More than 300 homologs were found in PanDaTox collection
for query gene Memar_1007 on replicon NC_009051
Organism: Methanoculleus marisnigri JR1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  100 
 
 
455 aa  936    Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  48.03 
 
 
474 aa  434  1e-120  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  44.35 
 
 
479 aa  400  9.999999999999999e-111  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  43.5 
 
 
479 aa  397  1e-109  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  43.28 
 
 
479 aa  393  1e-108  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  44.78 
 
 
474 aa  391  1e-107  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  43.25 
 
 
482 aa  379  1e-104  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  43.45 
 
 
474 aa  377  1e-103  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  43.45 
 
 
474 aa  378  1e-103  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  43.71 
 
 
487 aa  374  1e-102  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  44.01 
 
 
473 aa  373  1e-102  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  45.06 
 
 
479 aa  374  1e-102  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  43.29 
 
 
473 aa  375  1e-102  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  43.78 
 
 
469 aa  371  1e-101  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  44.69 
 
 
474 aa  370  1e-101  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  43.81 
 
 
418 aa  368  1e-100  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  42.48 
 
 
476 aa  365  1e-99  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  42.76 
 
 
482 aa  364  1e-99  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  41.34 
 
 
472 aa  364  2e-99  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  40.62 
 
 
475 aa  363  3e-99  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  43.01 
 
 
478 aa  360  2e-98  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  43.26 
 
 
475 aa  358  9.999999999999999e-98  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  41.24 
 
 
471 aa  357  1.9999999999999998e-97  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  41.91 
 
 
471 aa  357  1.9999999999999998e-97  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  42.12 
 
 
476 aa  356  5.999999999999999e-97  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  41.56 
 
 
504 aa  354  2e-96  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  40.99 
 
 
486 aa  349  7e-95  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  41.81 
 
 
494 aa  348  1e-94  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  42.45 
 
 
418 aa  347  3e-94  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  40.04 
 
 
485 aa  345  8.999999999999999e-94  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  42.45 
 
 
418 aa  345  1e-93  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  42.21 
 
 
418 aa  343  2.9999999999999997e-93  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  41.77 
 
 
473 aa  342  5.999999999999999e-93  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  41.34 
 
 
473 aa  342  9e-93  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  41.65 
 
 
479 aa  340  2e-92  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  40.04 
 
 
504 aa  341  2e-92  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  39.75 
 
 
487 aa  340  2.9999999999999998e-92  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  41.05 
 
 
418 aa  339  8e-92  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  40.85 
 
 
507 aa  337  1.9999999999999998e-91  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  41.52 
 
 
449 aa  335  9e-91  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  40.3 
 
 
493 aa  334  2e-90  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  40.09 
 
 
509 aa  332  7.000000000000001e-90  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  41.92 
 
 
473 aa  331  1e-89  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  42.14 
 
 
473 aa  329  7e-89  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  40.56 
 
 
488 aa  326  5e-88  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  38.44 
 
 
499 aa  326  7e-88  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  41.74 
 
 
449 aa  325  1e-87  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  39.48 
 
 
487 aa  324  2e-87  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  38.43 
 
 
488 aa  324  2e-87  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_011891  A2cp1_4314  nickel-dependent hydrogenase large subunit  36.6 
 
 
494 aa  309  5e-83  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  35.96 
 
 
494 aa  305  1.0000000000000001e-81  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  38.08 
 
 
488 aa  303  4.0000000000000003e-81  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_007760  Adeh_4162  nickel-dependent hydrogenase, large subunit  37.02 
 
 
494 aa  290  2e-77  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0906302  n/a   
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  37.76 
 
 
489 aa  289  7e-77  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_009675  Anae109_4306  nickel-dependent hydrogenase large subunit  36.38 
 
 
498 aa  278  2e-73  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.891144  normal  0.552071 
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  32.43 
 
 
430 aa  205  1e-51  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  33.85 
 
 
430 aa  198  2.0000000000000003e-49  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_013158  Huta_2605  nickel-dependent hydrogenase large subunit  31.98 
 
 
439 aa  197  3e-49  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0537031  n/a   
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  32.06 
 
 
424 aa  191  2e-47  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  32.51 
 
 
425 aa  189  7e-47  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2169  nickel-dependent hydrogenase, large subunit  31.17 
 
