More than 300 homologs were found in PanDaTox collection
for query gene BBta_5935 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_5935  FixR protein  100 
 
 
282 aa  578  1e-164  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.415665  normal 
 
 
-
 
NC_007925  RPC_4476  short-chain dehydrogenase/reductase SDR  71.74 
 
 
306 aa  416  9.999999999999999e-116  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.487588 
 
 
-
 
NC_011004  Rpal_5114  short-chain dehydrogenase/reductase SDR  72.43 
 
 
273 aa  412  1e-114  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0956  Short-chain dehydrogenase/reductase SDR  72.12 
 
 
290 aa  402  1e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1060  short-chain dehydrogenase/reductase SDR  72.18 
 
 
312 aa  401  1e-111  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3545  short-chain dehydrogenase/reductase SDR  66.39 
 
 
265 aa  344  8.999999999999999e-94  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0113148 
 
 
-
 
NC_009667  Oant_0130  short-chain dehydrogenase/reductase SDR  62.79 
 
 
263 aa  329  4e-89  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0116  short chain dehydrogenase/reductase family oxidoreductase  64.37 
 
 
268 aa  326  3e-88  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0113  short chain dehydrogenase/reductase family oxidoreductase  62.65 
 
 
268 aa  324  8.000000000000001e-88  Brucella ovis ATCC 25840  Bacteria  normal  0.0686594  n/a   
 
 
-
 
NC_007778  RPB_1204  Short-chain dehydrogenase/reductase  62.3 
 
 
258 aa  322  4e-87  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1135  short-chain dehydrogenase/reductase SDR  62.55 
 
 
262 aa  322  6e-87  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.768597 
 
 
-
 
NC_009485  BBta_2462  short-chain dehydrogenase  63.37 
 
 
251 aa  320  1.9999999999999998e-86  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1388  short-chain dehydrogenase/reductase SDR  62.96 
 
 
258 aa  318  3.9999999999999996e-86  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0764  short-chain dehydrogenase/reductase SDR  61.57 
 
 
264 aa  318  5e-86  Nitrobacter hamburgensis X14  Bacteria  normal  0.145907  n/a   
 
 
-
 
NC_007406  Nwi_0621  Short-chain dehydrogenase/reductase SDR  62.55 
 
 
263 aa  318  7.999999999999999e-86  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.167858  normal 
 
 
-
 
NC_007958  RPD_1306  short-chain dehydrogenase/reductase SDR  62.5 
 
 
239 aa  316  2e-85  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0795  short-chain dehydrogenase/reductase SDR  62.35 
 
 
251 aa  314  9e-85  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.347308 
 
 
-
 
NC_008254  Meso_3987  short-chain dehydrogenase/reductase SDR  63.01 
 
 
256 aa  314  9.999999999999999e-85  Chelativorans sp. BNC1  Bacteria  normal  0.262642  n/a   
 
 
-
 
NC_009049  Rsph17029_2728  short-chain dehydrogenase/reductase SDR  61.48 
 
 
243 aa  313  1.9999999999999998e-84  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0711669 
 
 
-
 
NC_009428  Rsph17025_2866  short-chain dehydrogenase/reductase SDR  61.07 
 
 
243 aa  312  4.999999999999999e-84  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1067  Short-chain alcohol dehydrogenase  61.07 
 
 
258 aa  309  2.9999999999999997e-83  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.71076  n/a   
 
 
-
 
NC_009952  Dshi_0325  3-ketoacyl-(acyl-carrier-protein) reductase  60.82 
 
 
243 aa  308  5e-83  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.992211 
 
 
-
 
NC_008044  TM1040_0302  short-chain dehydrogenase/reductase SDR  59.26 
 
 
243 aa  303  3.0000000000000004e-81  Ruegeria sp. TM1040  Bacteria  normal  0.198401  normal 
 
