More than 300 homologs were found in PanDaTox collection
for query gene Mbar_A2287 on replicon NC_007355
Organism: Methanosarcina barkeri str. Fusaro



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  73.85 
 
 
455 aa  716    Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  86.18 
 
 
456 aa  829    Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  100 
 
 
456 aa  953    Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_011832  Mpal_0084  coenzyme F420 hydrogenase, subunit alpha  71.65 
 
 
455 aa  701    Methanosphaerula palustris E1-9c  Archaea  decreased coverage  0.0042117  normal  0.0638209 
 
 
-
 
NC_007796  Mhun_2332  nickel-dependent hydrogenase, large subunit  68.13 
 
 
469 aa  670    Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_0479  coenzyme F420 hydrogenase  69.79 
 
 
437 aa  659    Candidatus Methanoregula boonei 6A8  Archaea  normal  0.654505  normal 
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  68.57 
 
 
455 aa  682    Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_2023  nickel-dependent hydrogenase, large subunit  57.99 
 
 
438 aa  542  1e-153  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.113638 
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  40.92 
 
 
410 aa  332  8e-90  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  40.83 
 
 
410 aa  328  1.0000000000000001e-88  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009635  Maeo_1045  nickel-dependent hydrogenase large subunit  36.26 
 
 
385 aa  249  1e-64  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0692  nickel-dependent hydrogenase large subunit  34.94 
 
 
390 aa  235  1.0000000000000001e-60  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1291  coenzyme F420 hydrogenase, subunit alpha  33.94 
 
 
390 aa  233  6e-60  Methanococcus maripaludis C6  Archaea  normal  0.333817  n/a   
 
 
-
 
NC_009637  MmarC7_0627  nickel-dependent hydrogenase large subunit  34.33 
 
 
390 aa  233  6e-60  Methanococcus maripaludis C7  Archaea  normal  normal  0.931032 
 
 
-
 
NC_009135  MmarC5_0196  nickel-dependent hydrogenase, large subunit  34.63 
 
 
390 aa  233  8.000000000000001e-60  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  29.59 
 
 
455 aa  169  7e-41  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  27.87 
 
 
475 aa  151  3e-35  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  27.27 
 
 
471 aa  150  5e-35  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  27.33 
 
 
471 aa  149  1.0000000000000001e-34  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  29.38 
 
 
474 aa  146  9e-34  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  27.95 
 
 
476 aa  144  4e-33  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  28.7 
 
 
418 aa  139  1e-31  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  28.7 
 
 
418 aa  139  1e-31  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  28.66 
 
 
472 aa  138  2e-31  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  29.09 
 
 
418 aa  138  3.0000000000000003e-31  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  28.48 
 
 
418 aa  137  4e-31  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  26.3 
 
 
482 aa  135  9.999999999999999e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  27.62 
 
 
485 aa  135  9.999999999999999e-31  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  28.63 
 
 
479 aa  135  1.9999999999999998e-30  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  25.41 
 
 
479 aa  134  3.9999999999999996e-30  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  28.17 
 
 
478 aa  133  6.999999999999999e-30  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  26.04 
 
 
473 aa  132  1.0000000000000001e-29  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  27.61 
 
 
486 aa  132  1.0000000000000001e-29  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  26.64 
 
 
421 aa  132  1.0000000000000001e-29  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  27.46 
 
 
488 aa  130  4.0000000000000003e-29  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  26.62 
 
 
482 aa  130  5.0000000000000004e-29  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  27.27 
 
 
493 aa  130  6e-29  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  25.97 
 
 
487 aa  129  1.0000000000000001e-28  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  27.82 
 
 
494 aa  128  3e-28  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  26.43 
 
 
504 aa  125  2e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  27.87 
 
 
418 aa  125  2e-27  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  25.27 
 
 
479 aa  124  3e-27  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  27.52 
 
 
473 aa  124  3e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  26.5 
 
 
488 aa  124  3e-27  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  25.73 
 
 
473 aa  124  3e-27  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  25.87 
 
 
481 aa  123  7e-27  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  25.31 
 
 
473 aa  123  8e-27  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  27.08 
 
 
504 aa  122  9.999999999999999e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  27.51 
 
 
449 aa  121  1.9999999999999998e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  25.7 
 
 
517 aa  121  1.9999999999999998e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  25.37 
 
 
479 aa  121  3e-26  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  26.93 
 
 
487 aa  120  3.9999999999999996e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  24.32 
 
 
431 aa  120  3.9999999999999996e-26  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  25.96 
 
 
433 aa  120  3.9999999999999996e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  27.37 
 
 
499 aa  120  4.9999999999999996e-26  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  24.84 
 
 
473 aa  120  6e-26  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  27.68 
 
 
507 aa  120  7e-26  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  24.74 
 
 
479 aa  119  7.999999999999999e-26  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  25.85 
 
 
425 aa  119  9.999999999999999e-26  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  27.04 
 
 
474 aa  119  9.999999999999999e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  24.89 
 
 
430 aa  118  1.9999999999999998e-25  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  24.62 
 
 
469 aa  118  1.9999999999999998e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  27.27 
 
 
425 aa  117  3.9999999999999997e-25  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  25.67 
 
 
509 aa  117  5e-25  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  23.33 
 
 
577 aa  116  7.999999999999999e-25  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  25.61 
 
 
476 aa  116  7.999999999999999e-25  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  24.17 
 
 
567 aa  115  2.0000000000000002e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  23.78 
 
 
568 aa  114  3e-24  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  26.12 
 
 
473 aa  114  4.0000000000000004e-24  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  25.74 
 
 
488 aa  114  4.0000000000000004e-24  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  23.63 
 
 
567 aa  113  6e-24  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  23.63 
 
 
567 aa  113  7.000000000000001e-24  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  25.66 
 
 
432 aa  113  8.000000000000001e-24  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  26.35 
 
 
518 aa  112  9e-24  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  25 
 
 
425 aa  112  1.0000000000000001e-23  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  23.46 
 
 
567 aa  111  2.0000000000000002e-23  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  23.46 
 
 
567 aa  111  2.0000000000000002e-23  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  23.82 
 
 
567 aa  111  3e-23  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  27.08 
 
 
474 aa  111  3e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  23.39 
 
 
570 aa  110  5e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  26.87 
 
 
474 aa  110  7.000000000000001e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  24.17 
 
 
526 aa  109  1e-22  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  25.76 
 
 
424 aa  108  1e-22  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  25.88 
 
 
474 aa  109  1e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  22.93 
 
 
567 aa  108  2e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  25.59 
 
 
426 aa  108  2e-22  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  26.34 
 
 
432 aa  108  2e-22  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  25.41 
 
 
488 aa  108  2e-22  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  26.67 
 
 
475 aa  108  3e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  24.2 
 
 
567 aa  107  3e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  25.71 
 
 
431 aa  108  3e-22  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  24.44 
 
 
494 aa  107  4e-22  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  26.06 
 
 
422 aa  107  4e-22  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_009429  Rsph17025_3378  NADH ubiquinone oxidoreductase, 20 kDa subunit  24.59 
 
 
474 aa  107  7e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.40537  normal 
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  24.69 
 
 
458 aa  106  1e-21  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0805  nickel-dependent hydrogenase large subunit  26.5 
 
 
465 aa  105  1e-21  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  26.28 
 
 
449 aa  106  1e-21  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  22.93 
 
 
570 aa  105  2e-21  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  24.84 
 
 
487 aa  104  3e-21  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  25.62 
 
 
489 aa  104  4e-21  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>