| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3651 |
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| Symbol | |
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| ID | 5456520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3905394 |
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| End bp | 3906122 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640879235 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001414906 |
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| Protein GI | 154254082 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.100527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00000000000000573842 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCGAGC GGAAAGCGGC AATCGTGATC GGAGCCGGCG ATGCGACCGG CGGGGCCATC
GCCAGACGAT TCGCGAAGGG GGGATATGTC GCCTGCGTGA CCAGGCGCTC GGAAGAAAAA
CTTGTCCCCC TCCTCGACCA GATCAGATCC GAGGGCGGCG AGGCGCGCGG CTTCGGATCG
GACGCGCGGA AGGAGGAGGA GGTCGCCGAC CTCTTCGCGA CGGTGGAGCG CGAGGTGGGG
CCCGTCGAGG TGATGGTCTT CAATATCGGC GCCAATGTGA ATTTCCCGAT CCTCGAAATG
ACGGAGCGGG TTTACCGCAA GGTCTGGGAG ATGGCGGCCT ATTCCGGCTT CCTCACCGGA
CGCGAGGCGG CGCGCGTCAT GGTACCGAGG GGCAAGGGGA CGATCATCTT TACCGGCGCG
ACGGCAAGCC TTCGCGGCGG CTCCGGGTTC AGCGCCTTTG CGGGCGCGAA ATTCGCGTTG
CGCGCGCTCG CCCAGAGCAT GGCGCGGGAG CTGGGGCCGA AGGGCATCCA TGTCGCGCAT
CCGATCATCG ATGGCGCGAT CGACACGGCC TTCATTCGCG ACACATTTCC CGAACGCTAC
AAGCTGAAGG AAGAGGACGG GATCTTGAAT CCCGACCACA TTGCCGAGAT GTATTGGCAG
CTCCACATGC AGCCGCGCGA CGCCTGGACG CATGAGCTCG ACCTCAGGCC CTGGATGGAA
ACTTTCTGA
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| Protein sequence | MGERKAAIVI GAGDATGGAI ARRFAKGGYV ACVTRRSEEK LVPLLDQIRS EGGEARGFGS
DARKEEEVAD LFATVEREVG PVEVMVFNIG ANVNFPILEM TERVYRKVWE MAAYSGFLTG
REAARVMVPR GKGTIIFTGA TASLRGGSGF SAFAGAKFAL RALAQSMARE LGPKGIHVAH
PIIDGAIDTA FIRDTFPERY KLKEEDGILN PDHIAEMYWQ LHMQPRDAWT HELDLRPWME
TF
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