| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1215 |
|---|
| Symbol | |
|---|
| ID | 4623766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 1516764 |
|---|
| End bp | 1518263 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639796430 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_942646 |
|---|
| Protein GI | 119944966 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0417903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACC CTATGGATCA TTCATTAGAC ACAGCAGAAA ACAGCGAAAA CCTGAAAAGA
TTTGTGATTG AACCTGTATC AAGAGTAGAG GGACACGGTA AAGTGACGCT GCTCGTTGAT
GATAATAATC AGATTCAGCA GTGTCGTCTG CATATTGCCG AATTTCGGGG ATTTGAACGT
TTTATTCAAG GGCGTCCTTA TTGGGAAATT CCTATTTTGG TTCAGCGACT TTGTGGCATC
TGCCCGGTTA GCCATCATAT TGCCGCCGGC AAGGCGATTG ATATGATTAG TGGCGTCACA
GAGCTTACCG AATCCGCCTA TAAATTAAGA TTATTACTGC ATTACGGGCA AACTTTACAG
TCCCATGCGC TGCACTTTTT TCATCTCTGC TCACCGGACT TCCTGTTTGG TTTTGAAAGT
GAACTTGCCG GCAGAAATAT CGTCGGCGTA ATTCAAAAAC ACCCGGAGCT CGCGCTTCAG
GGAGTGAAAC TCAGAAAGTA TGGTCAGGAG GTGATCCGGG TTATTTGCGG TAAGCGCATC
CATGGCACGG GTTGTATTCC GGGCGGCATG AATAAACCTT TAAGCCGGGA GGATAAGCAC
TATCTTCTTG GTGACACTGA GCAGATCATC GCATGGGCAG AGTGCGCGGT TAAAACAGCC
CGAGATTGTT ATCTCGCTAA TGAGCCTTTC CACAAAAATT TCGCCGGTTT AAGGTCCAAT
TATTTAAGCT TAGTCGGCGA TAAGGGTGAG CTTAATCTTT ATCACGGTAA ATTAAGATTA
AAAGATGCCA GCGGTAATCT ACTCTTTGAT AAACAGGATT ATTGCGATTA TCAAAATCTG
ATTCAGGAAG AAGTTAAATC ATGGACCTAT ATGAAATTTC CTTTTATTAA AACAATGGGC
AAAGAATCAG GTTGGTACCG TACAGGCCCA TTAGCACGAG TCAATAATTG TGATTATATA
CCGACACCCC TGGCTGAAAT GGCGCGTCAA GAATTTGTCG CCTATGGCGG TAAAGAGCCG
GTGCATTCAA CATTAGCCTA CCATTGGGCG CGCATGATAG AAGTGCTTTT TTCTGCCGAA
AAAATCAAGC AGTTACTCTT CGATCCCATG ATTACCGGAA AAGATCTTAT TGTTCAGGGC
AAGCGCCAGA GCGAAGGGAT AGGCGTGGTT GAGGCACCAC GGGGAACACT GATTCATCAT
TACCAGGTGG GTGAAGATGA TCTGATCACT AAAGCCAATC TTATCGTCGC GACGACCCAT
AACAATACCG CATTAAATGA ATCTATCCGC ATCGTTTGCA CTCAGCAAAT TAACGGCCGG
GAAATCAGCG AAAAGGTGTT AAATAATATA GAAGTTGCCA TTCGTGCTTA TGATCCCTGT
TTATCCTGTG CAACGCACGC GATCGGCAGA ATGCCGCTAA AAGTTGAAAT GCGCCACCAG
CAAAGCGGAG AGCTTATCAG CCAACTGATT AAGGATATCG ATGGCACTCT ACACCGCTAA
|
|---|
| Protein sequence | MDNPMDHSLD TAENSENLKR FVIEPVSRVE GHGKVTLLVD DNNQIQQCRL HIAEFRGFER
FIQGRPYWEI PILVQRLCGI CPVSHHIAAG KAIDMISGVT ELTESAYKLR LLLHYGQTLQ
SHALHFFHLC SPDFLFGFES ELAGRNIVGV IQKHPELALQ GVKLRKYGQE VIRVICGKRI
HGTGCIPGGM NKPLSREDKH YLLGDTEQII AWAECAVKTA RDCYLANEPF HKNFAGLRSN
YLSLVGDKGE LNLYHGKLRL KDASGNLLFD KQDYCDYQNL IQEEVKSWTY MKFPFIKTMG
KESGWYRTGP LARVNNCDYI PTPLAEMARQ EFVAYGGKEP VHSTLAYHWA RMIEVLFSAE
KIKQLLFDPM ITGKDLIVQG KRQSEGIGVV EAPRGTLIHH YQVGEDDLIT KANLIVATTH
NNTALNESIR IVCTQQINGR EISEKVLNNI EVAIRAYDPC LSCATHAIGR MPLKVEMRHQ
QSGELISQLI KDIDGTLHR
|
|---|
| |