NC_009656  PSPA7_0192  putative short chain dehydrogenase  27.04 
 
 
242 aa  86.7  3e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0796  short-chain dehydrogenase/reductase SDR  31.46 
 
 
281 aa  85.9  4e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.35999 
 
 
-
 
NC_006349  BMAA0714  short chain dehydrogenase/reductase family oxidoreductase  29.66 
 
 
258 aa  85.1  8e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0749  short chain dehydrogenase/reductase family oxidoreductase  29.66 
 
 
258 aa  85.1  8e-16  Burkholderia mallei NCTC 10229  Bacteria  normal  0.66118  n/a   
 
 
-
 
NC_009079  BMA10247_A1712  short chain dehydrogenase/reductase family oxidoreductase  29.66 
 
 
258 aa  85.1  8e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  0.595621  n/a   
 
 
-
 
NC_009484  Acry_1425  short-chain dehydrogenase/reductase SDR  32.16 
 
 
236 aa  84.3  0.000000000000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4614  short-chain dehydrogenase/reductase SDR  34.16 
 
 
250 aa  84.7  0.000000000000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3638  short-chain dehydrogenase/reductase SDR  32.11 
 
 
265 aa  84.3  0.000000000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.593617  normal  0.680535 
 
 
-
 
NC_014158  Tpau_2164  short-chain dehydrogenase/reductase SDR  32.42 
 
 
239 aa  83.6  0.000000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.551521  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2436  short chain dehydrogenase/reductase family oxidoreductase  29.24 
 
 
292 aa  84  0.000000000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1240  short chain dehydrogenase/reductase family oxidoreductase  29.24 
 
 
258 aa  84  0.000000000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5793  short-chain dehydrogenase/reductase SDR  32.62 
 
 
237 aa  83.6  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1166  short chain dehydrogenase/reductase family oxidoreductase  29.24 
 
 
253 aa  84  0.000000000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.932986  n/a   
 
 
-
 
NC_014248  Aazo_3368  short-chain dehydrogenase/reductase SDR  31.47 
 
 
241 aa  83.2  0.000000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.119808  n/a   
 
 
-
 
NC_007952  Bxe_B1429  putative short chain dehydrogenase  28.37 
 
 
255 aa  82.8  0.000000000000004  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0142778 
 
 
-
 
NC_012560  Avin_16490  Short-chain dehydrogenase/reductase SDR  33.51 
 
 
263 aa  82.4  0.000000000000005  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0608  short-chain dehydrogenase/reductase SDR  30.33 
 
 
257 aa  82  0.000000000000007  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.600374  normal 
 
 
-
 
NC_013525  Tter_0451  short-chain dehydrogenase/reductase SDR  32.45 
 
 
339 aa  82  0.000000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009719  Plav_3651  short-chain dehydrogenase/reductase SDR  26.52 
 
 
242 aa  81.6  0.000000000000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.100527  hitchhiker  0.00000000000000573842 
 
 
-
 
NC_007953  Bxe_C0125  putative short-chain dehydrogenase  28.37 
 
 
251 aa  81.6  0.000000000000008  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_01430  putative short chain dehydrogenase  26.18 
 
 
242 aa  81.3  0.000000000000009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0211  short-chain dehydrogenase/reductase SDR  30.8 
 
 
233 aa  80.9  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1173  short-chain dehydrogenase/reductase SDR  30.77 
 
 
256 aa  81.3  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.0283651  n/a   
 
 
-
 
NC_009523  RoseRS_1481  short-chain dehydrogenase/reductase SDR  32.82 
 
 
239 aa  80.1  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.175599  normal 
 
 
-
 
NC_010087  Bmul_5439  short-chain dehydrogenase/reductase SDR  30.81 
 
 
249 aa  80.1  0.00000000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.012898 
 
 
-
 
NC_010505  Mrad2831_0073  short-chain dehydrogenase/reductase SDR  32.3 
 
 
234 aa  79.3  0.00000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.623849  normal 
 
 
-
 
NC_008060  Bcen_0158  short-chain dehydrogenase/reductase SDR  29.86 
 
 
257 aa  79.3  0.00000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009427  Saro_3707  short-chain dehydrogenase/reductase SDR  30.3 
 
 
267 aa  79.3  0.00000000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0641  short-chain dehydrogenase/reductase SDR  29.86 
 
 
257 aa  79.3  0.00000000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3225  short-chain dehydrogenase/reductase SDR  32.57 
 
 
240 aa  79  0.00000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  0.956493  n/a   
 
 
-
 
NC_002947  PP_1745  short chain dehydrogenase  29.67 
 
 
269 aa  79  0.00000000000005  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0404  short-chain dehydrogenase/reductase SDR  31.41 
 
 
236 aa  79  0.00000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.733694  normal  0.573614 
 
 
-
 
NC_007650  BTH_II1562  short chain dehydrogenase/reductase family oxidoreductase  27.85 
 
