More than 300 homologs were found in PanDaTox collection
for query gene Avin_04400 on replicon NC_012560
Organism: Azotobacter vinelandii DJ



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012560  Avin_04400  Soluble nickel-dependent hydrogenase, large subunit, HoxH  100 
 
 
419 aa  840    Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0507  nickel-dependent hydrogenase large subunit  76.13 
 
 
429 aa  674    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2590  nickel-dependent hydrogenase large subunit  62.29 
 
 
433 aa  506  9.999999999999999e-143  Rhodothermus marinus DSM 4252  Bacteria  normal  0.282401  n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  57.66 
 
 
433 aa  506  9.999999999999999e-143  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  58.57 
 
 
431 aa  475  1e-133  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  55.95 
 
 
431 aa  466  9.999999999999999e-131  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4826  nickel-dependent hydrogenase large subunit  58.37 
 
 
428 aa  459  9.999999999999999e-129  Streptosporangium roseum DSM 43021  Bacteria  normal  0.106762  normal 
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  57.28 
 
 
422 aa  455  1e-127  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  57.28 
 
 
432 aa  455  1e-127  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  58.17 
 
 
428 aa  457  1e-127  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  55.29 
 
 
430 aa  447  1.0000000000000001e-124  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  53.94 
 
 
433 aa  432  1e-120  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_009077  Mjls_3427  nickel-dependent hydrogenase, large subunit  54.65 
 
 
430 aa  431  1e-119  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260108 
 
 
-
 
NC_008146  Mmcs_3416  nickel-dependent hydrogenase, large subunit  54.65 
 
 
430 aa  431  1e-119  Mycobacterium sp. MCS  Bacteria  normal  0.291194  n/a   
 
 
-
 
NC_008705  Mkms_3479  nickel-dependent hydrogenase, large subunit  54.65 
 
 
430 aa  431  1e-119  Mycobacterium sp. KMS  Bacteria  normal  0.441341  normal  0.0523033 
 
 
-
 
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  54.05 
 
 
432 aa  418  1e-116  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_006369  lpl2387  hypothetical protein  47.16 
 
 
430 aa  387  1e-106  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2532  hypothetical protein  46.78 
 
 
430 aa  384  1e-105  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013158  Huta_2605  nickel-dependent hydrogenase large subunit  34.36 
 
 
439 aa  254  2.0000000000000002e-66  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0537031  n/a   
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  35.48 
 
 
430 aa  251  1e-65  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  34.93 
 
 
426 aa  244  1.9999999999999999e-63  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  34.82 
 
 
432 aa  238  2e-61  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  32.13 
 
 
425 aa  234  3e-60  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  32.05 
 
 
424 aa  227  2e-58  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2499  nickel-dependent hydrogenase large subunit  32.37 
 
 
424 aa  228  2e-58  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  31.4 
 
 
425 aa  228  2e-58  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_008639  Cpha266_2169  nickel-dependent hydrogenase, large subunit  31.64 
 
 
424 aa  220  3.9999999999999997e-56  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  31.52 
 
 
421 aa  212  1e-53  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_012918  GM21_2249  nickel-dependent hydrogenase large subunit  34.28 
 
 
423 aa  200  3.9999999999999996e-50  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  32.86 
 
 
425 aa  199  6e-50  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1968  nickel-dependent hydrogenase large subunit  35.28 
 
 
423 aa  199  9e-50  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  29.82 
 
 
471 aa  163  5.0000000000000005e-39  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  31.24 
 
 
455 aa  160  5e-38  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  29.3 
 
 
471 aa  159  7e-38  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  30.86 
 
 
493 aa  159  1e-37  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  32.81 
 
 
504 aa  158  1e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  28.06 
 
 
475 aa  158  1e-37  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  29.73 
 
 
473 aa  154  2.9999999999999998e-36  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  29.73 
 
 
472 aa  152  8.999999999999999e-36  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  29.95 
 
 
473 aa  151  2e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  28.57 
 
 
499 aa  151  2e-35  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  31.49 
 
 
488 aa  150  5e-35  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  30.73 
 
 
474 aa  149  1.0000000000000001e-34  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  30.22 
 