 
-
 
NC_009720  Xaut_2477  short-chain dehydrogenase/reductase SDR  60.33 
 
 
249 aa  301  7.000000000000001e-81  Xanthobacter autotrophicus Py2  Bacteria  normal  0.449608  normal  0.117901 
 
 
-
 
NC_010505  Mrad2831_3982  short-chain dehydrogenase/reductase SDR  58.8 
 
 
251 aa  301  1e-80  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437087  decreased coverage  0.00119468 
 
 
-
 
NC_008463  PA14_68040  putative short-chain dehydrogenase  58.61 
 
 
245 aa  300  2e-80  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.915385  normal  0.0126935 
 
 
-
 
NC_010725  Mpop_4815  short-chain dehydrogenase/reductase SDR  59.92 
 
 
240 aa  299  3e-80  Methylobacterium populi BJ001  Bacteria  normal  0.0328303  normal  0.0791888 
 
 
-
 
NC_010172  Mext_4297  short-chain dehydrogenase/reductase SDR  59.18 
 
 
250 aa  297  2e-79  Methylobacterium extorquens PA1  Bacteria  normal  0.97771  normal 
 
 
-
 
NC_011757  Mchl_4666  short-chain dehydrogenase/reductase SDR  59.18 
 
 
250 aa  297  2e-79  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.307403 
 
 
-
 
NC_009656  PSPA7_5888  putative short-chain dehydrogenase  58.2 
 
 
245 aa  297  2e-79  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1067  short-chain dehydrogenase/reductase SDR  58.37 
 
 
251 aa  296  3e-79  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.186426  n/a   
 
 
-
 
NC_004578  PSPTO_4082  oxidoreductase, short chain dehydrogenase/reductase family  56.56 
 
 
244 aa  290  2e-77  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.858342  n/a   
 
 
-
 
NC_007005  Psyr_3821  Short-chain dehydrogenase/reductase SDR  56.56 
 
 
244 aa  290  2e-77  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00400497 
 
 
-
 
NC_013421  Pecwa_2540  short-chain dehydrogenase/reductase SDR  57.55 
 
 
244 aa  286  2.9999999999999996e-76  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0960196  n/a   
 
 
-
 
NC_012880  Dd703_1274  short-chain dehydrogenase/reductase SDR  55.92 
 
 
244 aa  285  7e-76  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2226  short-chain dehydrogenase/reductase SDR  57.55 
 
 
244 aa  282  4.0000000000000003e-75  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2512  3-oxoacyl-(acyl-carrier-protein) reductase  52.26 
 
 
242 aa  249  4e-65  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6893  putative 3-oxoacyl-(acyl-carrier-protein) reductase  38.8 
 
 
266 aa  150  2e-35  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00227102  normal  0.0503904 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  38.49 
 
 
261 aa  149  5e-35  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_4822  short-chain dehydrogenase/reductase SDR  35.8 
 
 
253 aa  144  1e-33  Paracoccus denitrificans PD1222  Bacteria  normal  0.237012  normal  0.451819 
 
 
-
 
NC_010505  Mrad2831_3742  short-chain dehydrogenase/reductase SDR  37.5 
 
 
260 aa  139  4.999999999999999e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.071685 
 
 
-
 
NC_010505  Mrad2831_0334  3-ketoacyl-(acyl-carrier-protein) reductase  37.69 
 
 
268 aa  138  1e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1300  short-chain dehydrogenase/reductase SDR  36.33 
 
 
262 aa  136  4e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0620  3-oxoacyl-[acyl-carrier-protein] reductase  35.39 
 
 
250 aa  136  4e-31  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.890979 
 
 
-
 
NC_010511  M446_1803  short-chain dehydrogenase/reductase SDR  37.65 
 
 
262 aa  135  8e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.225984 
 
 
-
 
NC_011894  Mnod_1178  short-chain dehydrogenase/reductase SDR  37.65 
 
 
262 aa  134  9.999999999999999e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1575  short chain dehydrogenase  37.15 
 
