| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5114 |
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| Symbol | |
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| ID | 6412808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5496371 |
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| End bp | 5497192 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714999 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001994078 |
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| Protein GI | 192293473 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCCCG GTATGCCGGC AGGAATGCCG TCGGCTGCCG GCGGCGCCTG TCCGTTTCAC
AACGATCAGC GCGAGGCGCG CGTCGGCAAA CAGAAGACGC TGGTGCTGAC CGGCGCATCG
CGCGGCATCG GCCATGCCAC CGGAAAGCTG TTCTCCGACG CTGGCTGGCG CATCATCACT
TGCTCGCGGC AGCCGTTTGC CGACGATCGT TGCCCGTGGG CGACCGGTCT TGAGAATCAC
GTCGCGGTCG AACTCGCCGA TCATCGCGCG GTGCCGCGGG CGATCGACGA ATTGAAGGAA
AAGCTCGGCG GCGGGCCGCT GCATGCGCTG ATCAACAATG CGGCGATCTC GCCGAAAAGC
CCGGAAGGCG AGCGGCTGAC GTCGCTGAAT ACCCCGGTCG CGACCTGGAT GAGCGTGTTC
CACGTCAACC TGCTGGCACC GGTCATGATG GCGCAGGGGC TGTTCGATGA GCTGCGCGCC
GGGCAGGGCT CGATCGTCAA CGTCACCTCG ATCGTCGGTT CCCGGGTGCA TCCGTTCGCC
GGCAGCGCCT ACGCCACCTC GAAAGCGGCG CTGACCTGCC TGACCCGGGA GATGGCGCAT
GACTACGCGC CCTACGGCAT TCGGGTAAAT GCGATCGCGC CGGGTGAGAT CAAGACCGAC
ATCCTGTCGC CCGAGACCGA GGCGATGCTG GCGCCAACGA TTCCGATGCG CCGGATCGGA
ACCCCTGAGG AAGTCGCCAA GGTGATGTTC TTCCTGTGCT CGGATGCGGC CAGCTATGTC
ACCGGCGAAG AAATCCACAT CAATGGCGGT CAGCACGTCT GA
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| Protein sequence | MPPGMPAGMP SAAGGACPFH NDQREARVGK QKTLVLTGAS RGIGHATGKL FSDAGWRIIT
CSRQPFADDR CPWATGLENH VAVELADHRA VPRAIDELKE KLGGGPLHAL INNAAISPKS
PEGERLTSLN TPVATWMSVF HVNLLAPVMM AQGLFDELRA GQGSIVNVTS IVGSRVHPFA
GSAYATSKAA LTCLTREMAH DYAPYGIRVN AIAPGEIKTD ILSPETEAML APTIPMRRIG
TPEEVAKVMF FLCSDAASYV TGEEIHINGG QHV
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