 
473 aa  148  2.0000000000000003e-34  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  29.91 
 
 
504 aa  147  3e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  29.84 
 
 
494 aa  145  1e-33  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  27.21 
 
 
474 aa  145  1e-33  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  29.62 
 
 
487 aa  145  2e-33  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  29.04 
 
 
479 aa  144  3e-33  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  31.24 
 
 
507 aa  142  8e-33  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  29.93 
 
 
475 aa  140  3e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  27.29 
 
 
418 aa  139  7.999999999999999e-32  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  26.91 
 
 
479 aa  139  1e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  28.91 
 
 
509 aa  137  3.0000000000000003e-31  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  28 
 
 
473 aa  137  5e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  28.29 
 
 
474 aa  135  9.999999999999999e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  30.16 
 
 
473 aa  134  1.9999999999999998e-30  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  28.97 
 
 
487 aa  133  6.999999999999999e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  27.45 
 
 
418 aa  133  7.999999999999999e-30  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  28.4 
 
 
418 aa  132  1.0000000000000001e-29  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  28.76 
 
 
476 aa  132  1.0000000000000001e-29  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  27.29 
 
 
418 aa  132  1.0000000000000001e-29  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  27.29 
 
 
418 aa  132  1.0000000000000001e-29  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  26.78 
 
 
479 aa  131  2.0000000000000002e-29  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  27.88 
 
 
482 aa  131  2.0000000000000002e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  27.02 
 
 
486 aa  129  7.000000000000001e-29  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  28.45 
 
 
473 aa  129  8.000000000000001e-29  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  26.29 
 
 
479 aa  129  9.000000000000001e-29  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  28.63 
 
 
487 aa  128  2.0000000000000002e-28  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  26.98 
 
 
479 aa  128  2.0000000000000002e-28  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  28.54 
 
 
489 aa  128  2.0000000000000002e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  27.11 
 
 
474 aa  127  3e-28  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  27.11 
 
 
474 aa  127  4.0000000000000003e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  27.38 
 
 
449 aa  124  2e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_011891  A2cp1_4314  nickel-dependent hydrogenase large subunit  29.12 
 
 
494 aa  124  3e-27  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  26.87 
 
 
488 aa  124  3e-27  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  31.11 
 
 
478 aa  122  9.999999999999999e-27  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  28.1 
 
 
482 aa  122  9.999999999999999e-27  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  29.02 
 
 
469 aa  122  9.999999999999999e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  29.64 
 
 
494 aa  122  1.9999999999999998e-26  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  28.54 
 
 
488 aa  120  7e-26  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  26.62 
 
 
485 aa  118  1.9999999999999998e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4162  nickel-dependent hydrogenase, large subunit  29.85 
 
 
494 aa  116  8.999999999999998e-25  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0906302  n/a   
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  27.94 
 
 
488 aa  114  4.0000000000000004e-24  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  29.17 
 
 
476 aa  112  1.0000000000000001e-23  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  25.33 
 
 
449 aa  110  4.0000000000000004e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  25.64 
 
 
514 aa  108  2e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  24.14 
 
 
455 aa  102  2e-20  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  25.35 
 
 
488 aa  101  3e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  24.83 
 
 
410 aa  99  1e-19  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  26.03 
 
 
455 aa  96.3  9e-19  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009675  Anae109_4306  nickel-dependent hydrogenase large subunit  27.74 
 
 
498 aa  95.5  1e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.891144  normal  0.552071 
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  25.58 
 
 
410 aa  95.5  2e-18  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  24.3 
 
 
456 aa  94.7  3e-18  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  24.26 
 
 
458 aa  94  5e-18  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  24.39 
 
 
481 aa  93.6  6e-18  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  24.83 
 
 
456 aa  93.6  7e-18  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  26.42 
 
 
488 aa  92.4  1e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  24.68 
 
 
485 aa  91.7  2e-17  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  22.99 
 
 
470 aa  90.1  7e-17  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
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