 
249 aa  133  3e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_2459  short-chain dehydrogenase/reductase SDR  36.22 
 
 
264 aa  132  6e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2361  short-chain dehydrogenase/reductase SDR  38.65 
 
 
258 aa  131  1.0000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.11166  n/a   
 
 
-
 
NC_010511  M446_1734  short-chain dehydrogenase/reductase SDR  35.97 
 
 
275 aa  131  1.0000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6018  3-oxoacyl-[acyl-carrier-protein] reductase  33.86 
 
 
247 aa  130  2.0000000000000002e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2737  3-oxoacyl-(acyl-carrier-protein) reductase  36.22 
 
 
249 aa  130  2.0000000000000002e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.277769  normal 
 
 
-
 
NC_011894  Mnod_3752  3-ketoacyl-(acyl-carrier-protein) reductase  35.88 
 
 
268 aa  130  3e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  34.4 
 
 
262 aa  129  4.0000000000000003e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_007778  RPB_4257  Short-chain dehydrogenase/reductase SDR  34.9 
 
 
262 aa  129  5.0000000000000004e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0797349  normal 
 
 
-
 
NC_009616  Tmel_1835  3-oxoacyl-(acyl-carrier-protein) reductase  34 
 
 
244 aa  129  8.000000000000001e-29  Thermosipho melanesiensis BI429  Bacteria  normal  0.686329  n/a   
 
 
-
 
NC_009429  Rsph17025_3588  hypothetical protein  36.92 
 
 
254 aa  128  9.000000000000001e-29  Rhodobacter sphaeroides ATCC 17025  Bacteria  decreased coverage  0.00208776  normal  0.410255 
 
 
-
 
NC_011891  A2cp1_2932  3-oxoacyl-(acyl-carrier-protein) reductase  35.83 
 
 
250 aa  127  2.0000000000000002e-28  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  34.66 
 
 
246 aa  127  2.0000000000000002e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_007643  Rru_A0273  3-oxoacyl-[acyl-carrier-protein] reductase  32.53 
 
 
242 aa  127  2.0000000000000002e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2840  3-oxoacyl-(acyl-carrier-protein) reductase  35.83 
 
 
250 aa  127  2.0000000000000002e-28  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_1094  short-chain dehydrogenase/reductase SDR  35.6 
 
 
257 aa  127  2.0000000000000002e-28  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_012792  Vapar_5342  acetoacetyl-CoA reductase  31.37 
 
 
251 aa  127  2.0000000000000002e-28  Variovorax paradoxus S110  Bacteria  normal  0.684648  n/a   
 
 
-
 
NC_011894  Mnod_3437  short-chain dehydrogenase/reductase SDR  35.29 
 
 
262 aa  127  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0122  short-chain dehydrogenase/reductase SDR  35.51 
 
 
224 aa  126  4.0000000000000003e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2799  3-oxoacyl-(acyl-carrier-protein) reductase  35.94 
 
 
246 aa  126  4.0000000000000003e-28  Salinispora tropica CNB-440  Bacteria  normal  0.786413  normal 
 
 
-
 
NC_010644  Emin_0659  3-oxoacyl-(acyl-carrier-protein) reductase  30.5 
 
 
245 aa  126  4.0000000000000003e-28  Elusimicrobium minutum Pei191  Bacteria  normal  0.372694  normal 
 
 
-
 
NC_009718  Fnod_0609  short-chain dehydrogenase/reductase SDR  34.13 
 
 
232 aa  126  4.0000000000000003e-28  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.000037264  n/a   
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  35.66 
 
 
261 aa  125  6e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_009511  Swit_4599  3-oxoacyl-[acyl-carrier-protein] reductase  31.3 
 
 
240 aa  125  7e-28  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6555  acetoacetyl-CoA reductase  32.94 
 
 
247 aa  125  7e-28  Burkholderia phymatum STM815  Bacteria  normal  normal  0.660753 
 
