| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3537 |
|---|
| Symbol | |
|---|
| ID | 4458168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 4327262 |
|---|
| End bp | 4328671 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639704308 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_847642 |
|---|
| Protein GI | 116750955 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAG CTTTTCAGAT CGAACCCGCG GACACGACAC AGAGCCACGG CGAGGGTGCC
CGGAAAGTCA TCAACATACA GCCGGTCACC AGGATTGAAG GCCACGCGCG CATTGCCGTT
CACCTCGACG ATGAGGGCAA CGTAGCCGAT GCAAGGGTTC ACATCATGTC CATGCGCGGC
TTCGAAAAAT TCATCGAGGG AAGGCCGGCC GAGGAAGTGC CCAGGATCGT GACCCGCATA
TGCGGGATCT GTCCCTGGCA GCATCATGTC GCATCCAGCA AAGCCGTGGA CGGGTGCTTC
GGAGCTTCCG TCCCTTCGGC CGGCAGGAAG CTGCGCGAGC TGATGCAGGT GATGGCCCAC
ATCAACGACA AGATTCTGCA TTTCTTTTTC CTGGCCGCTC CGGATTTCCT CCTGGGGTCC
GACAGTGAAT ACTCCGTTCG GAACATCATG GGGATCGCCG AAAAATCCCC GAAACTGGCC
GAAAAAGTCG TGCAGATGCG CTACCTCGGC CAAATGATGA TGGAACGATT CGCGGGAAAG
GCGATTCACC CGGTGGCGGT GGTACCCGGA GGGTTTTCCA AGCCCATGGT CGAATCCGAG
CGGCAGGAGC TCCTGGCGGG TTCCCGGCAA CAGCTCGAAT TCGCGCGGTA CGCCATGGAC
TTCGCCAAAA GCCGGGTTTT CTCGGCGACC GATCCGACCA CGAAGCGGAT CGGGGACATC
ACCACGGGGT TTCTCGGCAC GGTGAGCCCC GCCGACGGTT CGCTGAACCT TTACGAAGGC
CTCCTGCGCC TGATGAGGCC GGATGGTTCC TTCCACGAGT TCTCGTCCCG TGAATACGCG
GATTTCATCG GGGAACACGT GGAACCCTGG TCTTACGGCA AATTCCCCTT TGCCCACGCA
TGGGGCGAGG GATTTTCCAT GGATCTGGAA CAGCCTCGAG GGGTCTATCG CACCAACTGC
CTGGCGCGCA TCAACGTGGC GGATCGCATC GACACACCCC TCGCCCAGGC GGAGCTTGTC
GAATTCCGGT CGGAGTTCGG AAGACCGGCC CAGTCGACGA TGCTCTATCA TCGGGCAAGG
ATGATCGAGC TGCTGCATGC CTGTGAGAAG GTCGTGGAAC TGCTCGAGTC GCCCGACATC
ACCGATCCGC GCGTGAGAGA CGAGGTGTGG CCTCGGGCCG GCCGCGGGGT GGGTTGCGTC
GAGGCCCCCA GGGGCACCCT GATTCATGAT TACTCCACGG ATGAAAGCGG CTGCATCACC
CGCGCGAACC TGATTGTGGG CACCACCCAC AACCTCGCCC CCATCAACAT GAGCGTGAAA
AAGGCGGCCC GCGACCTCAT TCAAAACGGA AACGTCGACG AGGGACTGCT CAATCGGGTG
GAGATGGCCG TGCGCGCCTA CGACCCTTGA
|
|---|
| Protein sequence | MGKAFQIEPA DTTQSHGEGA RKVINIQPVT RIEGHARIAV HLDDEGNVAD ARVHIMSMRG
FEKFIEGRPA EEVPRIVTRI CGICPWQHHV ASSKAVDGCF GASVPSAGRK LRELMQVMAH
INDKILHFFF LAAPDFLLGS DSEYSVRNIM GIAEKSPKLA EKVVQMRYLG QMMMERFAGK
AIHPVAVVPG GFSKPMVESE RQELLAGSRQ QLEFARYAMD FAKSRVFSAT DPTTKRIGDI
TTGFLGTVSP ADGSLNLYEG LLRLMRPDGS FHEFSSREYA DFIGEHVEPW SYGKFPFAHA
WGEGFSMDLE QPRGVYRTNC LARINVADRI DTPLAQAELV EFRSEFGRPA QSTMLYHRAR
MIELLHACEK VVELLESPDI TDPRVRDEVW PRAGRGVGCV EAPRGTLIHD YSTDESGCIT
RANLIVGTTH NLAPINMSVK KAARDLIQNG NVDEGLLNRV EMAVRAYDP
|
|---|
| |