| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5342 |
|---|
| Symbol | |
|---|
| ID | 7975803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 46165 |
|---|
| End bp | 46920 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644795936 |
|---|
| Product | acetoacetyl-CoA reductase |
|---|
| Protein accession | YP_002947210 |
|---|
| Protein GI | 239820025 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01829] acetoacetyl-CoA reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.684648 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA GCAAGCAGCA ACAAGTGGTC CTGGTCACCG GCGGCATGGG CGGCCTGGGC
GAGACGATCT CCACCAAGAT GGTCGATGCG GGCTACAAGC TCGCGGTGAC CTATTCGCCC
GGCAACAAGT CGCACGCCGA CTGGGTCGCA CAGATGGCCG GGCGCGGCTA CCAGATCCTG
GCCGTGCCCT GCGACGTGGC CGACTACGAC TCCTGCGCAC GGGCGGTGGG CCAGGTGCAG
GAAGCCCTGG GCCCGGTCGA CGTGCTGGTC AACAACGCCG GCATCACGCG CGACATGACC
TTCAAGAAGA TGGACCAGAT CAACTGGAAC GCCGTGCTGC GCACCAACCT CGACAGCCTG
TTCAACATGA GCAAGCAGGT GGCCGACGGC ATGGTGGAGC GGGGCTGGGG CCGCATCATC
AACGTGTCGT CGGTGAACGG CTCGAAGGGT GCGTTCGGGC AGACCAACTA CTCGGCCGCC
AAGGCCGGGG TGCACGGCTT CACCAAGGCG CTGGCGCTCG AAGTGGCCAG GAAGGGCGTG
ACCGTGAACA CCATCTCGCC CGGCTACATC GGCACGAAGA TGGTCACGGC CATTCCGAAG
GAAGTGCTCG ACAGCAAGAT CCTGCCGCAC ATTCCCGTGG GGCGCCTGGG CAAGCCCGAG
GAAGTGGCGG GGCTGATCAT CTACCTGGCC TCGGAAGAGG CGGCCTTCGT GACGGGCGCC
AACATCGCCA TCAACGGCGG CCAGCACATG CAATGA
|
|---|
| Protein sequence | MSESKQQQVV LVTGGMGGLG ETISTKMVDA GYKLAVTYSP GNKSHADWVA QMAGRGYQIL
AVPCDVADYD SCARAVGQVQ EALGPVDVLV NNAGITRDMT FKKMDQINWN AVLRTNLDSL
FNMSKQVADG MVERGWGRII NVSSVNGSKG AFGQTNYSAA KAGVHGFTKA LALEVARKGV
TVNTISPGYI GTKMVTAIPK EVLDSKILPH IPVGRLGKPE EVAGLIIYLA SEEAAFVTGA
NIAINGGQHM Q
|
|---|
| |