 
-
 
NC_008146  Mmcs_4927  short-chain dehydrogenase/reductase SDR  32.92 
 
 
239 aa  125  8.000000000000001e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0095  short-chain dehydrogenase/reductase SDR  32.94 
 
 
249 aa  125  8.000000000000001e-28  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_5015  short-chain dehydrogenase/reductase SDR  32.92 
 
 
239 aa  125  8.000000000000001e-28  Mycobacterium sp. KMS  Bacteria  normal  normal  0.920793 
 
 
-
 
NC_004116  SAG0664  cylG protein  31.97 
 
 
240 aa  125  9e-28  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3232  short-chain dehydrogenase/reductase SDR  37.5 
 
 
248 aa  125  9e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0517  3-oxoacyl-(acyl-carrier-protein) reductase  34.51 
 
 
247 aa  124  1e-27  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2515  short-chain dehydrogenase/reductase SDR  35.43 
 
 
250 aa  125  1e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_2724  short-chain dehydrogenase/reductase SDR  34.94 
 
 
275 aa  125  1e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  34.68 
 
 
247 aa  124  1e-27  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_011894  Mnod_3075  short-chain dehydrogenase/reductase SDR  33.33 
 
 
261 aa  125  1e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2836  short-chain dehydrogenase/reductase SDR  33.33 
 
 
253 aa  124  1e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.194663  n/a   
 
 
-
 
NC_009504  BOV_A0339  3-ketoacyl-(acyl-carrier-protein) reductase  33.85 
 
 
265 aa  124  1e-27  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009669  Oant_4587  short-chain dehydrogenase/reductase SDR  35.46 
 
 
264 aa  124  1e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0960385  n/a   
 
 
-
 
NC_009719  Plav_0548  short-chain dehydrogenase/reductase SDR  32.68 
 
 
261 aa  124  1e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0067  short-chain dehydrogenase/reductase SDR  36.11 
 
 
254 aa  124  2e-27  Meiothermus ruber DSM 1279  Bacteria  normal  0.43127  normal  0.598293 
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  35.32 
 
 
246 aa  124  2e-27  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1879  short-chain dehydrogenase/reductase SDR  33.47 
 
 
261 aa  124  2e-27  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.828765 
 
 
-
 
NC_007575  Suden_1613  3-ketoacyl-(acyl-carrier-protein) reductase  34.66 
 
 
248 aa  124  2e-27  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_04541  3-oxoacyl-[acyl-carrier protein] reductase  34.13 
 
 
250 aa  124  2e-27  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0716484  normal 
 
 
-
 
NC_013730  Slin_1373  3-oxoacyl-(acyl-carrier-protein) reductase  34.94 
 
 
248 aa  124  2e-27  Spirosoma linguale DSM 74  Bacteria  normal  0.124306  normal 
 
 
-
 
NC_011761  AFE_2225  glucose 1-dehydrogenase, putative  33.47 
 
 
261 aa  124  2e-27  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  32.79 
 
 
260 aa  124  2e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  33.47 
 
 
239 aa  124  2e-27  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  34 
 
 
269 aa  124  2e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0396  3-ketoacyl-(acyl-carrier-protein) reductase  33.46 
 
 
265 aa  123  3e-27  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3865  3-oxoacyl-[acyl-carrier-protein] reductase  33.33 
 
 
277 aa  123  3e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1622  3-ketoacyl-(acyl-carrier-protein) reductase  42.94 
 
 
256 aa  123  3e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  0.598933  normal 
 
 
-
 
NC_007796  Mhun_3155  short-chain dehydrogenase/reductase SDR  32.94 
 
 
249 aa  123  3e-27  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007912  Sde_1629  3-oxoacyl-[acyl-carrier-protein] reductase  31.5 
 
 
247 aa  124  3e-27  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.0000000000722378  normal 
 
 
-
 
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