Gene RPD_1060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1060 
Symbol 
ID4021536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1214455 
End bp1215393 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content63% 
IMG OID637961252 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_568199 
Protein GI91975540 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAG CGATGGAGAT CGCCGTGCAC AGCGAGCCGT TGCAGGCCGA ACGGCCAGGA 
CATCCCGGAA GCCATGGACC GGGAAGCCAT GGACCGGGAA ACGATGGACC GGGAAACGAT
GGACCAGGAA GCCACGAGCC GGGAATGCCG GCTTCCGGTG GCGCATGCCC GTTTCACAAC
GACCAGCGCG AGGCCCGTTC CGGCAAGCAG AAGACGCTGG TGCTGACCGG CGCCTCCCGC
GGCATCGGTC ACGCTACCGG GAAGCTGTTC TCCGATGCCG GATGGCGAAT CATCACCTGT
TCACGCCAGC CTTTCGCCGA TGATCGCTGC CCGTGGAGCA CCGGCGTCGA AAACCACGTC
GCCGTCGAAC TGGCGGATCA TCGGGCCTTG CCGCGTGCGA TTGACGAACT CAAGGAGAAG
CTGGCGGGCG GCCCGCTGAG CGCGTTGATC AATAACGCGG CGATCTCCCC GAAGAGCCAG
GAAGGCGAAC GACTGACGTC GCTGAATACG CCGGTCGGGA CCTGGATGAG CGTGTTTCAC
GTCAATCTGC TGGCGCCCGT GATGCTGGCG CAGGGATTGT TCGACGAACT GCGCGCCGGC
AGCGGCTCGA TTGTCAATGT CACCTCGATC GTCGGCTCAC GCGTGCATCC GTTCGCCGGC
AGCGCCTATG CGACGTCAAA GGCGGCGCTG ACCTGCCTCA CCCGCGAAAT GGCGCACGAC
TACGCGCCCT ATGGCATCCG GGTGAATGCG ATCGCGCCGG GCGAGATCAA GACCGATATT
CTCTCGCCCG AAACGGAGGC GATGCTGGCG CCGACAATTC CAATGCGCCG TATCGGGACA
CCGGAAGAAG TCGCCAAGGT GATGTTCTTC CTGTGCTCGG ATGCCGCCAG TTACGTCACC
GGCGAAGAAA TTCACATCAA TGGCGGGCAG CGGGTCTAG
 
Protein sequence
MKQAMEIAVH SEPLQAERPG HPGSHGPGSH GPGNDGPGND GPGSHEPGMP ASGGACPFHN 
DQREARSGKQ KTLVLTGASR GIGHATGKLF SDAGWRIITC SRQPFADDRC PWSTGVENHV
AVELADHRAL PRAIDELKEK LAGGPLSALI NNAAISPKSQ EGERLTSLNT PVGTWMSVFH
VNLLAPVMLA QGLFDELRAG SGSIVNVTSI VGSRVHPFAG SAYATSKAAL TCLTREMAHD
YAPYGIRVNA IAPGEIKTDI LSPETEAMLA PTIPMRRIGT PEEVAKVMFF LCSDAASYVT
GEEIHINGGQ RV