 
278 aa  79  0.00000000000005  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3453  short-chain dehydrogenase/reductase SDR  29.55 
 
 
267 aa  79  0.00000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  0.282255  normal 
 
 
-
 
NC_008048  Sala_0501  short-chain dehydrogenase/reductase SDR  29.27 
 
 
243 aa  79  0.00000000000006  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.824433 
 
 
-
 
NC_007510  Bcep18194_A3725  Short-chain dehydrogenase/reductase SDR  29.38 
 
 
269 aa  78.6  0.00000000000007  Burkholderia sp. 383  Bacteria  normal  0.725023  normal  0.155936 
 
 
-
 
NC_007413  Ava_0943  Short-chain dehydrogenase/reductase SDR  28.57 
 
 
293 aa  78.2  0.00000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008544  Bcen2424_6443  short-chain dehydrogenase/reductase SDR  29.73 
 
 
259 aa  78.2  0.00000000000008  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0150364  normal 
 
 
-
 
NC_013526  Tter_2271  short-chain dehydrogenase/reductase SDR  28.86 
 
 
257 aa  78.2  0.00000000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1386  short-chain dehydrogenase/reductase SDR  29.73 
 
 
251 aa  78.2  0.00000000000009  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
BN001306  ANIA_02694  oxidoreductase, short chain dehydrogenase/reductase family (AFU_orthologue; AFUA_5G14000)  25.85 
 
 
243 aa  77.8  0.0000000000001  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6034  short-chain dehydrogenase/reductase SDR  29.73 
 
 
249 aa  78.2  0.0000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311099  normal  0.357873 
 
 
-
 
NC_007005  Psyr_0194  Short-chain dehydrogenase/reductase SDR  33.85 
 
 
244 aa  77.8  0.0000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1337  short chain dehydrogenase  30.68 
 
 
269 aa  78.2  0.0000000000001  Pseudomonas putida GB-1  Bacteria  normal  normal  0.950533 
 
 
-
 
NC_010623  Bphy_4238  short chain dehydrogenase  29.47 
 
 
268 aa  77.8  0.0000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2771  short chain dehydrogenase  33.14 
 
 
253 aa  78.2  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1295  short chain dehydrogenase  29.67 
 
 
271 aa  77.8  0.0000000000001  Pseudomonas putida W619  Bacteria  normal  0.657463  normal 
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  34.46 
 
 
269 aa  77.8  0.0000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0235  short-chain dehydrogenase/reductase SDR  31.09 
 
 
244 aa  77.4  0.0000000000002  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0022  short-chain dehydrogenase/reductase SDR  27.43 
 
 
245 aa  77  0.0000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1609  short-chain dehydrogenase/reductase SDR  33.51 
 
 
253 aa  77  0.0000000000002  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.000418477  normal 
 
 
-
 
NC_009485  BBta_0314  putative acetoin(diacetyl) reductase  26.58 
 
 
245 aa  77  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.417582  normal  0.615312 
 
 
-
 
NC_007005  Psyr_0904  Short-chain dehydrogenase/reductase SDR  32.88 
 
 
254 aa  76.6  0.0000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4610  short-chain dehydrogenase/reductase SDR  34.83 
 
 
261 aa  77  0.0000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5150  putative short-chain dehydrogenase/reductase SDR  26.58 
 
 
245 aa  77  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.855408  normal  0.11304 
 
 
-
 
NC_009512  Pput_3969  short chain dehydrogenase  29.67 
 
 
269 aa  77  0.0000000000002  Pseudomonas putida F1  Bacteria  normal  normal  0.246181 
 
 
-
 
NC_007973  Rmet_3057  3-oxoacyl-[acyl-carrier-protein] reductase  33.15 
 
 
246 aa  77.4  0.0000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.030998  normal 
 
 
-
 
NC_007974  Rmet_4197  short-chain dehydrogenase/reductase SDR  27.2 
 
 
298 aa  77  0.0000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.18326  normal 
 
 
-
 
NC_008527  LACR_1627  oxidoreductase  26.82 
 
 
255 aa  77.4  0.0000000000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3356  short-chain dehydrogenase/reductase SDR  28.84 
 
 
218 aa  77.4  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  0.933468  n/a   
 
 
-
 
NC_013595  Sros_9335  short-chain dehydrogenase/reductase SDR  29.47 
 
 
250 aa  77.4  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.728753  normal  0.802866 
 
 
-
 
NC_010335  Caul_5258  short-chain dehydrogenase/reductase SDR  28.09 
 
 
247 aa  76.3  0.0000000000003  Caulobacter sp. K31  Bacteria  normal  hitchhiker  0.000237685 
 
 
-
 
NC_007925  RPC_0017  short-chain dehydrogenase/reductase SDR  27.43 
 
 
245 aa  76.6  0.0000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
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