 
424 aa  187  3e-46  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  30.38 
 
 
426 aa  186  1.0000000000000001e-45  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  33.04 
 
 
431 aa  184  2.0000000000000003e-45  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2499  nickel-dependent hydrogenase large subunit  31.49 
 
 
424 aa  184  3e-45  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  31.26 
 
 
433 aa  178  1e-43  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  29.75 
 
 
425 aa  178  2e-43  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  30.85 
 
 
421 aa  177  3e-43  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_013501  Rmar_2590  nickel-dependent hydrogenase large subunit  32.97 
 
 
433 aa  176  8e-43  Rhodothermus marinus DSM 4252  Bacteria  normal  0.282401  n/a   
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  28.69 
 
 
432 aa  175  9.999999999999999e-43  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_009077  Mjls_3427  nickel-dependent hydrogenase, large subunit  30.4 
 
 
430 aa  173  5e-42  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260108 
 
 
-
 
NC_008146  Mmcs_3416  nickel-dependent hydrogenase, large subunit  30.4 
 
 
430 aa  173  5e-42  Mycobacterium sp. MCS  Bacteria  normal  0.291194  n/a   
 
 
-
 
NC_008705  Mkms_3479  nickel-dependent hydrogenase, large subunit  30.4 
 
 
430 aa  173  5e-42  Mycobacterium sp. KMS  Bacteria  normal  0.441341  normal  0.0523033 
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  30.63 
 
 
431 aa  172  7.999999999999999e-42  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  31.91 
 
 
432 aa  172  1e-41  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  31.66 
 
 
422 aa  171  2e-41  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  29.16 
 
 
456 aa  170  4e-41  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  29.59 
 
 
456 aa  169  7e-41  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  30.77 
 
 
455 aa  169  9e-41  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  28.38 
 
 
425 aa  167  2.9999999999999998e-40  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_006369  lpl2387  hypothetical protein  28.13 
 
 
430 aa  165  2.0000000000000002e-39  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  29.52 
 
 
410 aa  165  2.0000000000000002e-39  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  32.43 
 
 
428 aa  164  2.0000000000000002e-39  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  29.91 
 
 
433 aa  162  1e-38  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_006368  lpp2532  hypothetical protein  27.68 
 
 
430 aa  160  3e-38  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  28.63 
 
 
410 aa  161  3e-38  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_010581  Bind_0507  nickel-dependent hydrogenase large subunit  31.56 
 
 
429 aa  160  4e-38  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_04400  Soluble nickel-dependent hydrogenase, large subunit, HoxH  31.24 
 
 
419 aa  160  5e-38  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1968  nickel-dependent hydrogenase large subunit  29.29 
 
 
423 aa  157  4e-37  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  28.7 
 
 
432 aa  155  2e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_009635  Maeo_1045  nickel-dependent hydrogenase large subunit  28.7 
 
 
385 aa  154  4e-36  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  28.6 
 
 
455 aa  153  5e-36  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_013595  Sros_4826  nickel-dependent hydrogenase large subunit  31.25 
 
 
428 aa  150  4e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.106762  normal 
 
 
-
 
NC_012918  GM21_2249  nickel-dependent hydrogenase large subunit  28.18 
 
 
423 aa  150  7e-35  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007796  Mhun_2332  nickel-dependent hydrogenase, large subunit  26.8 
 
 
469 aa  146  9e-34  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011832  Mpal_0084  coenzyme F420 hydrogenase, subunit alpha  27.16 
 
 
455 aa  145  2e-33  Methanosphaerula palustris E1-9c  Archaea  decreased coverage  0.0042117  normal  0.0638209 
 
 
-
 
NC_009634  Mevan_0692  nickel-dependent hydrogenase large subunit  27.93 
 
 
390 aa  135  9.999999999999999e-31  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1291  coenzyme F420 hydrogenase, subunit alpha  27.42 
 
 
390 aa  135  1.9999999999999998e-30  Methanococcus maripaludis C6  Archaea  normal  0.333817  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  24.74 
 
 
481 aa  135  1.9999999999999998e-30  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  27.62 
 
 
458 aa  134  1.9999999999999998e-30  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0627  nickel-dependent hydrogenase large subunit  27.64 
 
 
390 aa  134  3e-30  Methanococcus maripaludis C7  Archaea  normal  normal  0.931032 
 
 
-
 
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