Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1060 |
Symbol | |
ID | 4021536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1214455 |
End bp | 1215393 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637961252 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_568199 |
Protein GI | 91975540 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAAG CGATGGAGAT CGCCGTGCAC AGCGAGCCGT TGCAGGCCGA ACGGCCAGGA CATCCCGGAA GCCATGGACC GGGAAGCCAT GGACCGGGAA ACGATGGACC GGGAAACGAT GGACCAGGAA GCCACGAGCC GGGAATGCCG GCTTCCGGTG GCGCATGCCC GTTTCACAAC GACCAGCGCG AGGCCCGTTC CGGCAAGCAG AAGACGCTGG TGCTGACCGG CGCCTCCCGC GGCATCGGTC ACGCTACCGG GAAGCTGTTC TCCGATGCCG GATGGCGAAT CATCACCTGT TCACGCCAGC CTTTCGCCGA TGATCGCTGC CCGTGGAGCA CCGGCGTCGA AAACCACGTC GCCGTCGAAC TGGCGGATCA TCGGGCCTTG CCGCGTGCGA TTGACGAACT CAAGGAGAAG CTGGCGGGCG GCCCGCTGAG CGCGTTGATC AATAACGCGG CGATCTCCCC GAAGAGCCAG GAAGGCGAAC GACTGACGTC GCTGAATACG CCGGTCGGGA CCTGGATGAG CGTGTTTCAC GTCAATCTGC TGGCGCCCGT GATGCTGGCG CAGGGATTGT TCGACGAACT GCGCGCCGGC AGCGGCTCGA TTGTCAATGT CACCTCGATC GTCGGCTCAC GCGTGCATCC GTTCGCCGGC AGCGCCTATG CGACGTCAAA GGCGGCGCTG ACCTGCCTCA CCCGCGAAAT GGCGCACGAC TACGCGCCCT ATGGCATCCG GGTGAATGCG ATCGCGCCGG GCGAGATCAA GACCGATATT CTCTCGCCCG AAACGGAGGC GATGCTGGCG CCGACAATTC CAATGCGCCG TATCGGGACA CCGGAAGAAG TCGCCAAGGT GATGTTCTTC CTGTGCTCGG ATGCCGCCAG TTACGTCACC GGCGAAGAAA TTCACATCAA TGGCGGGCAG CGGGTCTAG
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Protein sequence | MKQAMEIAVH SEPLQAERPG HPGSHGPGSH GPGNDGPGND GPGSHEPGMP ASGGACPFHN DQREARSGKQ KTLVLTGASR GIGHATGKLF SDAGWRIITC SRQPFADDRC PWSTGVENHV AVELADHRAL PRAIDELKEK LAGGPLSALI NNAAISPKSQ EGERLTSLNT PVGTWMSVFH VNLLAPVMLA QGLFDELRAG SGSIVNVTSI VGSRVHPFAG SAYATSKAAL TCLTREMAHD YAPYGIRVNA IAPGEIKTDI LSPETEAMLA PTIPMRRIGT PEEVAKVMFF LCSDAASYVT GEEIHINGGQ RV
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